sample geneA chrA posA ortA featureA geneB chrB posB ortB featureB sv_ort readsA readsB matchA matchB repeatA repeatB coverageA coverageB ratioA ratioB qposA qposB total_readsA total_readsB contig type score rating medal functional effect frame sv_refseqA sv_refseqA_codon sv_refseqA_exon sv_refseqA_anchor_type sv_refseqA_coding_base_number sv_refseqA_last_coding_base_number sv_refseqA_AA_index sv_refseqA_contig_index sv_refseqB sv_refseqB_codon sv_refseqB_exon sv_refseqB_anchor_type sv_refseqB_coding_base_number sv_refseqB_last_coding_base_number sv_refseqB_AA_index sv_refseqB_contig_index sv_AA sv_desc sv_processing_exception sv_general_info sv_interstitial_AA sv_frame_index MV4_11_RNAseq_1 FLT3 chr13 28608255 - coding FLT3 chr13 28608284 - coding > 180 100 149 148 0.000 0.000 3573 1561 0.330 0.190 149 149 1732 1612 TCTCCTCTTCATTGTCGTTTTAACCCTGCTAATTTGTCACAAGTACAAAAAGCAATTTAGGTATGAAAGCCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAGGAGTCTCAATCC Internal_dup 10268.00 HQ 4 ITD 1 NM_004119 591 14 perfect 1801 38 117 NM_004119 591 14 tuple 1772 2982 39 118 LLFIVVLTLLICHKYKKQFRYESQLQMVQVTGSSDNEYFYVDFREYEYDHVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSI FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 MV4_11_RNAseq_1 CTSC chr11 88033698 - coding RAB38 chr11 87883123 - coding > 11 11 277 130 0.000 0.000 552 704 0.040 1.000 277 277 1186 11 GAAAAGTATTCTAATAGGCTCTACAAGTATGATCACAACTTTGTGAAAGCTATCAATGCCATTCAGAAGTCTTGGACTGCAACTACATACATGGAATATGAGACTCTTACCCTGGGAGATATGATTAGGAGAAGTGGTGGCCACAGTCGAAAAATCCCAAGGCCCAAACCTGCACCACTGACTGCTGAAATACAGCAAAAGATTTTGCATTTGCCAACATCTTGGGACTGGAGAAATGTTCATGGTATCAATTTTGTCAGTCCTGTTCGAAACCAAGGTCAAGAAAGATTTGGAAACATGACGAGGGTCTATTACCGAGAAGCTATGGGTGCATTTATTGTCTTCGATGTCACCAGGCCAGTCACATTTGAAGCAGTGGCAAAGTGGAAAAATGATTTGGACTCCAG DEL 2512.00 HQ 0 Fusion 1 NM_001814 253 5 perfect 91 275 NM_022337 68 2 tuple 203 636 92 276 EKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQGQERFGNMTRVYYREAMGAFIVFDVTRPVTFEAVAKWKNDLDS CTSC:NM_001814[1,5]-RAB38:NM_022337[2,3] geneB_transcripts=NM_022337 0 MV4_11_RNAseq_1 CAPNS1 chr19 36640985 - 3utr TPT1 chr13 45914319 - coding > 0 68 80 136 0.000 0.000 0 726 0.000 0.010 80 103 3835 75108 GGGGCATGGAGGCATCACAAGTGCTAGGCTTGGCACAGGTACAGGGGAGAGGTTACGGAGTGGGTGTGTGCAGGGCCTGGAGGTGAAGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCGGAAGGCGGCGAGGGGGAGTGGACCGGAAGCACAGTAATCACGGGTGGCGATATTGTCATGAACCATCACCTGCATGAAACAAGTT CTX 1452.00 HQ 0 upTSS 0,0,0,0,0,0,3,2,3 NM_001003962,NM_001749,NM_001003962,NM_001749,NM_001003962,NM_001749,,, ,,,,,,,, 11,11,11,11,11,11,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001286272,NM_001286272,NM_001286273,NM_001286273,NM_003295,NM_003295,NM_001286272,NM_001286273,NM_003295 35,35,1,1,35,35,35,1,35 3,3,2,2,3,3,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 103,103,1,1,103,103,103,1,103 594,594,417,417,519,519,594,417,519 31,31,31,31,31,31,,, ,,,,,,,, GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,GHGGITSARLGTGTGERLRSGCVQGLEVKGKMVSRTEGNIDDSLIGGNASAEGGEGEWTGSTVITGGDIVMNHHLHETS,,, CAPNS1:NM_001003962[1,11]-TPT1:NM_001286272[3,6];CAPNS1:NM_001749[1,11]-TPT1:NM_001286272[3,6];CAPNS1:NM_001003962[1,11]-TPT1:NM_001286273[2,5];CAPNS1:NM_001749[1,11]-TPT1:NM_001286273[2,5];CAPNS1:NM_001003962[1,11]-TPT1:NM_003295[3,6];CAPNS1:NM_001749[1,11]-TPT1:NM_003295[3,6];;; geneB_transcripts=NM_001286272,NM_001286273,NM_003295;reannotated geneB from TPT1,SNORA31 to TPT1 ,,,,,,,, 1,1,1,1,1,1,,, MV4_11_RNAseq_1 CBFA2T2 chr20 32078107 + coding RALY chr20 32619328 + 5utr > 6 6 119 63 0.000 0.000 190 410 0.680 0.010 119 119 12 782 GGGCCGCGGGTCGAGGCGGGCGGCGCCTGCGAGGGACCCGTGTCGCGGGTAGAGGCGGGCGGCGCGCGGCGGCGGCGCTCGGCGATGGTAGGCGTCCCTGGAGCGGCCGCCTTCCAGCGTGAGCCCTATTCCCAGAGGCAGGTGGTGCTGACCCTGTAACCCAAAGGAGGAAACAGCCGGC DEL 820.94 HQ 1 Fusion 1,1 NM_001032999,NM_001032999 12,12 1,1 tuple,tuple 34,34 38,38 116,116 NM_007367,NM_016732 -30,-30 2,2 tuple,tuple , 873,921 42,42 126,126 GPRVEAGGACEGPVSRVEAGGARRRRSAMVGVPGAAAFQREPYSQRQVVLTL*PKGGNSR,GPRVEAGGACEGPVSRVEAGGARRRRSAMVGVPGAAAFQREPYSQRQVVLTL*PKGGNSR CBFA2T2:NM_001032999[1,1]-RALY:NM_007367[2,9];CBFA2T2:NM_001032999[1,1]-RALY:NM_016732[2,10] geneB_transcripts=NM_007367,NM_016732;geneb_utr_codons=13 REP,REP 0,0 MV4_11_RNAseq_1 SLITRK1 chr13 84479342 + intergenic HSD17B12 chr11 43877440 + 3utr > 15 35 299 444 0.990 0.000 576 1651 1.000 0.820 305 306 45 174 TTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 592.51 HQ 0 other 0,0 NM_052910,NM_001281503 , , , , , , NM_016142,NM_016142 , , , , 939,939 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 , , MV4_11_RNAseq_1 PSMA1 chr11 14535137 - coding MAP2K7 chr19 7977182 + coding > 0 3 299 154 0.000 0.150 0 284 0.010 0.080 300 320 2111 105 CGGGGCTTACTGCTGATGCTAGACTGTTATGTAATTTTATGCGTCAGGAGTGTTTGGATTCCAGATTTGTATTCGATAGACCACTGCCTGTGTCTCGTCTTGTATCTCTAATTGGAAGCAAGACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGTCTCCTTATTGCTGGTTATGATGATATGGGCCCTCACATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCCATGTCCATTGGAGCCCGTTCCCAATCAGCTCGTACTTACTTGAAGAGACCAAAGTATAATAAGCTACTTGAACACAGCTTCATCAAGCGCTACGAGACGCTGGAGGTGGACGTGGCGTCCTGGTTCAAGGATGTCATGGCGAAGACTGAGTCACCGCGGACTAGCGGCGTCCTGAGCCAGCCCCACCTGCCCTTCTTCAGGTAGCTGCTTGGCGGCGGCCAGC CTX 568.00 HQ 0 Fusion 1,1,1,1,1,1 NM_002786,NM_148976,NM_002786,NM_148976,NM_002786,NM_148976 173,179,173,179,173,179 7,8,7,8,7,8 tuple,tuple,tuple,tuple,tuple,tuple 523,541,523,541,523,541 96,96,96,96,96,96 292,292,292,292,292,292 NM_001297555,NM_001297555,NM_001297556,NM_001297556,NM_145185,NM_145185 392,392,383,383,376,376 12,12,11,11,11,11 tuple,tuple,tuple,tuple,tuple,tuple 1174,1174,1147,1147,1126,1126 1308,1308,1281,1281,1260,1260 106,106,106,106,106,106 320,320,320,320,320,320 GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ,GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLKRPKYNKLLEHSFIKRYETLEVDVASWFKDVMAKTESPRTSGVLSQPHLPFFR*LLGGGQ PSMA1:NM_002786[1,7]-MAP2K7:NM_001297555[12,12];PSMA1:NM_148976[1,8]-MAP2K7:NM_001297555[12,12];PSMA1:NM_002786[1,7]-MAP2K7:NM_001297556[11,11];PSMA1:NM_148976[1,8]-MAP2K7:NM_001297556[11,11];PSMA1:NM_002786[1,7]-MAP2K7:NM_145185[11,11];PSMA1:NM_148976[1,8]-MAP2K7:NM_145185[11,11] geneB_transcripts=NM_001297555,NM_001297556,NM_145185 KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL,KRPKYNKLL 2,2,2,2,2,2 MV4_11_RNAseq_1 CPNE1 chr20 34219607 - coding SRPRB chr3 133529961 + coding > 8 0 131 320 0.000 0.000 241 0 0.030 0.010 157 174 765 836 TCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGGGAAATGGCACCTGGTGTACAGATCTGAGGTCATCAAGAACAACCTGAACCCTACATGGAAGCGTTTCTCAGTCCCCGTTCAGCATTTCTGTGGTGGGAACCCCAGCACACCCATCCAGGTGCAATGCTCCGGCAGGGGCAATAGTCTGACCTTGATTGACCTTCCCGGCCATGAGAGTTTGAGGCTTCAGTTCTTAGAGCGGTTTAAGTCTTCAGCCAGGGCTATTGTGTTTGTTGTGGATAGTGCAGCATTCCAGCGAGAGGTGAAAGATGTGGCTGAGTTTCTGTATCAAGTCCTCATTGACAGTATGGGTCTGAAGAATACACCATCATTCTTAATAGCCTGCAATAAGCAAGATATTGCAATGGCAAAATCAGCAAAGTTAATTCAACAGCAGCTGGAGAAAGAACTCAACACCTTACGAGTTACCCGTTCTGCTGCCCCCAGCACACTGG CTX 482.00 HQ 0 Fusion 1,1,1,1,1,1 NM_001198863,NM_003915,NM_152925,NM_152926,NM_152927,NM_152928 214,219,214,214,214,214 7,7,7,7,8,8 tuple,tuple,tuple,tuple,tuple,tuple 627,642,627,627,627,627 55,55,55,55,55,55 167,167,167,167,167,167 NM_021203,NM_021203,NM_021203,NM_021203,NM_021203,NM_021203 110,110,110,110,110,110 5,5,5,5,5,5 tuple,tuple,tuple,tuple,tuple,tuple 328,328,328,328,328,328 816,816,816,816,816,816 58,58,58,58,58,58 174,174,174,174,174,174 STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL,STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL,STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL,STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL,STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL,STLFPYTTLFRSGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQVQCSGRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL CPNE1:NM_001198863[1,7]-SRPRB:NM_021203[5,8];CPNE1:NM_003915[1,7]-SRPRB:NM_021203[5,8];CPNE1:NM_152925[1,7]-SRPRB:NM_021203[5,8];CPNE1:NM_152926[1,7]-SRPRB:NM_021203[5,8];CPNE1:NM_152927[1,8]-SRPRB:NM_021203[5,8];CPNE1:NM_152928[1,8]-SRPRB:NM_021203[5,8] geneB_transcripts=NM_021203;reannotated geneA from CPNE1,RBM12 to CPNE1 GR,GR,GR,GR,GR,GR 0,0,0,0,0,0 MV4_11_RNAseq_1 NBEAL1 chr2 204055495 - intron ERH chr14 69864978 - 5utr > 14 1 135 347 0.930 0.000 175 7 0.050 0.000 136 121 667 2767 ACCAACTTTTTTTGGAGACAGACCCAGGGGGCCGATCATGGGGGCCAGGGCAGAAGTGGCACCGACTTCACCTCCGGTGCACCTCAGGTATACGACTTTGATCTCGTTGGGGTCGAACTTCGGCGGCATGGTGGAGGCAGCTGGTGTAGCGAAGAGAGTTTGGCGCGATGTCTCACACCATTTTGCTGGTACAGCCTACCAAGAGGCCAGAAGGCAGAACTTATGCTGACTACGAATCTGTGAATGAATGCATGGAAGGTGTTTGTAAAATGTATGAAGAACATCTGAAAAGAATGAATCCCAACAGTCCCTCTATCACATATGACATCAGTCAGTTGTTTGATTTCATCGATGATCTGGCAGACCTCAGCTGCCTGGTTTACCGAGCTGATACCCAGACATACCAGCCTTATAACAAAGACTGGATTAAAGAGAAGATCTACGTGCTCCTTCGTCGGCAGGCCCAACAGGCTGGG CTX 350.00 HQ 0 upTSS 0,2 NM_001114132, , 45, , , , , NM_004450,NM_004450 -9,-9 1, tuple,tuple , 315,315 48, , QLFLETDPGGRSWGPGQKWHRLHLRCTSGIRL*SRWGRTSAAWWRQLV*RREFGAMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAG, NBEAL1:NM_001114132[1,45]-ERH:NM_004450[1,4]; geneB_transcripts=NM_004450;geneb_utr_codons=10 , 2, MV4_11_RNAseq_1 PSMD3 chr17 38154211 + 3utr HSD17B11 chr4 88312266 - 5utr > 0 5 149 195 0.000 0.000 0 172 0.000 0.500 156 157 7 353 CCGATCTGGGTCCTGGCCAGCAGTGTGGGAGCAGGAGGGGAAGGATAGTTCTGTGTACTCCTTTAGGGAGTGGGGGACTAGAACTGGGATGTCTTGGCTTGTATGTTTTTTGAAGCTTCGATTATGATTTTTAAACAATAAAAAGTTCTCCACAGTAAAAAAAAAAAAAAAACACACCAAACGCTCGCAGCCACAAAAGGGATGAAATTTCTTCTGGACATCCTCCTGCTTCTCCCGTTACTGATCGTCTGCTCCCTAGAGTCCTTCGTGAAGCTTTTTATTCCTAAGAGGAGAAAATCAGTCACCGGCGAAATCGTGCTGATTACAGGAGCTGGGCATGGAATTGGGAGAC CTX 344.00 HQ 0 upTSS 0,2 NM_002809, , 12, , , , , NM_016245,NM_016245 -14,-14 1, tuple,tuple , , 55, , PIWVLASSVGAGGEG*FCVLL*GVGD*NWDVLACMFFEASIMIFKQ*KVLHSKKKKKTHQTLAATKGMKFLLDILLLLPLLIVCSLESFVKLFIPKRRKSVTGEIVLITGAGHGIGR, PSMD3:NM_002809[1,12]-HSD17B11:NM_016245[1,7]; geneB_CDS_mapping_exception=NM_016245:-2 geneB_transcripts=NM_016245;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 PELO,ITGA1 chr5 52096800 + coding CAP1 chr1 40525009 + 5utr > 0 9 82 232 0.000 0.000 1 139 0.000 0.080 86 73 139 830 GTGGAGGTGAACATCCCTAGGAAAAGGAAAGGCAATTGCTCTCAGCATGACCGGGCCTTGGAGCGGAACTCTGAGCAGGTGGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCTCATACCTCTGACATGCACCGTGGGTATGCAGACAGTCCTTCAAAAGCAGGAGCAGCTCCATATGTGCAGGCATTTGACTCGCTGCTTGCTGGTCCTGTGGCAGAGTACTTGAAGATCAGTAAAGAGATTGGGGGAGACGTGCAGAAACATGCGGAG CTX 278.00 HQ 0 upTSS 0,0,0,0,2,2 NM_015946,NM_181501,NM_015946,NM_181501,, ,,,,, 2,1,2,1,, ,,,,, 572,,572,,, ,,,,, ,,,,, NM_001105530,NM_001105530,NM_006367,NM_006367,NM_001105530,NM_006367 -3,-3,-3,-3,-3,-3 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, ,,,,, 28,28,28,28,, ,,,,, WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,WR*TSLGKGKAIALSMTGPWSGTLSRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAE,, PELO:NM_015946[1,2]-CAP1:NM_001105530[2,13];ITGA1:NM_181501[1,1]-CAP1:NM_001105530[2,13];PELO:NM_015946[1,2]-CAP1:NM_006367[2,13];ITGA1:NM_181501[1,1]-CAP1:NM_006367[2,13];; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=4 ,,,,, 1,1,1,1,, MV4_11_RNAseq_1 HMGB2 chr4 174253295 - coding PTPN6 chr12 7070044 + coding > 5 0 97 254 0.000 0.000 137 0 0.010 0.000 100 94 7483 2051 AAAGGATATTGCTGCATATCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAACGAACCAGAAGACAAGGAGAAGAGCAAGGGTTCCCTCAAGAGGAAGTGAGCGGTGCTGTCCTCAGGTGGCCATGCCTCAGCCCTGACCCTGTGGAAGCATTTCGCGATGGACAGACTCACAACCTGAACCTAGGAGTGCCCCATTCTTTTGTAATTTAAATGGCTGCATCCCCCCCACCTCTCCCTGACCCTGTATATAGCCCAGCCAGGCCCCAGGCAGGGCCAACCCTTCTCCTCTTGTAAATAAAGCCCTGGGATCAC CTX 274.00 HQ 0 Fusion 1,1,1,1,1,1 NM_001130688,NM_001130689,NM_002129,NM_001130688,NM_001130689,NM_002129 189,189,189,189,189,189 5,4,5,5,4,5 perfect,perfect,perfect,perfect,perfect,perfect 566,566,566,566,566,566 31,31,31,31,31,31 96,96,96,96,96,96 NM_002831,NM_002831,NM_002831,NM_080548,NM_080548,NM_080548 583,583,583,585,585,585 15,15,15,15,15,15 blat,blat,blat,blat,blat,blat 1749,1749,1749,1755,1755,1755 1788,1788,1788,1794,1794,1794 32,32,32,32,32,32 97,97,97,97,97,97 KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI,KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI,KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI,KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI,KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI,KDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDKEKSKGSLKRK*AVLSSGGHASALTLWKHFAMDRLTT*T*ECPILL*FKWLHPPHLSLTLYIAQPGPRQGQPFSSCK*SPGI HMGB2:NM_001130688[1,5]-PTPN6:NM_002831[15,16];HMGB2:NM_001130689[1,4]-PTPN6:NM_002831[15,16];HMGB2:NM_002129[1,5]-PTPN6:NM_002831[15,16];HMGB2:NM_001130688[1,5]-PTPN6:NM_080548[15,16];HMGB2:NM_001130689[1,4]-PTPN6:NM_080548[15,16];HMGB2:NM_002129[1,5]-PTPN6:NM_080548[15,16] geneB_no_inframe_contig_found geneB_transcripts=NM_002831,NM_080548,NM_080549;geneb_utr_codons=13 ,,,,, 1,1,1,1,1,1 MV4_11_RNAseq_1 PIM3,MIR6821 chr22 50357562 + 3utr POLR2E chr19 1095347 - 5utr > 0 4 246 264 0.000 0.000 0 135 0.000 0.200 248 243 221 478 NTCTGCCTCTCCCAAGCCCCAGGGGACAGTGGGGAGGCAGGGGAGGGGGTGGCTGTGGTCCAGGGACCCCAGGCCCTGATTCCTGTGCCTGGCGTCTGTCCTGGCCCCGCCTGTCAGAAGATGAACATGTATAGTGGCTAACTTAAGGGGAGTGGGTGACCCTGACACTTCCAGGCACTGTGCCCAGGGTTTGGGTTTTAAATTATTGACTTTGTACAGTCTGCTTGTGGGCTCTGAAAGCTGGGGTGCGAGCGGCGGCGGCGGCGGAGGCTGCCATGGACGACGAGGAGGAGACGTACCGGCTCTGGAAAATCCGCAAGACCATCATGCAGCTGTGCCACGACCGTGGCTATCTGGTGACCCAGGACGAGCTTGACCAGACCCTGGAGGAGTTCAAAGCCCAATTTGGGGACAAGCCGAGTGAGGGGCGGCCGCGGCGCACGGACCTCACCGTGCTGGTGGCCCACAACGATGACCCCACCGACCAGATGTTTGTGTTCTTTCCAG CTX 270.00 HQ 1 upTSS 0,2 NM_001001852, , 6, , , , , NM_002695,NM_002695 -10,-10 1, tuple,tuple , , 83, , LPLPSPRGQWGGRGGGGCGPGTPGPDSCAWRLSWPRLSEDEHV*WLT*GEWVTLTLPGTVPRVWVLNY*LCTVCLWALKAGVRAAAAAEAAMDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP, PIM3:NM_001001852[1,6]-POLR2E:NM_002695[1,8]; geneB_CDS_mapping_exception=NM_002695:-2 geneB_transcripts=NM_002695;geneb_utr_codons=11 , 2, MV4_11_RNAseq_1 CCT2 chr12 69987321 + coding NASP chr1 46082009 + coding > 0 3 79 289 0.000 0.530 1 125 0.000 0.010 81 94 1924 2051 GAAAGTTGAACGTATTCTTAAGCATGGAATAAATTGCTTTATTAACAGGCAATTAATTTATAATTATCCTGAACTGGCTCTGAAAGCTACTCTGGTGGAGAGTTCTACTTCAGGTTTCACTCCTGGTGGAGGAGGCTCTTCAGTCTCCATGATTGCCAGTAGAAAGCCAACAGACGGTGCTTCCTCATCAAATTGTGTGACTGATATTTCCCACCTTGTCAGAAAGAAGAGGAAACCAGAGGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGCAGTGGGGATGCTGTCCCCAGTGGAAATGAAGTTTCGGAAAACATGGAGGAGGAGGCTGAGAATCAGGCTGAAAGCCGAG CTX 250.00 HQ 0 Fusion 1,1,1,1,1,1 NM_001198842,NM_006431,NM_001198842,NM_006431,NM_001198842,NM_006431 255,302,255,302,255,302 10,10,10,10,10,10 tuple,tuple,tuple,tuple,tuple,tuple 769,910,769,910,769,910 23,23,23,23,23,23 72,72,72,72,72,72 NM_001195193,NM_001195193,NM_002482,NM_002482,NM_152298,NM_152298 611,611,675,675,336,336 10,10,12,12,11,11 tuple,tuple,tuple,tuple,tuple,tuple 1831,1831,2023,2023,1006,1006 2175,2175,2367,2367,1350,1350 31,31,31,31,31,31 94,94,94,94,94,94 KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR,KVERILKHGINCFINRQLIYNYPELALKATLVESSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR CCT2:NM_001198842[1,10]-NASP:NM_001195193[10,13];CCT2:NM_006431[1,10]-NASP:NM_001195193[10,13];CCT2:NM_001198842[1,10]-NASP:NM_002482[12,15];CCT2:NM_006431[1,10]-NASP:NM_002482[12,15];CCT2:NM_001198842[1,10]-NASP:NM_152298[11,14];CCT2:NM_006431[1,10]-NASP:NM_152298[11,14] geneB_transcripts=NM_001195193,NM_002482,NM_152298 LALKATL,LALKATL,LALKATL,LALKATL,LALKATL,LALKATL 1,1,1,1,1,1 MV4_11_RNAseq_1 IPO5 chr13 98674417 + 3utr PSMB4 chr1 151372065 + coding > 0 5 86 139 0.000 0.040 1 107 0.000 0.570 86 93 972 1278 CCGCCCACCTGAAGGGGAAAGGGAAATCAAATTAATTTTTCTCGTTAGACATAAGGAAATTTAAGGAAAAACAGCTTTAAGAACAGCTAAGATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGCCCCAGGACAGTTTTACCGCATTCCATCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCAGAGAT CTX 214.00 HQ 0 upTSS 0,2 NM_002271, , 29, , , , , NM_002796,NM_002796 1,1 1, tuple,tuple 2,2 795,795 30, , RPPEGEREIKLIFLVRHKEI*GKTALRTAKMEAFLGSRSGLWAGGPAPGQFYRIPSTPDSFMDPASALYRGPITRTQR, IPO5:NM_002271[1,29]-PSMB4:NM_002796[1,7]; geneB_transcripts=NM_002796 , 1, MV4_11_RNAseq_1 ATG13 chr11 46694317 - 3utr CD63 chr12 56121004 - coding > 2 1 142 264 0.000 0.000 71 6 0.060 0.000 143 134 236 3707 AGGCCTGTCATATTGCCAGAAATACAGGCATAGAGGCAAGAGAGAGAAGAAGAGGAGAAGAAGATAGCAGGAAGTAAAGGGGACAATGAAGAGAGCTAAGGGACTCCTTCCTTCTTCCTCCTGGCACTGTCTCCTTCCTCTTCCTGGTGGCTTTTGTGGGCTGCTGCGGGGCCTGCAAGGAGAACTATTGTCTTATGATCACGTTTGCCATCTTTCTGTCTCTTATCATGTTGGTGGAGGTGGCCGCAGCCATTGCTGGCTATGTGTTTAGAGATAAGGTGATGTCAGAGTTTAATAACAACTTCCGGCAGCAGATGGAGAATTACCCGAAAAACAACCACACTGCTTCGAGCCTGGACAGGATGCAGGCAGATTTTAAGTGCTGTGGGGCTGCTAAC CTX 142.00 HQ 0 upTSS 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3,2,2,3,3 NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,NM_001142673,NM_001205119,NM_001205120,NM_001205121,NM_001205122,NM_014741,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,18,18,17,17,15,17,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257389,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257390,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257391,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257392,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257400,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001257401,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001267698,NM_001780,NM_001780,NM_001780,NM_001780,NM_001780,NM_001780,NM_001257389,NM_001257390,NM_001257391,NM_001257392,NM_001257400,NM_001257401,NM_001267698,NM_001780 62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,39,39,39,39,39,39,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,-20,62,62,62,62,62,62,62,62,62,62,62,62,62,62,62,39,-20,-20,62,62 3,3,3,3,3,3,3,3,3,3,3,3,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,3,3,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,tuple,tuple,blat,blat 186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,117,117,117,117,117,117,,,,,,,,,,,,,186,186,186,186,186,186,186,186,186,186,186,186,186,186,186,117,,,186,186 717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,648,648,648,648,648,648,471,471,471,471,471,471,471,471,471,471,471,471,717,717,717,717,717,717,717,717,717,717,717,717,717,717,717,648,471,471,717,717 44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,46,46,46,46,46,46,46,46,46,46,46,46,44,44,44,44,44,44,44,44,44,44,44,44,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,ACHIARNTGIEARERRRGEEDSRK*RGQ*RELRDSFLLPPGTVSFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASSLDRMQADFKCCGAAN,,,,,,,, ATG13:NM_001142673[1,18]-CD63:NM_001257389[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001257389[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001257389[3,8];ATG13:NM_014741[1,17]-CD63:NM_001257389[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001257390[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001257390[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001257390[3,8];ATG13:NM_014741[1,17]-CD63:NM_001257390[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001257391[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257391[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257391[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257391[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257392[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257392[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257392[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257392[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257400[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257400[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257400[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257400[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001257401[2,7];ATG13:NM_001205119[1,18]-CD63:NM_001257401[2,7];ATG13:NM_001205120[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001205121[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001205122[1,15]-CD63:NM_001257401[2,7];ATG13:NM_014741[1,17]-CD63:NM_001257401[2,7];ATG13:NM_001142673[1,18]-CD63:NM_001267698[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001267698[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001267698[3,8];ATG13:NM_014741[1,17]-CD63:NM_001267698[3,8];ATG13:NM_001142673[1,18]-CD63:NM_001780[3,8];ATG13:NM_001205119[1,18]-CD63:NM_001780[3,8];ATG13:NM_001205120[1,17]-CD63:NM_001780[3,8];ATG13:NM_001205121[1,17]-CD63:NM_001780[3,8];ATG13:NM_001205122[1,15]-CD63:NM_001780[3,8];ATG13:NM_014741[1,17]-CD63:NM_001780[3,8];;;;;;;; geneB_transcripts=NM_001257389,NM_001257390,NM_001257391,NM_001257392,NM_001257400,NM_001257401,NM_001267698,NM_001780;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,, MV4_11_RNAseq_1 RLF chr1 40598509 - intergenic UBE2M chr19 59069754 - coding > 0 3 79 170 0.480 0.510 1 102 0.010 0.180 86 89 0 229 GGGAGACCCTGGAACTCTCACTGCTGCTGCCGCCGCGGCTGTGCAGGCTTAGGAGCGGCATGGTGCGGCTGGCGTGGATGGTGGCGGCGGCAGGATGATCAAGCTGTTCTCGCTGAAGCAGCAGAAGAAGGAGGAGGAGTCGGCGGGCGGCACCAAGGGCAGCAGCAAGAAGGCGTCGGCGGCGCAGCTGCGGATCCAGAAGGACATAAACGAGCTGAACCTGCCCAAGACGTGTGATATCAGCTTCTCAGATCCAGAC CTX 107.06 HQ 1 upTSS 2 NM_003969 -1 tuple 552 geneA_no_transcript_IDs_found geneB_transcripts=NM_003969;geneb_utr_codons=2 MV4_11_RNAseq_1 TRPM7 chr15 50852588 - 3utr CORO1A chr16 30196530 + coding > 1 6 344 58 0.000 0.000 74 53 0.030 0.010 345 362 236 4689 ATTTGAACATGAATGCTGTTTGTGGTACTTAAGAAATTAATTCAGTTGGATTATCATTATGTGATACTGGCAGATTGCAGTGCAACCTTATGCCAATAAAATGTAATTTAACAGCCCCAGATATTGTTGAATATTCAACAATAACAAGCAAAGCTTTTCATCTAAGTTTTATGCTTTAATTTTTTTTCTTTTTTTTTCTTTTTCTTTTGTTTCCTTGGTACTAATTTTAATTTTTATTTGGAAGGGAGCAGTATAAAGCTTATTTGTATTTAGTAGTGTATCTCATAGATACAGACAAGGCAAGAGATGATAAGCTGTTTAAATAGTGTTTAATATTGATTGGGGAGTCCTCTCTCGGCAGCAGAATGAGCCGGCAGGTGGTCCGCTCCAGCAAGTTCCGCCACGTGTTTGGACAGCCG CTX 106.03 HQ 0 upTSS 0,0,0,0,2,2 NM_001301212,NM_017672,NM_001301212,NM_017672,, ,,,,, 39,39,39,39,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001193333,NM_001193333,NM_007074,NM_007074,NM_001193333,NM_007074 0,0,0,0,0,0 3,3,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 1386,1386,1386,1386,1386,1386 121,121,121,121,, ,,,,, LNMNAVCGT*EINSVGLSLCDTGRLQCNLMPIKCNLTAPDIVEYSTITSKAFHLSFML*FFFFFFLFLLFPWY*F*FLFGREQYKAYLYLVVYLIDTDKARDDKLFK*CLILIGESSLGSRMSRQVVRSSKFRHVFGQP,LNMNAVCGT*EINSVGLSLCDTGRLQCNLMPIKCNLTAPDIVEYSTITSKAFHLSFML*FFFFFFLFLLFPWY*F*FLFGREQYKAYLYLVVYLIDTDKARDDKLFK*CLILIGESSLGSRMSRQVVRSSKFRHVFGQP,LNMNAVCGT*EINSVGLSLCDTGRLQCNLMPIKCNLTAPDIVEYSTITSKAFHLSFML*FFFFFFLFLLFPWY*F*FLFGREQYKAYLYLVVYLIDTDKARDDKLFK*CLILIGESSLGSRMSRQVVRSSKFRHVFGQP,LNMNAVCGT*EINSVGLSLCDTGRLQCNLMPIKCNLTAPDIVEYSTITSKAFHLSFML*FFFFFFLFLLFPWY*F*FLFGREQYKAYLYLVVYLIDTDKARDDKLFK*CLILIGESSLGSRMSRQVVRSSKFRHVFGQP,, TRPM7:NM_001301212[1,39]-CORO1A:NM_001193333[3,12];TRPM7:NM_017672[1,39]-CORO1A:NM_001193333[3,12];TRPM7:NM_001301212[1,39]-CORO1A:NM_007074[2,11];TRPM7:NM_017672[1,39]-CORO1A:NM_007074[2,11];; geneB_transcripts=NM_001193333,NM_007074;geneb_utr_codons=1;reannotated geneB from CORO1A,LOC606724_locB to CORO1A ,,,,, 2,2,2,2,, MV4_11_RNAseq_1 COA1 chr7 43678858 - 3utr RBMXL1 chr1 89449519 - coding > 3 2 66 187 0.000 0.750 188 12 0.220 0.050 67 81 34 169 GTATTTAAAAGTGCTTTCTATAAAAAAGAACATGATAAAAAGAATAACAATTAATAAAATGTTTGTTGATCTAAAAAAAAAAAAAAAAAAATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAACAGTATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATAAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCTG CTX 94.27 HQ 0 upTSS 0,0,2,2 NM_018224,NM_018224,, ,,, 6,6,, ,,, ,,, ,,, ,,, NM_001162536,NM_019610,NM_001162536,NM_019610 -3,-3,-3,-3 3,2,, tuple,tuple,tuple,tuple ,,, 1173,1173,1173,1173 29,29,, ,,, VFKSAFYKKEHDKKNNN**NVC*SKKKKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESP,VFKSAFYKKEHDKKNNN**NVC*SKKKKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESP,, COA1:NM_018224[1,6]-RBMXL1:NM_001162536[3,3];COA1:NM_018224[1,6]-RBMXL1:NM_019610[2,2];; geneB_breakpoint_not_mapped_to_CDS=NM_001008661;geneB_breakpoint_not_mapped_to_CDS=NM_001008662 geneB_transcripts=NM_001008661,NM_001008662,NM_001162536,NM_019610;geneB_intronic=NM_001008661;geneB_intronic=NM_001008662;geneb_utr_codons=4;reannotated geneB from CCBL2,RBMXL1 to RBMXL1 ,,, 0,0,, MV4_11_RNAseq_1 MBNL1 chr3 151987493 - intron DDX39A chr19 14524036 - coding > 2 7 178 67 0.000 0.000 126 42 0.070 0.110 179 176 96 2073 CTAAAAACCAGAACCCAAGTACTAACTACTTTTCATTCTTTTCAACCTTTCATGAAAGCAATTCAACCAACTGCGGCTCCACCCAAAGAGCTTCTATACTTACTTTTCTTACAGTTTTTGAGTGACGCACTACAAAACGATGAAAAAAAAAAAGAAGAAGAAGAAAAGGAGGAGGCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAG CTX 88.62 HQ 1 upTSS 0,0,2 NM_021038,NM_207292, ,, 1,1, ,, ,, ,, ,, NM_005804,NM_005804,NM_005804 -1,-1,-1 2,2, tuple,tuple,tuple ,, 1284,1284,1284 60,60, ,, KNQNPSTNYFSFFSTFHESNSTNCGSTQRASILTFLTVFE*RTTKR*KKKRRRRKGGGSIMAEQDVENDLLDYDEEEEPQ,KNQNPSTNYFSFFSTFHESNSTNCGSTQRASILTFLTVFE*RTTKR*KKKRRRRKGGGSIMAEQDVENDLLDYDEEEEPQ, MBNL1:NM_021038[1,1]-DDX39A:NM_005804[2,11];MBNL1:NM_207292[1,1]-DDX39A:NM_005804[2,11]; geneB_transcripts=NM_005804;geneb_utr_codons=2 ,, 2,2, MV4_11_RNAseq_1 METAP2 chr12 95861652 + intergenic VPS29 chr12 110939905 - 3utr > 1 3 29 145 0.960 0.030 17 70 0.510 0.180 30 56 1 153 CTTGGACTTGGCCATGTCTGCACCATAAGCCGCGGCTCCCGAAGCGCCTAGATGAGGAAGAGGGCGGCGACGGTGGTGGTGACTGAGCGGAGCCCGGTGACAGGATGGCTGGGCACAGATTGGTGTTGGTATTAGGAGATCTGCACATCCCACACCGGTGCAACAGTTTGCCAGCTAAATTCAAAAAACTCCTGGTGCCAGAGATCGGAAGAGCA ITX 32.98 HQ 0 upTSS 3,0,2,2,2 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001282150,NM_001282150,NM_001282151,NM_016226,NM_057180 -35,-35,-16,-16,-16 ,,,, blat,tuple,tuple,tuple,tuple ,,,, 645,645,276,549,561 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001282150 geneB_transcripts=NM_001282150,NM_001282151,NM_016226,NM_057180;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 CHCHD3 chr7 132720538 + intron PRDX1 chr1 45984726 - 5utr > 5 1 213 332 0.690 0.000 86 51 0.000 1.000 214 227 970 793 TGATGCCCAAGGTGGGGAACACCCAGGTACTGGCTGGGGGCACTATATCGGAATCAGCAAAGCTCACGCACTGCACCACCTGGGCTGCTGCCTCTGGAGTACTTCCCCGCAGCTCCTCATTGCTCACATAGTAGGCAATGGCGTTGCTCTCAAACACACAGAATCCATCATCACCCTCAAATGCTGGGACCTTGCCGGCAGGAAATTTGCGGAGAAATTCAGGGGTGTGGTTAGTTTCTGCGACTTGTGTTGGGACTGCTGATAGGAAGATGTCTTCAGGAAATGCTAAAATTGGGCACCCTGCCCCCAACTTCAAAGCCACAGCTGTTATGCCAGATGGTCAGTTTAAAGATATCAGCCTGTCTGACTACAAAGGAAAATATGTTGTGTTCTTCTTTTACCCTCTTGACTTCACCTTTGTGTGCCCCACGGAGATCATTGCTTTCAGTGATAGGGCAGAAGAATTTAAGAAACTCAACTGCCAAGTGATTGGTGCTTCTGTGGATTCTCACTTCTGTCATCTAGCATGGGTCAATACACCTAAGAAACAAGGAGGAC CTX 31.62 HQ 0 upTSS 0,0,0,0,2,3,3,3 NM_017812,NM_017812,NM_017812,NM_017812,,,, ,,,,,,, 2,2,2,2,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001202431,NM_002574,NM_181696,NM_181697,NM_001202431,NM_002574,NM_181696,NM_181697 -3,-87,-78,-14,-3,-87,-78,-14 2,1,1,1,,,, tuple,blat,blat,tuple,tuple,blat,blat,tuple ,,,,,,, 600,600,600,600,600,600,600,600 88,89,89,77,,,, ,,,,,,, MPKVGNTQVLAGGTISESAKLTHCTTWAAASGVLPRSSSLLT**AMALLSNTQNPSSPSNAGTLPAGNLRRNSGVWLVSATCVGTADRKMSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGG,MPKVGNTQVLAGGTISESAKLTHCTTWAAASGVLPRSSSLLT**AMALLSNTQNPSSPSNAGTLPAGNLRRNSGVWLVSATCVGTADRKMSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGG,MPKVGNTQVLAGGTISESAKLTHCTTWAAASGVLPRSSSLLT**AMALLSNTQNPSSPSNAGTLPAGNLRRNSGVWLVSATCVGTADRKMSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGG,MPKVGNTQVLAGGTISESAKLTHCTTWAAASGVLPRSSSLLT**AMALLSNTQNPSSPSNAGTLPAGNLRRNSGVWLVSATCVGTADRKMSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGG,,,, CHCHD3:NM_017812[1,2]-PRDX1:NM_001202431[2,6];CHCHD3:NM_017812[1,2]-PRDX1:NM_002574[1,6];CHCHD3:NM_017812[1,2]-PRDX1:NM_181696[1,6];CHCHD3:NM_017812[1,2]-PRDX1:NM_181697[1,6];;;; geneB_transcripts=NM_001202431,NM_002574,NM_181696,NM_181697;geneb_utr_codons=4;geneb_utr_codons=13 ,,,,,,, 2,2,2,2,,,, MV4_11_RNAseq_1 FAIM3 chr1 207081475 - intron DDT chr22 24316620 - 5utr > 0 3 97 199 0.940 0.670 0 120 0.010 0.500 101 101 2 111 CTCAGACCAGGAGTCCGTGGGTCTTGAGGACCTCTGTGTATTTGTCAATTTTCTTCTACACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCCGTTCCTCTGCCCGCCATGCCGTTCCTGGAGCTGGACACGAATTTGCCCGCCAACCGAGTGCCCGCGGGGCTGGAGAAACGACTCTGCGCCGCCGCTGCCTCCATCCTGGGCAAACCTGCGGACCGCGTGAACGTGACGGTACGGCCGGGCCTGGCCATGGCGCTGAGCGGGTCCACCGAGCCCTGCGCGCAGCTGTCC CTX 14.40 HQ 0 upTSS 0,0,0,0,0,0,2,2 NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,, ,,,,,,, 6,6,7,6,6,7,, ,,,,,,, 708,913,1044,708,913,1044,, ,,,,,,, ,,,,,,, NM_001084392,NM_001084392,NM_001084392,NM_001355,NM_001355,NM_001355,NM_001084392,NM_001355 -5,-5,-5,-5,-5,-5,-5,-5 1,1,1,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,, 357,357,357,357,357,357,357,357 36,36,36,36,36,36,, ,,,,,,, LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,LRPGVRGS*GPLCICQFSSTRSSRPVSVAS*AVSVPLPAMPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLS,, FAIM3:NM_001142473[1,6]-DDT:NM_001084392[1,3];FAIM3:NM_001193338[1,6]-DDT:NM_001084392[1,3];FAIM3:NM_005449[1,7]-DDT:NM_001084392[1,3];FAIM3:NM_001142473[1,6]-DDT:NM_001355[2,4];FAIM3:NM_001193338[1,6]-DDT:NM_001355[2,4];FAIM3:NM_005449[1,7]-DDT:NM_001355[2,4];; geneB_transcripts=NM_001084392,NM_001355;geneb_utr_codons=6 ,,,,,,, 0,0,0,0,0,0,, MV4_11_RNAseq_1 MINOS1P1 chr13 33070928 - 3utr MINOS1 chr1 19923486 + 5utr > 0 4 33 177 0.000 0.000 1 122 0.010 0.160 41 42 20 38 CGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAACATGTCTGGGTCGGAGCGCGGGGGCCGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAACATGTCTGAGTCGGAGCTCGGCAGGAAGTGGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAGGTACTGGTTTTGGATTAGGAATTGTTTTCTCACTTACCTTCTTTAAAAGAAGAATGTGG CTX 2.00 HQ 0 upTSS 0,0,0,0,0,0,0,0,0,0,2,2,2,0,0 NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,NM_001278432,NM_033111,,,,, ,,,,,,,,,,,,,, 6,6,6,6,6,6,6,6,6,6,,,,, ,,,,,,,,,,,,,, 365,410,365,410,365,410,365,410,365,410,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001032363,NM_001032363,NM_001204082,NM_001204082,NM_001204083,NM_001204083,NM_001204088,NM_001204088,NM_001204089,NM_001204089,NM_001032363,NM_001204082,NM_001204083,NM_001204088,NM_001204089 -17,-17,-17,-17,-17,-17,-93,-93,-45,-45,-17,-17,-17,-93,-45 1,1,1,1,1,1,1,1,1,1,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,, 237,237,189,189,423,423,588,588,546,546,237,189,423,588,546 17,17,17,17,17,17,16,16,16,16,,,,, ,,,,,,,,,,,,,, RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,RPRGKLEARVGNMSGSERGGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMW,GREESWRRGWGTCLGRSAGAGREESWRRGWGTCLSRSSAGSGTGVWRMRS*R*VLVLD*ELFSHLPSLKEEC,GREESWRRGWGTCLGRSAGAGREESWRRGWGTCLSRSSAGSGTGVWRMRS*R*VLVLD*ELFSHLPSLKEEC,AERKAGGAGGEHVWVGARGPAERKAGGAGGEHV*VGARQEVGPVSGGCGREDRYWFWIRNCFLTYLL*KKNV,AERKAGGAGGEHVWVGARGPAERKAGGAGGEHV*VGARQEVGPVSGGCGREDRYWFWIRNCFLTYLL*KKNV,,,,, N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001032363[1,4];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001032363[1,4];N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001204082[1,3];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001204082[1,3];N4BP2L2:NM_001278432[1,6]-MINOS1:NM_001204083[1,5];N4BP2L2:NM_033111[1,6]-MINOS1:NM_001204083[1,5];N4BP2L2:NM_001278432[1,6]-MINOS1-NBL1:NM_001204088[1,5];N4BP2L2:NM_033111[1,6]-MINOS1-NBL1:NM_001204088[1,5];N4BP2L2:NM_001278432[1,6]-MINOS1-NBL1:NM_001204089[1,4];N4BP2L2:NM_033111[1,6]-MINOS1-NBL1:NM_001204089[1,4];;;;; geneB_transcripts=NM_001032363,NM_001204082,NM_001204083,NM_001204088,NM_001204089;geneb_utr_codons=13;reannotated geneB from MINOS1,MINOS1-NBL1,NBL1 to MINOS1 ,,,,,,,,,,,,,, 0,0,0,0,0,0,1,1,2,2,,,,, MV4_11_RNAseq_1 MTRNR2L1 chr17 22030312 - intergenic DNAJC11 chr1 6761887 - 5utr > 0 3 29 185 0.840 0.000 1 72 0.010 1.000 39 37 0 4 GAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGTTTGGCGGGGTGAAAGGTTGCGAAGATGGCGACGGCCTTGAGCGAGGAGGAGCTGGACAATGAAGACTATTACTCGTTGCTGAACGTGCGCAGGGAGGCCTCTTCTGAAGAGCTGAAAGCTGCCTACCGGAGGCTCTGTATGCTCTACCATCCAGACAAGCACAGAGACCCAGAGCTCAAGTC CTX 2.00 HQ 0 upTSS 2 NM_018198 -8 tuple 1680 geneA_no_transcript_IDs_found geneB_transcripts=NM_018198;geneb_utr_codons=9 MV4_11_RNAseq_1 TFPI2 chr7 93495290 + intergenic GNB2L1 chr5 180670901 - 5utr > 0 11 30 381 0.000 0.040 1 76 0.010 0.290 59 51 0 406 CTGGGTTACCCAGCCGTTGTGGCCCTTGAGGGTGCCCTTTTCTCTCTTCTTTCCCTGCAAGGCGGCGGCAGGAGAGGTTGTGGTGCTAGTTTCTCTAAGCCATCCAGTGCCATCCTCGTCGCTGCAGCGACACACGCTCTCGCCGCCGCCATGACTGAGCAGATGACCCTTCGTGGCACCCTCAAGGGCCACAACGGCTGGGTAACCCAGATCGCTACTACCCCGCAGTTCCCGGACATGATCCTCTCCGCCTCTCGAGATAAGACCATCATCATGTGGAAACTGACCAGGGATGAGACCAACTATGGAATTCCACAGCGTGCTCTGCGGGGTCACTCCCACTTTGTTAGTGATGTGGTTATCTCCTCAGATGGCCAGTTTGCCCTCTCAGGCTCCTGGGATGGAACCCTGCGCCTCTGGGATCTCACAACGGG CTX 1.92 HQ 0 upTSS 2 NM_006098 -33 tuple 954 geneA_no_transcript_IDs_found geneB_transcripts=NM_006098;geneb_utr_codons=13 MV4_11_RNAseq_1 KMT2A chr11 118353211 + coding AFF1 chr4 88011136 + coding > 2 0 93 62 0.000 0.000 116 1 0.500 0.000 94 91 13 5 CTCCACCACCAGAATCAGGTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAGGAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAG CTX 0.35 HQ 4 Fusion 1,1,1,1 NM_001197104,NM_005933,NM_001197104,NM_005933 1363,1363,1363,1363 8,8,8,8 perfect,perfect,perfect,perfect 4086,4086,4086,4086 29,29,29,29 91,91,91,91 NM_001166693,NM_001166693,NM_005935,NM_005935 369,369,362,362 6,6,5,5 tuple,tuple,tuple,tuple 1105,1105,1084,1084 3657,3657,3633,3633 30,30,30,30 92,92,92,92 PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE,PPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAE KMT2A:NM_001197104[1,8]-AFF1:NM_001166693[6,21];KMT2A:NM_005933[1,8]-AFF1:NM_001166693[6,21];KMT2A:NM_001197104[1,8]-AFF1:NM_005935[5,20];KMT2A:NM_005933[1,8]-AFF1:NM_005935[5,20] geneB_transcripts=NM_001166693,NM_005935 ,,, 2,2,2,2 MV4_11_RNAseq_1 FLT3 chr13 28608271 - coding FLT3 chr13 28608301 - coding > 1 125 50 166 0.000 0.000 103 1199 0.000 0.400 50 50 1670 1468 CCAGCTACAGATGGTACAGGTGACCGGCTCCTCAGATAATGAGTACTTCTACGTTGATTTCAGAGAATATGAATATGATCACGTTGATTTCAGAGAATATGAATATGATCTCAAATGGGAGTTTCCAAGAGAAAATTTAGAGTTTGGGAAGGTACTAGGATCAGGTGCTTTTGGAAAAGTGATGAACGCAACAGCTTATGGAATTAGCAAAACAG Internal_dup 0.01 HQ 4 ITD 1 NM_004119 585 14 perfect 1785 9 30 NM_004119 585 14 tuple 1755 2982 10 31 QLQMVQVTGSSDNEYFYVDFREYEYDHVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKT FLT3:NM_004119[1,14]-FLT3:NM_004119[14,24] geneB_transcripts=NM_004119 1 MV4_11_RNAseq_1 HNRNPU chr1 245018843 - coding NA chr14 43769471 + intergenic > 18 0 138 86 0.000 0.000 957 1 0.030 0.010 204 202 3327 0 CTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAG CTX 958.00 LQ 0 CLoss , NM_004501,NM_031844 , , , 2178,2235 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 HNRNPU chr1 245018843 - coding NA chr14 43769471 + intergenic > 14 0 129 86 0.070 0.000 917 1 0.030 0.010 186 197 3327 0 CTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGAGGATTCAATATGCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCACAGAGAGGTGGTGGCGGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAG CTX 917.93 LQ 0 CLoss , NM_004501,NM_031844 , , , 2178,2235 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 PABPC1,MIR7705 chr8 101715146 - 3utr RTN4 chr2 55199953 - 3utr > 64 0 55 376 0.920 0.000 574 0 1.000 0.000 56 55 4941 1120 AAGGAAACGTAATTTGGATTATAAGATTCTTGCTTTAATAAAAATTCCTTAAACAGCTAAAAAAAAAAAAAAAAAAGCCCTTTTCAGTTTGTGCACTGTGTATGGTCCGTGTAGATTGATGCAGATTTTCTGAAATGAAATGTTTGTTTAGACGAGATCATACCGGTAAAGCAGGAATGACAAAGCTTGCTTTTCTGGTATGTTCTAGGTGTATTGTGACTTTTACTGTTATATTAATTGCCAATATAAGTAAATATAGATTATATATGTATAGTGTTTCACAAAGCTTAGACCTTTACCTTCCAGCCACCCCACAGTGCTTGATATTTCAGAGTCAGTCATTGGTTATACATGTGTAGTTCCAAAGCACATAAGCTAGAAGAAGAAATATTTCTAGGAGCACTACCATCTGTTTTCAACATGAAATGCCA CTX 574.00 LQ 0 other ,,,, NM_002568,NM_002568,NM_002568,NM_002568,NM_002568 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_007008,NM_020532,NM_153828,NM_207520,NM_207521 ,,,, ,,,, ,,,, ,,,, 600,3579,1122,1179,2961 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_007008,NM_020532,NM_153828,NM_207520,NM_207521;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 NA chr11 27909719 - intergenic HSP90AA1 chr14 102547513 - 3utr > 0 78 79 83 0.660 0.800 1 1651 0.000 0.010 87 79 7 21535 TCAGACCCAGTCTTGTGGATGGAAATGTAGTGCTCGAGTCACATTCTGCTTAAAGTTGTAACAAATACAGATGAGCAAAGTTAAAAGCCTACCTAAGCATATCGTAAAGCTGTTCAAAAATAACTCAGACCCAGTCTTGTGGATGGAAATGTAGTGCTCGAG CTX 561.34 LQ 2 other , , , , , , , , NM_001017963,NM_005348 , , , , 2565,2199 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001017963,NM_005348;geneb_utr_codons=13 , , MV4_11_RNAseq_1 SYNE3 chr14 95882448 + intergenic HSP90AA1 chr14 102547513 - 3utr > 0 78 76 83 0.670 0.800 1 1651 0.000 0.010 79 79 16 21535 TCAGACCCAGTCTTGTGGATGGAAATGTAGTGCTCGAGTCACATTCTGCTTAAAGTTGTAACAAATACAGATGAGCAAAGTTAAAAGCCTACCTAAGCATATCGTAAAGCTGTTCAAAAATAACTCAGACCCAGTCTTGTGGATGGAAATGTAGTGCTCGAG ITX 544.83 LQ 2 other 0,0 NM_152592,NM_152592 , , , , , , NM_001017963,NM_005348 , , , , 2565,2199 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001017963,NM_005348;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16342639 - 5utr BAZ1A chr14 35253020 - coding > 44 0 141 136 0.130 0.000 492 0 0.270 0.000 142 156 2961 294 CCTGGCTACAATACTCACACGCCCAACATGATGCTGATTCTTCACGAATTTGCAACCCAGTTCTCTCGGGTTTGCACACCCCCACTGTGGGCCGGGGAACCGGGTCCCGGCCTTCGCAGACTCCAGGCTCTGGCAGATGTGGCCCTCCATAACAACGGGAATGAAAAGCAGAACAACATCGAAAAGAGAGGGAAGAAGCAGCTGCCAGAATTCGTAAAAGGAAGGAAGAAAAACTTAAGGAGCAAGAACAAAAAATGAAAGAGAAACAAGAAAAACTGAAAGAAGATGAGCA CTX 492.00 LQ 0 NLoss 3,3 , , , , , , , NM_013448,NM_182648 649,617 , blat,blat 1945,1849 4671,4575 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_013448,NM_182648 , , MV4_11_RNAseq_1 GOLGA6L10 chr15 82664942 + intron DUSP3 chr17 41846184 - 3utr > 66 0 135 144 0.800 0.000 436 0 0.010 0.000 136 135 26426 382 TGAGCATAAACGGACCTCATTTTGTAACGGAAGCCCATTTTAACCCCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGTTACCCCACCATTTGTCAACCCGGAGCCTTTTTTTTTTTTTCTTTTTTAGAAAACAGGGAGTTGAAGTCCAACCTATTTAAAAACCCCACCATTTGGAGAATTACAAGGGTTTTGTCCTGAATTGTAGTGTTGGCAAGCCCAAGCCACTCGTGCTAACTGCTTTTTGTCTCGG CTX 436.00 LQ 0 other NM_001164465 NM_004090 558 geneB_no_inframe_contig_found geneB_transcripts=NM_004090;geneb_utr_codons=13 MV4_11_RNAseq_1 GOLGA6L17P,GOLGA6L9_locB chr15 83041483 + intron DUSP3 chr17 41846184 - 3utr > 66 0 135 144 0.800 0.000 436 0 0.010 0.000 136 135 26961 382 TGAGCATAAACGGACCTCATTTTGTAACGGAAGCCCATTTTAACCCCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGTTACCCCACCATTTGTCAACCCGGAGCCTTTTTTTTTTTTTCTTTTTTAGAAAACAGGGAGTTGAAGTCCAACCTATTTAAAAACCCCACCATTTGGAGAATTACAAGGGTTTTGTCCTGAATTGTAGTGTTGGCAAGCCCAAGCCACTCGTGCTAACTGCTTTTTGTCTCGG CTX 436.00 LQ 0 other NM_001291420-locB NM_004090 558 geneB_no_inframe_contig_found geneB_transcripts=NM_004090;geneb_utr_codons=13 MV4_11_RNAseq_1 FTL chr19 49470128 + 3utr ZFP36L2 chr2 43451148 - 3utr > 29 0 55 89 0.730 0.000 411 0 0.430 0.000 56 63 3392 513 ATAGGCAGCTTTTTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTTTTGATACAAAAAAAAAAAAAAAACACTTAAACTTTGTTAGGACTCCGATGAGTTTGGGACTTCAGGAAAAATCAACCCAGCACCAGCAGCTACC CTX 411.00 LQ 0 other NM_000146 NM_006887 1485 geneB_no_inframe_contig_found geneB_transcripts=NM_006887;geneb_utr_codons=13 MV4_11_RNAseq_1 MAP3K9 chr14 71265495 + intron HSD17B12 chr11 43877440 + 3utr > 12 35 304 444 0.990 0.000 380 1651 1.000 0.820 305 306 38 174 TTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 396.51 LQ 1 other , NM_001284230,NM_033141 , , , , , , NM_016142,NM_016142 , , , , 939,939 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HSD17B12 chr11 43877448 + 3utr CNKSR3 chr6 154741848 - intron > 18 7 353 301 0.000 0.990 835 370 0.700 1.000 353 355 162 25 CAGAATGATAGACTCAAGCATAAAACTTGGCAGTTTTATCTGCTTCAAAATGCCATTGATCATTATTCCTGTATTTTCTCTGAAACTGATTATAAAAACCAATGTCCAGCTACTCTTTTGACACTTGAAGAAATGGAGATCGATTTGATTTGTTTATAAGCAGACACACTGCAATTTACAAAGATCTCTTTACGGTTTTATAAAATTATCTTCCAGTTTGTACATTTATATGGAATTGTTCTTTATCAAGGGTAGCTAATGACATGAAAATAATTGTGAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC CTX 378.35 LQ 0 other NM_016142 NM_173515 945 1668 geneB_no_inframe_contig_found geneB_transcripts=NM_173515 MV4_11_RNAseq_1 TSPAN9 chr12 3321100 + intron GNB2L1 chr5 180664023 - coding > 15 0 313 87 0.900 0.000 355 1 0.260 0.000 314 323 561 11469 GTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTAGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGGCTAAAGACCGTGGTGATTTTATAGCATCCTGGGCATTTCACATCCATGAAGTAGGAATTGGGGCTCTGCACCAGGCGTTTCTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGTTCTCGTGTGCGTAGGTCGTCACCGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTACAAATAAAAAAAAAAACTGGC CTX 355.00 LQ 0 NLoss 0,0,0 NM_001168320,NM_006675, ,, 2,3, ,, 63,63, ,, ,, NM_006098,NM_006098,NM_006098 303,303,303 8,8, blat,blat,blat 908,908,908 954,954,954 108,108, ,, VY*DGFPLILTQSAFSAASS*RNILL*ALLFLL*AGRGQWSSQHTKLPFVHG*RPW*FYSILGISHP*SRNWGSAPGVSSCVSSSPLLERDEGDPLREACSRVRRSSPDNLVRVWQVTIGTR*KFMAELYK*KKKL,VY*DGFPLILTQSAFSAASS*RNILL*ALLFLL*AGRGQWSSQHTKLPFVHG*RPW*FYSILGISHP*SRNWGSAPGVSSCVSSSPLLERDEGDPLREACSRVRRSSPDNLVRVWQVTIGTR*KFMAELYK*KKKL, TSPAN9:NM_001168320[1,2]-GNB2L1:NM_006098[8,8];TSPAN9:NM_006675[1,3]-GNB2L1:NM_006098[8,8]; geneB_transcripts=NM_006098 ,, 0,0, MV4_11_RNAseq_1 SERF2,SERF2-C15ORF63,HYPK chr15 44086244 + 3utr RQCD1 chr2 219460474 + 3utr > 32 0 84 382 0.510 0.000 313 0 0.380 0.000 85 91 340 424 CCCGGGGGTGAGGGGGTTCCCCCTTCCCAGTGTTTTTTATTCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCACAAAAAAAAAAAAAAAACCCATTTGCAGAGGCAGTTTTGCCAACACAAGGGCTCTTTCAAGCCGACTTTCACAAAGAGAGCCGGACTTGTTAGTTGGCTTCTGTCTCTTTAGAGCCAAGAAAATAGTAATTAAGTGGCCTAGATATAGGAAGGGCAGAATAAGCACTTACTCCCCCTGCCTTCCAAGATGAAGAGGAGAAGCAGGCCAACCCTCAATAATTGCAAGCCTGAAGAGAAGTGATCTTAGAGAAAGCAGAGAACAGAATGGACTGGATAGACATCTTGACTCTATTCAGCCCGTAGTCTGTGATCTGGAGAGTCCAGTTAAGGTAACCCAGATTTTTGACAACCGCCTTCCTGCTGAGCCAAAGTTTTCTCATTACCCC CTX 313.00 LQ 0 other ,,,,,,,,, NM_001018108,NM_001018108,NM_001199875,NM_001199875,NM_001199876,NM_001199876,NM_001199877,NM_001199877,NM_001199878,NM_001199878 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001271634,NM_005444,NM_001271634,NM_005444,NM_001271634,NM_005444,NM_001271634,NM_005444,NM_001271634,NM_005444 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 996,900,996,900,996,900,996,900,996,900 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001271634,NM_005444;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 NA chr13 82264391 - intergenic LENG8 chr19 54972770 + 3utr > 28 0 341 131 0.890 0.000 307 0 0.040 0.000 412 426 772 321 GCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTTTTTTTCCTCCCCTGTTGCAAATTCTCATGGTTTGGGTTGGGTGGTGGAGAGCGCGTGTCATCTGCGGGTGGCACTGCCCACGGTGGGCGGGCGGGCCTCTCTACTCGAAGGTGACCACGTTTAGATTCTGAGACGGGAAGTGGAGGGTGAATAGGTCACGGCGGCCTTTTTTTTTTTAGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTCGTCGGTCTTCTGCTTCTTGGTATCGACATCGTCATCCTCATCATCTTCAGCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCAGTGTTTCTTCTGATTTTTTTTTCCCCTTTCCCTCCCTCCCTCTCCGCATTCTTCCCTTGGTTCAGCACAGGTAAAACGGTTTCCCTCCCTCCCTGCCTTCATGGATCACCAGCTCACGTCATGTTGCC CTX 307.00 LQ 0 other NM_052925 2403 geneB_no_inframe_contig_found geneB_transcripts=NM_052925;geneb_utr_codons=13 MV4_11_RNAseq_1 MS4A3 chr11 59838584 + 3utr GNB1 chr1 1717254 - 3utr > 25 1 137 144 0.040 0.000 302 9 0.090 0.000 138 159 3641 562 ACTGTCACTTAAGACCTATATAAACATGGGCAAATTATCCAATCTCTCCTATCTATTTTACCTCATCTGTAAAATAGGTGTAATAATAACAACTACTTTGTCGGTTGCTCTGAGGGTTAAATGAAAATAAAAAGAAAATGTGAAACAGCAAAAAAAAAAAAAAAAAAAAAGTTCTGTTGCAAACGACTGCTGTTGGATTCTGAGGGTGGGGAGGGAGAGAGAGGGAGGGAGAGGGAGTGAAGAGCCTGCCCTCCTATATGGATTCTTCAGGGCCCTCCACATCTGAGGTGGCTCATTCCCAT CTX 302.00 LQ 0 other ,,,,,,,, NM_001031666,NM_001031666,NM_001031666,NM_001031809,NM_001031809,NM_001031809,NM_006138,NM_006138,NM_006138 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001282538,NM_001282539,NM_002074,NM_001282538,NM_001282539,NM_002074,NM_001282538,NM_001282539,NM_002074 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, 723,1023,1023,723,1023,1023,723,1023,1023 ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001282538,NM_001282539,NM_002074;geneb_utr_codons=13 ,,,,,,,, ,,,,,,,, MV4_11_RNAseq_1 NA chr3 94224562 - intergenic EMR3 chr19 14732927 - intron > 11 0 59 133 0.480 0.000 289 0 0.320 0.000 60 77 58 74 GTTTTTTAAAACACAAAAATTATAGAATATGGGATCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGAGCATAAAGAATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAAGACACATGCACACAGGAATGTTCCTATTTTAACATTACCAAGGTAGAAAGTCGGGACAAATTACCCCAGCCG CTX 289.00 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001289158,NM_001289159,NM_032571 ,, ,, ,, 1765,1543,1921 1803,1581,1959 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001289158,NM_001289159,NM_032571 ,, ,, MV4_11_RNAseq_1 TMSB4X chrX 12995300 + 3utr SRGN chr10 70856953 + coding > 25 0 56 84 0.920 0.000 288 0 0.470 0.000 57 67 8392 74283 TAATGCAGTTTAATCAGAGTGCCATTTTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACGAACAAGATCCCCCGTCTGAGGACTGACCTTTTTCCAAAGACGAGAATCCAGGACTTGAATCGTATCTTCCCACTTTCTGAGGACN CTX 288.00 LQ 0 NLoss 0,0 NM_021109, , 3, , , , , NM_002727,NM_002727 65,65 2, tuple,tuple 193,193 477,477 22, , *CSLIRVPFFFLFK*F*LLECTNKIPRLRTDLFPKTRIQDLNRIFPLSED, TMSB4X:NM_021109[1,3]-SRGN:NM_002727[2,3]; geneB_transcripts=NM_002727 , 0, MV4_11_RNAseq_1 TUBA1B chr12 49521565 - 3utr DPP9 chr19 4675389 - 3utr > 7 0 121 79 0.000 0.000 283 0 1.000 0.000 122 125 59 117 AGCTGCAGCTTAACTAACAGATTTTAAATCTTTTTGGTTAGATTTTTTTCATTTGGTGATCATGTTTTTTCCATGTGTACCTGTAATATTTTTCCATCATATCTCAAAGTAAAGTCATTAACATCAAAAAAAAAAGTAAAAAGAAAAGAAAAAAAAAAAAAAAGAAACAAACCACCTCTACATATTATGGAAAGAAAATATTTT CTX 283.00 LQ 0 other NM_139159 2679 geneB_no_inframe_contig_found geneB_transcripts=NM_139159;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr3 40803013 - intergenic GNB2L1 chr5 180664023 - coding > 4 0 282 87 0.870 0.000 275 1 1.000 0.000 283 286 22 11469 GTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTAGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGGCTAAAGACCGTGGTGATTTTATAGCATCCTGGGCATTTCACATCCATGAAGTAGGAATTGGGGCTCTGCACCAGGCGTTTCTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGTTCTCGTGTGCGTAGGTCGTCATCGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTACAAATAAAAAAAAAAACTGGC CTX 275.00 LQ 0 NLoss 0 NM_006098 303 blat 908 954 geneA_no_transcript_IDs_found geneB_transcripts=NM_006098 MV4_11_RNAseq_1 PET100 chr19 7696496 + 3utr CXorf21 chrX 30576940 - intergenic > 5 3 286 92 0.530 0.000 247 12 1.000 0.080 287 300 585 2057 GGAGAAACGAGATGGGGGTGAAGCTGGAGATATTTCGGATGATAATCTACCTCACTTTCCCTGTGGCTATGTTCTGGGTTTCCAATCAGGCCGAGTGGTTTGAGGACGATGTCATACAGCGCAAGAGGGAGCTGTGGCCACCTGAGAAGCTTCAAGAGATAGAGGAATTCAAAGAGAGGTTACGGAAGCGGCGGGAGGAGAAGCTCCTTCGCGACGCCCAGCAGAACTCCTGAGGCCTCCAAGTGGGAGTCCTAGCCCCTCCCCTGATGAAATATACATATACTCAGTTCCTTGTAAAAAAAAAAAAAAAAAAAGTCAAAAGGTTTCAGGGTAAAGAGTTAAGAATATATTTGTTACCCAAATAAATTCATCCAACTTGTTTCTTTTTGAA CTX 252.64 LQ 0 other 0 NM_001171155 NM_025159 906 geneB_no_transcripts MV4_11_RNAseq_1 AP3D1 chr19 2101005 - 3utr SUZ12 chr17 30327652 + 3utr > 0 20 176 134 0.000 0.000 0 251 0.000 0.060 176 184 166 1533 GTCACTTTAGCATGTAATCCATTACAGAATCCCATGCAGTGATTCCAGGATTTGAAATTGTATGATGTGTTACATAAGAATTTATTTGCTATCGACATTCCCGTATAAAGAGAGAGACATATCACGCTGCTGTCATGATTTTGTGTCAAGATGATCCAATAAAGTTGTAAAACAGGAAAAAAAAAAAAAAAAAAAAGATTATTTTAGGGGAGATGTAGGTGTAGAATTATTGCTTATGTCATTTCTTAAGCAGTTATGCTCTTAATTCTTAAAAAAAGGCTAGCATTTTTTGCAAAAAAATTTGGTGATTCCCACCCC CTX 251.00 LQ 2 other , NM_001261826,NM_003938 , , , , , , NM_015355,NM_015355 , , , , 2220,2220 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015355;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LSM6 chr4 147110798 + coding CSF1R chr5 149473874 + intron > 0 8 141 139 0.000 0.830 0 246 0.000 0.510 143 155 555 343 CGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATGGACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGGGTAGAAGAGAAGAAGAAGGAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGCGCGGAAGATCAAGCGCCTCAGAAAGAAGTTTTCGCAAAATATGCTTCGAATGGCAAGGAGGACGATTACCTATGAAAAA CTX 246.00 LQ 2 CLoss NM_007080 233 NM_005211 geneB_no_inframe_contig_found geneB_transcripts=NM_005211;geneB_transcript_strand_disagree=NM_005211;geneb_utr_codons=13 MV4_11_RNAseq_1 ALDH3B2 chr11 67450268 - intergenic ARHGAP4 chrX 153176404 - coding > 9 0 114 76 0.910 0.000 240 1 0.620 0.000 140 151 22 785 TCCCTACACGACGCTCTTCCGATCTCTGGAGTGCCAAGGCTAAAAGACGAAATACCACCGGAACTGGTCGAATGAGGCACCTAAAAATTGTATACCGCAGATTCAGGCATGGATTCCGTGAAGGAACAACACCTAAACCCAAGAGGGCAGCTCAGAGATCCGTGATGCCTTCGAGAGAGGGGAGGACCCACTGGTGGAGGGCTGCACTGCCCACGACCTGGACTCGG CTX 240.00 LQ 0 NLoss 0,0 , , , , , , , NM_001164741,NM_001666 591,551 , blat,blat 1773,1653 2961,2841 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001164741,NM_001666 , , MV4_11_RNAseq_1 APEX1 chr14 20925916 + 3utr HNRNPF chr10 43882862 - coding > 15 0 138 137 0.040 0.000 239 0 0.710 0.000 139 152 670 3136 ATGTATAAAACTAGGAGGCCTCCCAGCTGGCTGCTGTGATAGCGTTCTGTTAAGATCGAGAGTTTTTATTTGAGGGTTTTTGGTTTTTTAGAAAAAAATTGAACAAAGACTACTAATGACTTTGTTTGAATTATCCACATGAAAATAAAGAGCAGTTTGCCTCGCAGGAGTTAGCTGAGAAGGCTCTAGGGAAACACAAGGAGAGGATAGGGCACAGGTACATTGAGGTGTTTAAGAGCAGCCAGGAGGAAGTTAGGTCATACTCAGATCCCCCTCTGAAGTTCATGT CTX 239.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001244249,NM_001641,NM_080648,NM_080649,NM_001244249,NM_001641,NM_080648,NM_080649,NM_001244249,NM_001641,NM_080648,NM_080649,NM_001244249,NM_001641,NM_080648,NM_080649,NM_001244249,NM_001641,NM_080648,NM_080649,NM_001244249,NM_001641,NM_080648,NM_080649,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001098204,NM_001098204,NM_001098204,NM_001098204,NM_001098205,NM_001098205,NM_001098205,NM_001098205,NM_001098206,NM_001098206,NM_001098206,NM_001098206,NM_001098207,NM_001098207,NM_001098207,NM_001098207,NM_001098208,NM_001098208,NM_001098208,NM_001098208,NM_004966,NM_004966,NM_004966,NM_004966,NM_001098204,NM_001098205,NM_001098206,NM_001098207,NM_001098208,NM_004966 157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157,157 4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,3,3,3,3,4,4,4,4,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471,471 1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248,1248 50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,50,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,V*N*EASQLAAVIAFC*DREFLFEGFWFFRKKLNKDY**LCLNYPHENKEQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM,,,,,, APEX1:NM_001244249[1,5]-HNRNPF:NM_001098204[4,4];APEX1:NM_001641[1,5]-HNRNPF:NM_001098204[4,4];APEX1:NM_080648[1,5]-HNRNPF:NM_001098204[4,4];APEX1:NM_080649[1,5]-HNRNPF:NM_001098204[4,4];APEX1:NM_001244249[1,5]-HNRNPF:NM_001098205[4,4];APEX1:NM_001641[1,5]-HNRNPF:NM_001098205[4,4];APEX1:NM_080648[1,5]-HNRNPF:NM_001098205[4,4];APEX1:NM_080649[1,5]-HNRNPF:NM_001098205[4,4];APEX1:NM_001244249[1,5]-HNRNPF:NM_001098206[4,4];APEX1:NM_001641[1,5]-HNRNPF:NM_001098206[4,4];APEX1:NM_080648[1,5]-HNRNPF:NM_001098206[4,4];APEX1:NM_080649[1,5]-HNRNPF:NM_001098206[4,4];APEX1:NM_001244249[1,5]-HNRNPF:NM_001098207[4,4];APEX1:NM_001641[1,5]-HNRNPF:NM_001098207[4,4];APEX1:NM_080648[1,5]-HNRNPF:NM_001098207[4,4];APEX1:NM_080649[1,5]-HNRNPF:NM_001098207[4,4];APEX1:NM_001244249[1,5]-HNRNPF:NM_001098208[3,3];APEX1:NM_001641[1,5]-HNRNPF:NM_001098208[3,3];APEX1:NM_080648[1,5]-HNRNPF:NM_001098208[3,3];APEX1:NM_080649[1,5]-HNRNPF:NM_001098208[3,3];APEX1:NM_001244249[1,5]-HNRNPF:NM_004966[4,4];APEX1:NM_001641[1,5]-HNRNPF:NM_004966[4,4];APEX1:NM_080648[1,5]-HNRNPF:NM_004966[4,4];APEX1:NM_080649[1,5]-HNRNPF:NM_004966[4,4];;;;;; geneB_transcripts=NM_001098204,NM_001098205,NM_001098206,NM_001098207,NM_001098208,NM_004966 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,, MV4_11_RNAseq_1 SNRPB chr20 2442288 - 3utr NA chr4 181054005 + intergenic > 6 6 406 274 0.000 0.000 87 150 0.440 0.060 406 412 17 126 CTGGTATGAGACCTCCTATGGGTCCCCCAATGGGGATCCCCCCTGGAAGAGGGACTCCAATGGGCATGCCCCCTCCGGGAATGCGGCCTCCTCCCCCTGGGATGCGAGGCCTTCTTTGACCCTTGGCCACAGAGTATGGAAGTAGCTCCGCAGAGGCGTGGGCTCGATTCCTCAGGGCCACGTTACCACAGACCTGTTTGTTTCTTATGCTGTTGTTCGTGGAGTCTCATGGGATTGTCTGGTTTCCCTTACAGGGCCCCCTCCCCCGGGAATGCGCCCACCAAGGCCCTAGACTCATCTTGGCCCTCCTCAGCTCCCTGCCTGTTTCCCGTAAGGCTGTACATAGTCCTTTTATCTCCTTGTGGCCTATGAAACTGGTTTATAATAAACTCTTAAGAGAACATTAAAAAAAAAAAAAAAAAACTAAAGAAGACCAAACAGCATGTAATCAATATGGGAGAGATCAGACAAAACTGGCTCCACTACTTTGACCAGAGTTAGCAGCAGATATCTGGAGTAGGAAGTATCCTTTGCTTATGATTTTCCTCAAAGTGAGCTGCAATACAGCGACTCCATTTACTTAACAGTAGTAATCAGATGTTTGAAAGAGACAATAGTCCAGGGTTAAGCGTAGCAAATATGTCTCTTTTGTAAATGAAATATTTAAAACAGAAAACAAAGCACAG CTX 237.00 LQ 0 other , NM_003091,NM_198216 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 EBP chrX 48382102 - 5utr SREK1 chr5 65466697 + coding > 24 0 383 133 0.030 0.000 237 0 0.030 0.000 384 379 321 356 CTGTCTCCCTTGGCATACTCTTTCCAGAGTTGAGATAAGAAGGCTTGGTCTCCAAGCAGGTCTTCGTAGTAGAGAACGAACCAGCCCTCGATCACCAGGTGAATGAACCCACACACTGCAAACCAGCACAGGGACAGTCGCCGCCAAGTCCCCAATGGGACAACCGCAGCACGACCTGACAACAGCCATGTGGTCACGACTAAGACCCCTGTGACAGAGAAGAGGCCAGCCAGTATATGCCAGGTGGGGCGGTCATTAGGTACAAAGTTGTCCAGTCTTAGGTGCTGAGGCCAGTATGGGTGCAAGGGGCCAGCGTTGGTAGTCATGTCTTTGTGGGCTGATGGCTGCGTGTGTATAGGCAGGAAGTTAAAAAAAAAAAAAAAAAAAAGAACAATAAAAAATCCAGAACACCACCCAGGAGTTACAATGCATCGCGAAGATCTCGTAGTTCCAGCAGGGAAAGGCGTAGGAGGAGGAGCAGGAGTTCTTCCAGATCGCCAAGAACATCAAAAAC CTX 237.00 LQ 0 NLoss ,, NM_006579,NM_006579,NM_006579 ,, ,, ,, ,, ,, ,, NM_001077199,NM_001270492,NM_139168 ,, ,, ,, 1406,1058,1058 1875,1524,1527 ,, ,, ,, ;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001077199;geneB_anchor_fail_but_found_blat_hit=NM_001270492;geneB_anchor_fail_but_found_blat_hit=NM_139168 geneB_transcripts=NM_001077199,NM_001270492,NM_139168 ,, ,, MV4_11_RNAseq_1 HTRA4 chr8 38842971 + intron RSL1D1 chr16 11931543 - 3utr > 0 10 81 334 0.710 0.000 1 810 0.010 0.010 85 84 0 2804 CAGGATGGTCTCGATCTCGTTGACCTTGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCCCCTGGACTTAAAAGATTTTTTAAAACCTCCATAAGTAGTCCAGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAACGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTGTACCAAAAATACAAAAATTAATTGGGCATGGTGGTGGACACCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCACTGCACTCCAGCCTGATGACAGAGCAAGACTCAGTCTCAAAAATAAATAAAAATAATAAAACCTCCG CTX 235.90 LQ 0 other NM_153692 1268 NM_015659 1473 geneB_no_inframe_contig_found geneB_transcripts=NM_015659;geneb_utr_codons=13 MV4_11_RNAseq_1 PREB chr2 27356061 - coding TUBA1B chr12 49525159 - 5utr > 0 7 231 121 0.000 0.070 0 230 0.000 0.150 231 258 2341 7484 CATCCTTGCTGCAGGGCAGGATGCCCACTGTCAGCTCCTGCGCTTCCAGGCACATCAACAGCAGGGCAACAAGGCAGAGAAGGCCGGTTCCAAGGAGCAGGGGCCTCGACAAAGGAAGGGAGCAGCCCCAGCAGAGAAGAAATGTGGAGCGGAAACCCAGCACGAGGGGCTAGAACTCAGGGTAGAGAATTTGCAGGCGGTGCAGACAGACTTTAGCTCCGATCCACTGCATACCTCGACACTTAGCTTGTCGGGGACGGTAACCGGGACCCGGTGTCTGCTCCTGTCGCCTTCGCCTCCTAATACCTCGCCACTCTGCGTGAGTGCATCTCCATCCACGTTAGCCCGCCTGGTGTCCCGATTGGCAATGCATGCTGGG CTX 230.00 LQ 0 CLoss 0,0 NM_013388, , 3, , 470, , , NM_006082,NM_006082 -25,-25 1, tuple,tuple , 1356,1356 82, , HPCCRAGCPLSAPALPGTSTAGQQGREGRFQGAGASTKEGSSPSREEMWSGNPARGARTQGREFAGGADRL*LRSTAYLDT*LVGDGNRDPVSAPVAFAS*YLATLRECISIHVSPPGVPIGNACW, PREB:NM_013388[1,3]-TUBA1B:NM_006082[1,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_006082;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 GRB14 chr2 165430025 - intron EIF3E chr8 109214106 - 3utr > 5 11 78 81 0.000 0.000 223 639 1.000 0.000 79 72 9 11706 GGGTGACTTACATTTTGGAAACAACATATTACGTATAAATTTTGAAGAATTGGAATAAAATTGATTCATTTTAAAAAAAAGATGAAAAAAAAAACTATCAAAGAAAGATGAAATAATAAAACTATTATATAAAGGGTGACTTACATTTTGGAAG CTX 223.00 LQ 2 other NM_004490 325 NM_001568 1338 geneB_no_inframe_contig_found geneB_transcripts=NM_001568;geneb_utr_codons=13 MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16345330 + 5utr LRRFIP1 chr2 238673901 + 3utr > 3 0 117 166 0.000 0.000 223 0 1.000 0.000 118 126 314 532 ATTTTCATAAATTGGTTATGTTGGGGGGAAAGTTCTTTAAACTGAAAATTTTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATAAACTAATACTACAATAAAGGATGGTCTTGGGTGAAAAAAAAAAAAAAAAAAAACACACACACAACACAATGTTTTCACGCCTGTAAACCTAGCACATTGGGAAGCCAAGGTGGGAGGATTGCTTGAGGCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTGCACACTGTACTCTAGCCTGGGAGACAGAGTGAGACACTGTGTCTAAAAAAAAAAAAAAAAAAAAAAACACACACAACACAATGTTTTCACGCCTGTAAACCTAGCACATTGGGAAGCC CTX 223.00 LQ 2 other ,,,,,,,,, NM_001113567,NM_001113567,NM_001113567,NM_001113567,NM_001113567,NM_207387,NM_207387,NM_207387,NM_207387,NM_207387 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735,NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 1460,722,,,,1460,722,,, 1923,1185,2427,2259,2355,1923,1185,2427,2259,2355 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 MSI2 chr17 55761495 - intergenic ATP6V0A2 chr12 124244036 + 3utr > 5 0 77 82 0.490 0.000 221 1 0.180 0.000 78 70 49 133 ACAGATTCCACATGGGATGGTACATTATGTACAGAATACAGTAGTAGAGAACCTTCGAGGGAGGCTCTGGAACATTTTGACCTATATTCTTGCAAATTATGTTAATTTTTCATATTTTAGTTTGATTTTAGACAATTATTTTCAAAAAGAA CTX 221.00 LQ 1 other 0 NM_138962 NM_012463 2571 geneB_no_inframe_contig_found geneB_transcripts=NM_012463;geneb_utr_codons=13 MV4_11_RNAseq_1 LYST chr1 235824343 - 3utr HNRNPL chr19 39332767 - intron > 6 0 303 79 0.010 0.000 219 0 0.410 0.000 304 312 24 989 CTTTAAATTAGTCCCCTATTAGAATAGGGTTGCTACTCATCTTTTTTTAAAAACCGAATTTCATCATTTATCTAAAGAGAAAATATGCAGAATAACTGGTCTTGTTAAGAGTGCAATATTATATTTTTATGTAAAAATAAAAATTAATTTGGGGGGATTATTTATTCAGCATGAAACCTAATATGTATATGTTTGAAATACTTCATAATGTGCATGTTGTAGCAAACATTTCTGTAAATTATCACAAGCTCTGTTACCTTTATATACACTGCCTCTTCAATTTGGAAATAAATTTCATAAAAATAAAAAAAAAAAAAAAAAAAAAAAATTTTAACCACAACAAAAAAAAAAATCAAAAAAACCAAAACAGACCTAAAACCAGACAGCCAAA CTX 219.00 LQ 0 other , NM_000081,NM_000081 , , , , , , NM_001005335,NM_001533 , , , 482,881 1371,1770 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001005335,NM_001533 , , MV4_11_RNAseq_1 UBA52 chr19 18686043 + 3utr CAP1 chr1 40537923 + 3utr > 6 0 116 92 0.000 0.000 218 0 0.080 0.000 141 148 4212 2381 CCAACTGCCGACAGTAGAAAGGTTGTCACACCAACTACCTGCGTCCCAAGAACATGGTCAAATTAGGTGGTTCTTTCCTTTTATGGTAGCCTCCTGCCCAGGCCCCGTGGCCCTGGAGCCTCAATAAAGTGTCCCTTTCATTGACTGGGAAAAAAAAAAAAAAACAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAATCCTTCTTCCCTGCCAGGTGCCTGTCACCTGTCTTCAC CTX 218.00 LQ 0 other ,,, NM_001033930,NM_001033930,NM_003333,NM_003333 ,,, ,,, ,,, ,,, ,,, ,,, NM_001105530,NM_006367,NM_001105530,NM_006367 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 DUS3L chr19 5791174 + 5utr PEX2 chr8 77895674 - coding > 0 3 98 51 0.000 0.160 1 216 0.000 0.010 99 103 58 987 CCTCGTTCCAAAGCTCCGGCTCCCGAGTCGCCACCACCACCATTCTCTAGAGGAGCCTCCGCCGTTCCCTCCGCCATCGGCGCCCCTCACACCCGCTCTATGTGGAGAGTGGCCCACCATGCCTCACACCATAGGATGTGAGCATATTTTCTGT CTX 216.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,3,3,3,3 NM_001161619,NM_020175,NM_001161619,NM_020175,NM_001161619,NM_020175,NM_001161619,NM_020175,,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_000318,NM_000318,NM_001079867,NM_001079867,NM_001172086,NM_001172086,NM_001172087,NM_001172087,NM_000318,NM_001079867,NM_001172086,NM_001172087 247,247,247,247,247,247,247,247,247,247,247,247 4,4,3,3,5,5,3,3,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,, ,,,,,,,,,,, 33,33,33,33,33,33,33,33,,,, ,,,,,,,,,,, LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,LVPKLRLPSRHHHHSLEEPPPFPPPSAPLTPALCGEWPTMPHTIGCEHIFC,,,, DUS3L:NM_001161619[1,1]-PEX2:NM_000318[4,4];DUS3L:NM_020175[1,1]-PEX2:NM_000318[4,4];DUS3L:NM_001161619[1,1]-PEX2:NM_001079867[3,3];DUS3L:NM_020175[1,1]-PEX2:NM_001079867[3,3];DUS3L:NM_001161619[1,1]-PEX2:NM_001172086[5,5];DUS3L:NM_020175[1,1]-PEX2:NM_001172086[5,5];DUS3L:NM_001161619[1,1]-PEX2:NM_001172087[3,3];DUS3L:NM_020175[1,1]-PEX2:NM_001172087[3,3];;;; geneB_CDS_mapping_exception=NM_000318:-2;geneB_CDS_mapping_exception=NM_001079867:-2;geneB_CDS_mapping_exception=NM_001172086:-2;geneB_CDS_mapping_exception=NM_001172087:-2 geneB_transcripts=NM_000318,NM_001079867,NM_001172086,NM_001172087 ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, MV4_11_RNAseq_1 NDUFA4 chr7 10973083 - 3utr EBAG9 chr8 110576968 + 3utr > 9 0 362 77 0.500 0.000 214 1 1.000 0.000 363 372 120 688 TTGGAACTGGAGCTACTGGAGCAACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGAACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGATTTCTAAATGAAATGTTTCACTATAACGCTGCTTTAGAATGAAGGTCTTCCAGAAGCCACATCCGCACAATTTTCCACTTAACCAGGAAATATTTCTCCTCTAAATGCATGAAATCATGTTGGAGATCTCTATTGTAATCTCTATTGGAGATTACAATGATTAAATCAATAAATAACTGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAGACTTGAGACAATGTTTTCTTCAACATGCTCCAAATATAAGACATTTGTTTGCTGTACAGAAAG CTX 214.00 LQ 0 other ,, NM_002489,NM_002489,NM_002489 ,, ,, ,, ,, ,, ,, NM_001278938,NM_004215,NM_198120 ,, ,, ,, ,, 642,642,642 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001278938,NM_004215,NM_198120;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 HNRNPAB chr5 177631718 + 5utr BAIAP2L1 chr7 98015185 + intron > 0 4 143 393 0.000 0.900 0 212 0.000 0.010 154 160 1531 2412 TCTTCCGATCTGTGGGTTCCCGTGCGGCGGCGGCCAAGGAGGAGGAGACACAGTTGGAGCAGCTCCGTGGGCTGACTGGGGCGAGGCCTCAGCAGCGCGAGCTTGAGTGCGGCCGAGCCTGCGGCGCCTTCCCCTGCGGGTGGGGACGAGGGGCTTTTCCAGAACTACTGCCTTCACCATGAAGCTCCATGAGCTTTCCCAATTCAAACTTGGGCTTCTTCAGCATTTTTACTTTTCTAACGAAGACATCATGGAGAGGATAAATAGATTGGCAAGCCTTTTCTATGTCTTTTCCAATGCTGTCTGGAATCAATTTATTGACCACTTCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATTTGGCGGACCTGTTGGTGCTGAGCATAAGAGGTCTTCCGTATCTGATTGTTGCGTTTTTTAGTAAAACCAACACAGAACAGACGAAGCAAGTAACCATCGGTAGTCTTGACATCAACGTGAGCTTCAATCATTGTCTGCCATTTTTTGACCATGGAACACATTTTGTC CTX 212.00 LQ 2 other , NM_004499,NM_031266 , , , , , , NM_018842,NM_018842 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_018842;geneB_transcript_strand_disagree=NM_018842 , , MV4_11_RNAseq_1 GOLGA8J chr15 30388893 + 3utr GNL3L chrX 54587504 + 3utr > 4 0 276 97 0.900 0.000 211 1 0.070 0.000 277 274 273 21 CTGCTATCTTAATGTTCTGAAATAATTTAAAACATTTTAAAATATGAATACTGTAGTATAAAAGAAAGAAATGGTGGGAACGAAAAGCAGAGAAAGAAATGCCAATTCCAGTCCAAAGTTTTATTTGCCAAGTTTTCTTAGAATGAATTTTACCAGTTTATGAATTATTGTAAAGAGAATGTGTCGTGGAAATACTGAAAGATTTTTCCCTAGAGTGGCCTTATTGACTGCTGGTGTGATGCCACTGTAATGTAATAAATTATTAAGTTGTTTCAAAAAAAAAAAAAAAAAAAAAATCCCAAGGGGCTGCAGCTGCCAAACCCAATACCCTCTATTTAACCCCTACTCTGTTTTACAAGAGAAATAAAAG CTX 211.00 LQ 0 other , NM_001282472,NM_001282472 , , , , , , NM_001184819,NM_019067 , , , , 1749,1749 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001184819,NM_019067;geneb_utr_codons=13 , , MV4_11_RNAseq_1 GOLGA8R chr15 30692761 - 3utr GNL3L chrX 54587504 + 3utr > 4 0 276 97 0.900 0.000 211 1 0.030 0.000 277 274 519 21 CTGCTATCTTAATGTTCTGAAATAATTTAAAACATTTTAAAATATGAATACTGTAGTATAAAAGAAAGAAATGGTGGGAACGAAAAGCAGAGAAAGAAATGCCAATTCCAGTCCAAAGTTTTATTTGCCAAGTTTTCTTAGAATGAATTTTACCAGTTTATGAATTATTGTAAAGAGAATGTGTCGTGGAAATACTGAAAGATTTTTCCCTAGAGTGGCCTTATTGACTGCTGGTGTGATGCCACTGTAATGTAATAAATTATTAAGTTGTTTCAAAAAAAAAAAAAAAAAAAAAATCCCAAGGGGCTGCAGCTGCCAAACCCAATACCCTCTATTTAACCCCTACTCTGTTTTACAAGAGAAATAAAAG CTX 211.00 LQ 0 other , , , , , , , , NM_001184819,NM_019067 , , , , 1749,1749 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001184819,NM_019067;geneb_utr_codons=13 , , MV4_11_RNAseq_1 GOLGA8K chr15 32681797 - 3utr GNL3L chrX 54587504 + 3utr > 4 0 276 97 0.900 0.000 211 1 0.140 0.000 277 274 95 21 CTGCTATCTTAATGTTCTGAAATAATTTAAAACATTTTAAAATATGAATACTGTAGTATAAAAGAAAGAAATGGTGGGAACGAAAAGCAGAGAAAGAAATGCCAATTCCAGTCCAAAGTTTTATTTGCCAAGTTTTCTTAGAATGAATTTTACCAGTTTATGAATTATTGTAAAGAGAATGTGTCGTGGAAATACTGAAAGATTTTTCCCTAGAGTGGCCTTATTGACTGCTGGTGTGATGCCACTGTAATGTAATAAATTATTAAGTTGTTTCAAAAAAAAAAAAAAAAAAAAAATCCCAAGGGGCTGCAGCTGCCAAACCCAATACCCTCTATTTAACCCCTACTCTGTTTTACAAGAGAAATAAAAG CTX 211.00 LQ 0 other , NM_001282493,NM_001282493 , , , , , , NM_001184819,NM_019067 , , , , 1749,1749 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001184819,NM_019067;geneb_utr_codons=13 , , MV4_11_RNAseq_1 SLC25A17 chr22 41161416 + intergenic TAF5 chr10 105148807 + 3utr > 0 6 93 57 0.000 0.680 1 210 0.010 1.000 94 95 0 61 GGATCATTTTGGTGACTCCAATTAAAGAATAAATGAAGATAAATAAATAAATACATTTCTAATTAAAGAAATAAATGAAGGTTACTTTTTTTTTTTTTTCCAGGTTCATAATTTATTGTACAAATTGAATTATCACATGATGAGTTGGCATT CTX 210.00 LQ 0 other 0,0,0 NM_001282726,NM_001282727,NM_006358 ,, ,, ,, ,, ,, ,, NM_006951,NM_006951,NM_006951 ,, ,, ,, ,, 2403,2403,2403 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_006951;geneb_utr_codons=6 ,, ,, MV4_11_RNAseq_1 FAM172A,MIR2277 chr5 93018871 - intron AKR7A2 chr1 19630582 - 3utr > 3 0 350 81 0.000 0.000 208 1 0.050 0.000 351 367 503 1941 GAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGAAGAGGATGATGATGAAGAGTGCCTTGCTCCCTATTCACTTTACACTGTGAAAGGTGGGGGGTGAGTCCCACTTGAGCGCTTCCTGTTGAATAAAGCAGGCG CTX 208.00 LQ 0 other ,, NM_001163417,NM_001163418,NM_032042 ,, ,, ,, 971,779,1109 ,, ,, NM_003689,NM_003689,NM_003689 ,, ,, ,, ,, 1080,1080,1080 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_003689;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 WDR77 chr1 111983218 - 3utr VASP chr19 46025997 + coding > 0 4 148 126 0.000 0.060 0 204 0.000 0.030 154 162 470 403 CGAACTCTTCCAGTCACAAAAATGCAGCCCAGCTCACTCTGAGGAAGAAGCAGGACTTGGTACGGTTTTACACAACTCCTTACCATTAAACTGAATCAGAAATCCATTTTCTGGCTGAATAAAAAGTTTGGCTTGCCTGTGTAATGCCCATCCCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAAGCGGAGGTGGGGGACTCATGGAAGAGATGAACGCCATGCTGGCCCGGAGAAGGAAAGCCACGCAAGTTGGGGAGAAAACCCCCAAGGATGAATCTG CTX 204.00 LQ 0 NLoss 0,3 NM_024102, , 10, , , , , NM_003370,NM_003370 248,248 7, blat,blat 742,742 1143,1143 51, , NSSSHKNAAQLTLRKKQDLVRFYTTPYH*TESEIHFLAE*KVWLACVMPIPGGPTAPKSESGRSGGGGLMEEMNAMLARRRKATQVGEKTPKDES, WDR77:NM_024102[1,10]-VASP:NM_003370[7,13]; geneB_transcripts=NM_003370 , 2, MV4_11_RNAseq_1 AURKA chr20 54964746 + intron BCL11A chr2 60684830 - 3utr > 0 3 95 55 0.000 0.000 1 203 0.000 0.040 95 96 489 276 TGAACTCTTGATCTACATTTTCTACTTTCTATGCAACATCTGCACCTGATTATCTGAGCGGCATCTCCATTCTAACATGTCCCAAACAGAAGTCCAAAAAAAAGGAAAAAAAAAAAAAAAACCAATGTTTTGCAGTTTTTTTCATTGCCAA CTX 203.00 LQ 2 other ,,,,,,,,,,,,,,,,, NM_003600,NM_003600,NM_003600,NM_198433,NM_198433,NM_198433,NM_198434,NM_198434,NM_198434,NM_198435,NM_198435,NM_198435,NM_198436,NM_198436,NM_198436,NM_198437,NM_198437,NM_198437 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559,NM_018014,NM_022893,NM_138559 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, 2230,,630,2230,,630,2230,,630,2230,,630,2230,,630,2230,,630 2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732,2322,2508,732 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_018014,NM_022893,NM_138559;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 STEAP1B chr7 22549926 - intergenic KRI1 chr19 10664267 - 3utr > 27 0 108 286 0.940 0.000 202 0 1.000 0.000 110 101 153 194 TTTTTAAGTTATTAGTTTTTACAATTATTATTTTTTAATGGAAACAACTTGACCAAAAATTTGTCACAGAATTTTGAGACCCATTAAAAAAGTTAAATGAGAAAAAAAAAAAAAAATTAAAAAACACGTGTAGCTGTGGGTAAGGAAGTCGTCCCATTTTATGGATGTGGAAACTGAGGCTGACTTAAACTTCCCGTGACTTGGAGCTCTCACCTCGAGACACCTCCCAGACCCCACATCCCCTCAGAACGCTGCGCCCAGCCACACCCACGATCAAGTTACACAGCTTTATTGGCCCCCAGCAGCCACAGTTCCCCCAAGGGGGCTTTGGGACAGGGAGGGCCCGGGCGTCCAGTGCAAACTACAGTACGTGAGTCAGGCCCCGAG CTX 202.00 LQ 0 other 0,0 NM_001164460,NM_207342 , , , , , , NM_023008,NM_023008 , , , , 2130,2130 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_023008;geneb_utr_codons=13 , , MV4_11_RNAseq_1 MLF2 chr12 6857567 + 3utr LARP7 chr4 113565848 + coding > 6 2 207 141 0.000 0.610 85 168 0.020 0.010 208 207 1031 324 GAGAGGTGGGCAAAGATCCAGGGTAGCTGAGGGATGGAGGGGGCCCCTAAACCCAGAGCTCACCCCAAAATGCATTGACCCTTCAATGCATGGCAGGAGTAGGATGGGAAAGGTGAGGGGGTTTGAAGATGGAGTGGCAGAATGAAAAATCAAGTCAGTAGATGCAGAGGCGAAGTCATCAATGGTAAACCAGGAGATTAAAGAAGGAAAAGGTAGGGAAAGAAGAAAGCACTGAAAAGAAAAAAGAAGTTGAAAAAAAGAAACGGTCACGAGTTAAACAGGTGCTTGCAGATATTGCTAAGCAAGTGGACTTCTGGTTTGGGGATGCAAATCTTCACAAGGATAGATAGATCGG CTX 201.15 LQ 0 NLoss ,, NM_005439,NM_005439,NM_005439 ,, ,, ,, ,, ,, ,, NM_001267039,NM_015454,NM_016648 ,, ,, ,, 44,23,23 1770,1749,1749 ,, ,, ,, ;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001267039;geneB_anchor_fail_but_found_blat_hit=NM_015454;geneB_anchor_fail_but_found_blat_hit=NM_016648 geneB_transcripts=NM_001267039,NM_015454,NM_016648 ,, ,, MV4_11_RNAseq_1 GAPDH chr12 6647537 + 3utr CCNI chr4 77969178 - intergenic > 3 0 118 378 0.840 0.000 200 0 1.000 0.000 151 157 296 572 GACTGGAGTTCAGACGTGTGCTCTTCCGATCTCTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAGCCGCACCTTGTCATGTACCATCAATAAAGTACCCTGTGCAAACAAAAAAAAAAAAAAAAGAAATCCAAAAGATCCAAACTTTTTTTAAACTTAAAAAATCTCTTTGTAGTATGTCAGTTGCACTTTTTTTCTGCCATAATGTAACGTAGCTTGCCCCGTCAAAAATTCAATTAAAATTCATGGCCAGCAATCCTGTTCCCCCTCAGCATCCTGATTTAATTTTCCTGTTGCTTTTGCTTGCTTCTCCATTTAATAGTTACTGAACTTTATGCATGTTGATCTATATTGATTTTCACTGCAGTTGAATGAACAAATTATTTCAGTGTGACAGCCATGACTCAAGTTCCAATTAGTCTGAAAAGGGTACTTTGGAATTGTCCCATATTAATCAGAGATGGCAAAAGAAAAAGTTCTCATATTACC CTX 200.00 LQ 1 other ,,, NM_001256799,NM_001289745,NM_001289746,NM_002046 ,,, ,,, ,,, ,,, ,,, ,,, NM_006835,NM_006835,NM_006835,NM_006835 ,,, ,,, ,,, ,,, 1134,1134,1134,1134 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_006835;geneb_utr_codons=1 ,,, ,,, MV4_11_RNAseq_1 TUBB4B chr9 140138034 + 3utr TSPAN9 chr12 3321100 - intron > 0 15 152 313 0.000 0.900 0 197 0.000 0.260 156 165 4124 561 ATCTAGATGGAGTTCACCGAGGCCGAGAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGATGCCACAGCCGAGGAGGAGGGCGAGTTCGAGGAGGAGGCTGAGGAGGAGGTGGCCTAGAGCCTTCAGTCACTGGGGAAAGCAGGGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAAC CTX 197.00 LQ 0 other , NM_006088,NM_006088 , , , , , , NM_001168320,NM_006675 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001168320,NM_006675;geneB_transcript_strand_disagree=NM_001168320;geneB_transcript_strand_disagree=NM_006675 , , MV4_11_RNAseq_1 STMN1,MIR3917 chr1 26227061 - 3utr CCDC170 chr6 151940149 + 3utr > 0 3 435 146 0.000 0.100 0 196 0.010 1.000 435 450 1639 6 AACTGACTTTCTCCCCATCCCCTTCCTAAATATCCAAAGACTGTACTGGCCAGTGTCATTTTATTTTTTCCCTCCTGACAAATATTTTAGAAGCTAATGTAGGACTGTATAGGTAGATCCAGATCCAGACTGTAAGATGTTGTTTTAGGGGCTAAAGGGGAGAAACTGAAAGTGTTTTACTCTTTTTCTAAAGTGTTGGTCTTTCTAATGTAGCTATTTTTCTTGTTGCATCTTTTCTACTTCAGTACACTTGGTGTACTGGGTTAATGGCTAGTACTGTATTGGCTCTGTGAAAACATATTTGTGAAAAGAGTATGTAGTGGCTTCTTTTGAACTGTTAGATGCTGAATATCTGTTCACTTTTCAATCCCAATTCTGTCCCAATCTTACCAGATGCTACTGGACTTGAATGGTTAATAAAACTGCACAGTGCTGAAACTACATCTCAGAAAAAAAAAAAAAAAAAGTTAATGTCCAAAAATGACAGATTTACAAGTGTAAGCTATATGATTTCTTCAAAAAGCAAAAGCAATATACCTAATTCATTTGGATCAAACTTACATAGGTCTCAGGTCCTGTAAGAAACTTGCCTGTTC CTX 196.00 LQ 0 other ,,, NM_001145454,NM_005563,NM_203399,NM_203401 ,,, ,,, ,,, 378,,, ,,, ,,, NM_025059,NM_025059,NM_025059,NM_025059 ,,, ,,, ,,, ,,, 2148,2148,2148,2148 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_025059;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 COX5B chr2 98264646 + 3utr SENP3,SENP3-EIF4A1,EIF4A1 chr17 7482002 + 5utr > 8 0 71 86 0.550 0.000 194 0 0.460 0.000 72 66 2856 3355 GCACCTGCACTAAATTACTCAAAATGTGCTGTAAAGTTTCTTCTTTCCAGTAAAGACTAGCCATTGCGCCGGCTCTTCTCCCAAAAAAAAAAAAAAACACTAATCCATTTCCCTAACCTAGTAACCTCCAGATCCCAGAGGCTCTCCTCAC CTX 194.00 LQ 2 other , NM_001862,NM_001862 , , , , , , NM_001204510,NM_001416 , , , , 1044,1221 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001204510,NM_001416;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TFRC chr3 195776327 - 3utr CASP1 chr11 104905145 - coding > 0 4 92 143 0.000 0.500 1 194 0.000 0.080 92 90 2688 293 AGACTAGTGACAAGCTCCTGGTCTTGAGATGTCTTCTCGTTAAGGAGATGGGCCTTTTGGAGGTAAAGGATAAAATGAATGAGTTCTGTCATAAATGGCTTACTGGATGAATTATTACAGACAAGGGTGCTGAACAAGGAAGAGATGGAGAAAGTAAAACGTGAAAATGCTACAGTTATGGATAAGACCCGAGCTTTGATTGACTCCGTTATTCCGAAAGGGGCACAGGCATG CTX 194.00 LQ 1 NLoss 0,0,0,0,0,0,0,0,3,3,3,3 NM_001128148,NM_003234,NM_001128148,NM_003234,NM_001128148,NM_003234,NM_001128148,NM_003234,,,, ,,,,,,,,,,, 19,19,19,19,19,19,19,19,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001223,NM_001223,NM_001257118,NM_001257118,NM_001257119,NM_001257119,NM_033292,NM_033292,NM_001223,NM_001257118,NM_001257119,NM_033292 22,22,22,22,22,22,22,22,22,22,22,22 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 64,64,64,64,64,64,64,64,64,64,64,64 1152,1152,1215,1215,1152,1152,1215,1215,1152,1215,1152,1215 30,30,30,30,30,30,30,30,,,, ,,,,,,,,,,, RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,RLVTSSWS*DVFSLRRWAFWR*RIK*MSSVINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQA,,,, TFRC:NM_001128148[1,19]-CASP1:NM_001223[2,9];TFRC:NM_003234[1,19]-CASP1:NM_001223[2,9];TFRC:NM_001128148[1,19]-CASP1:NM_001257118[2,9];TFRC:NM_003234[1,19]-CASP1:NM_001257118[2,9];TFRC:NM_001128148[1,19]-CASP1:NM_001257119[2,8];TFRC:NM_003234[1,19]-CASP1:NM_001257119[2,8];TFRC:NM_001128148[1,19]-CASP1:NM_033292[2,10];TFRC:NM_003234[1,19]-CASP1:NM_033292[2,10];;;; geneB_breakpoint_not_mapped_to_CDS=NM_033293;geneB_breakpoint_not_mapped_to_CDS=NM_033294;geneB_breakpoint_not_mapped_to_CDS=NM_033295 geneB_transcripts=NM_001223,NM_001257118,NM_001257119,NM_033292,NM_033293,NM_033294,NM_033295;geneB_intronic=NM_033293;geneB_intronic=NM_033294;geneB_intronic=NM_033295 ,,,,,,,,,,, 0,0,0,0,0,0,0,0,,,, MV4_11_RNAseq_1 NA chr9 46025936 + intergenic HSD17B12 chr11 43877440 + 3utr > 3 35 99 444 0.990 0.000 174 1651 0.370 0.820 100 100 47 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 190.51 LQ 0 other NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr CSTF3 chr11 33117081 + intron > 13 4 405 233 0.000 0.990 504 185 1.000 0.030 405 402 73 423 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGC CTX 190.04 LQ 2 other NM_024945 NM_001326 geneB_no_inframe_contig_found geneB_transcripts=NM_001326;geneB_transcript_strand_disagree=NM_001326 MV4_11_RNAseq_1 SMARCD2 chr17 61909578 - 3utr NA chr10 122114189 + intergenic > 0 17 225 131 0.000 0.910 0 190 0.010 0.010 225 237 766 2787 GTTTTCTATGTGGGAGCCACTTTTTTTGTACAGGGGTAAGTTGGGGGTTTTCAGGGAGCCTGTTAGGTGCCTCCTTCTTTTCTTTCCTCAATCTATGCAAGCGGCTCTGGCCGCCATCATCTCCTGGGATGCCAGAGGGCTGCCTCTCCAGCGGCTTGGGCCGGGGAGGGGACACTCCAGTTCTCTAGCATGGCCTGAGGTATGGGGTATGTGCATGTGGAGGCCTTATTTTTTTTTTTAACACCTATTATGCCATGAATTCATAGGGAATAGGGTCCAGAAGCTCCGGATCCTTCCCATTGGTTCTGCCAACGTGTGTTTCTCTGGGAGGAGCAGGCGGGCGATTTAGTTGAACCCAGGTCCCTTTCG CTX 190.00 LQ 0 other NM_001098426 geneB_no_transcripts MV4_11_RNAseq_1 INHBA-AS1 chr7 41773788 + intron NA chr7 41911606 + intergenic > 20 20 293 151 0.000 0.000 875 1011 0.220 0.240 293 293 208 84 GACTCATTCTTACCGACTCTGATTTCTAAGCTGTGAAGCACTGCTGAAGGAAGTCATTTTGCTTTGCTCACTGGGAAATGACAAATTCTATGGCCTTCAGAAACGGCTCCCAACAAACGTAACCAGAGAGGTCTCAGTACCATCAGGTTCCCAGGATTATCTGCTGCGTTGCTCAGCCATCCTTAGCTGATGCTCCAGAGCCCAGGACAGCTACTTATGCTCCAATTCATTGCTGTGGCAGCAGGAAAAAGAAAACTACAAGGAAAGGGATATCTCTTCTCTTGAAGGACAGCTCACAGTGAAGGACCCTGAGAGGGCAGAGCCATGTGATGGAATGAGCCATGATCCCTGAGTCCTCACCTCAGGGAGAGATGTGCAGAAGAGCCACCCAAGTGGTGATGTGCTGGTAAACATTTAGTGACCCATTTGAGGTGTGGGCGGAG DEL 188.60 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 IL6ST chr5 55240541 - intron POLE3 chr9 116170168 - 3utr > 18 1 267 143 0.930 0.000 187 6 0.140 0.000 268 277 4207 1145 GCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTGTGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCGTCTGGCATTCCATGTTTCTGCTCCTGTGGCCTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTCTCTCTCCTGCCTCTCCTCTGCTCCCCATCCCACTTTCTCATCTGCCTCCTTTTCTCACTTCTGTCAGTCTGTAAGCTTTGATAACCTGCTTAATACTCCAAAGTGTGAGTTCCTCTGATCTCTTGATTCCTTAGTTCTAAT CTX 187.00 LQ 0 other ,,,,, NM_001190981,NM_001190981,NM_002184,NM_002184,NM_175767,NM_175767 ,,,,, ,,,,, ,,,,, 1755,1755,1938,1938,, ,,,,, ,,,,, NM_001278255,NM_017443,NM_001278255,NM_017443,NM_001278255,NM_017443 ,,,,, ,,,,, ,,,,, ,,,,, 444,444,444,444,444,444 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001278255,NM_017443;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 GOLGA6L10 chr15 82664400 - intron MS4A6A chr11 59941215 - intron > 8 0 391 93 0.670 0.000 186 0 1.000 0.000 392 378 52 6274 CAACGTTGTTATCCAGGAGAATGGGTCTCTTGTTGAAATCCGAAATTTCTTGGGTGAAAAATACATCCGCAGGGTTCGGATGAGACCAGGTGTTGCTTGTTCAGTATCTCAAGCCCAGAAAGATGAATTAATCCTTGAAGGAAATGACATTGAGCTTGTTTCAAATTCAGCGGCTTTGATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGTTCAGCAGGCTGATGAATAAGATCTAAGAGTTACCTGGCTACAGAAAGAAGATGCCAGATGACACTTAAGACCTACTTGTGATATTTAAATGATGCAATAAAAGACCTATTGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAACAACAAAGAAACAACAACAAAAATCAAGAAGAAATACAAAGGGGTTCAGATACATAGACAGGGATGTCAAT CTX 186.00 LQ 0 other ,,, NM_001164465,NM_001164465,NM_001164465,NM_001164465 ,,, ,,, ,,, ,,, ,,, ,,, NM_001247999,NM_022349,NM_152851,NM_152852 ,,, ,,, ,,, 634,550,446,550 762,678,537,747 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001247999,NM_022349,NM_152851,NM_152852 ,,, ,,, MV4_11_RNAseq_1 ACAD9 chr3 128631940 + 3utr CXorf21 chrX 30576940 - intergenic > 1 6 93 78 0.000 0.000 14 172 0.140 0.080 96 100 29 2057 AGCTTAAAAGCTCTGTCGGGGTCATTAATTTAAACTAGAAGCAGAGGCACTTAAAACATGTACCAGGAACCATTTAACAAAGAATATAAAATGTCAAAAAAAAAAAAAAAAAAAAGTCAAAAGGTTTCAGGGTAAAGAGTTAAGAATATATTTGTTACCCAAATAAATTCATCCAACT CTX 186.00 LQ 0 other 0 NM_014049 NM_025159 906 geneB_no_transcripts MV4_11_RNAseq_1 DNAJC15 chr13 43681508 + 3utr FOXN2 chr2 48574782 + intron > 0 4 146 60 0.000 0.000 0 184 0.000 0.420 147 147 514 22 GAAACAACCACCAAACATTGATGCTTAAGGACCACACTGAAGGAAAAAAAAAGAGGGGACTTCGAAAAAAAAAAAAAGCCCTGCAAAATATTCTAAAACATGGTCTTCTTAATTTTCTATATGGATTGACCACAGTCTTATCTTCCAAATTTATCATTGGTCCACCTTCAAATAATATTATACCATTTCACGTAACTGGCTCTTTAC CTX 184.00 LQ 0 other NM_013238 NM_002158 537 1296 geneB_no_inframe_contig_found geneB_transcripts=NM_002158 MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr TSC2 chr16 2115520 + intron > 17 3 36 200 0.990 0.000 183 70 0.080 0.250 36 36 21481 36 CTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCGACAGAGCAAGACTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGTTTGTGGTAGAAAGTGTTCTCACGGCTGCTGACTCAGAACCATGAGCCTGTGTGTAAGTCCTGGCCTTCTCTTCAAAGGTGATGGCCCGCTCCCTCTCCCCACCCCCGGAGCTGGAAGAAAGGGATGTGGCCGCATACCCGG CTX 183.00 LQ 1 other 0,0,0,3,3,3 NM_000239,NM_000239,NM_000239,,, ,,,,, 4,4,4,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_000548,NM_001077183,NM_001114382,NM_000548,NM_001077183,NM_001114382 534,534,534,534,534,534 16,16,16,,, tuple,tuple,tuple,tuple,tuple,tuple 1600,1600,1600,1600,1600,1600 5424,5223,5355,5424,5223,5355 57,57,57,,, ,,,,, SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,SSTFRSFFF*DSLGDRARLDLKKKKKKKKKVFVVESVLTAADSEP*ACV*VLAFSSKVMARSLSPPPELEERDVAAYP,,, LYZ:NM_000239[1,4]-TSC2:NM_000548[16,42];LYZ:NM_000239[1,4]-TSC2:NM_001077183[16,40];LYZ:NM_000239[1,4]-TSC2:NM_001114382[16,41];;; geneB_transcripts=NM_000548,NM_001077183,NM_001114382 ,,,,, 1,1,1,,, MV4_11_RNAseq_1 USP47 chr11 11969547 + coding LSM7 chr19 2328405 - coding > 3 0 158 86 0.000 0.000 182 0 0.090 0.000 159 165 152 7408 GTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTACGTGATGTTCCAGGGAGGCCGCGAAGGTGAGGAGGCTCCCGCTGTCGGTACCCCCTCTTTAAAAATTTCAAATAAACCCAGCAACAGAGATG CTX 182.00 LQ 0 Fusion , NM_001282659,NM_017944 , , , 3147,2943 , , NM_016199,NM_016199 , , , 78,78 312,312 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_016199 , , MV4_11_RNAseq_1 CWF19L1 chr10 102020743 - coding MICU2 chr13 22202806 - intergenic > 0 14 143 146 0.000 0.880 0 181 0.000 0.160 147 158 182 177 GATCTGGAGATGTTGAAGGAAAGTTTGATATTTTATTCAATAGAGTTCAAGCAATTCAGAAGAAAAGTGGAAACTTTGATCTGCTGTTGTGTGTAGGAAATTTCTTTGGCTCCACCCAAGATGCTGAATGGGAGGAGTATAAGACTGAAAAGCGTCCCAGGAGCCGTACTCTGACAGCTGTGCACGATGCCATCCTTGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGATGGCAGCCGGCTCATAAAGGTTCATTTGGACAAAGCACAGCAGAACAATGTAGAT CTX 181.00 LQ 0 CLoss 0 NM_018294 167 NM_152726 geneB_no_transcripts MV4_11_RNAseq_1 WIPF1 chr2 175435898 - intron CAP1 chr1 40537916 + 3utr > 0 8 81 69 0.000 0.000 1 180 0.000 0.010 81 82 52 2350 GAACTTCTCCTGTACTTCTCTCTTCATTCGCCAGGCTTTGAGGCCATTTCCCTATTCATTAAAGACTAATGTTTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAATCCTTCTT CTX 180.00 LQ 0 other ,,, NM_001077269,NM_001077269,NM_003387,NM_003387 ,,, ,,, ,,, 1129,1129,1129,1129 ,,, ,,, NM_001105530,NM_006367,NM_001105530,NM_006367 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 CCT7 chr2 73480133 + 5utr RAB27A chr15 55495633 - 3utr > 5 0 143 284 0.000 0.000 179 0 1.000 0.000 144 143 37 292 AGGCACCCCACCCATCACATGGCTGGCTGGCTGCTGGGTGCACTTACCCTCCTTGGCTTGGTTACTTCATTTTACAAGGAAGGGGTAGTAATTGGCCCACTCTCTTCTTACTGGAGGCTATTTAAATAAAATGTAAGACTTCAAAAAAAAAAAAAAAAAAAAGAGCAGGGTCATAATCACACAGCAGTGCCTTATATAGTTGCCATAAGACTTCAGTGCAGTACAACATAATTTTACAGCTACATATCAGGGCATATTCTATATGGTGTATTTGTGTTAGAATAACACATTAAATGTCTTTAAACATAAAAATAAGAATGTTTGCATGTTTCAGTTTTCAAGAACCAAATGAGTAATTAGCTATAGATTCCACTGGCCTTAAACATACAATTAAGTGTATACATGATATAGTGCACACACAAAAGC CTX 179.00 LQ 0 other ,,,,,,,,,,,,,,, NM_001009570,NM_001009570,NM_001009570,NM_001009570,NM_001166284,NM_001166284,NM_001166284,NM_001166284,NM_001166285,NM_001166285,NM_001166285,NM_001166285,NM_006429,NM_006429,NM_006429,NM_006429 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_004580,NM_183234,NM_183235,NM_183236,NM_004580,NM_183234,NM_183235,NM_183236,NM_004580,NM_183234,NM_183235,NM_183236,NM_004580,NM_183234,NM_183235,NM_183236 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, 666,666,666,666,666,666,666,666,666,666,666,666,666,666,666,666 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004580,NM_183234,NM_183235,NM_183236;geneb_utr_codons=13 ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, MV4_11_RNAseq_1 SHQ1 chr3 72798786 - 3utr MARCH2 chr19 8480590 + intron > 3 0 181 90 0.000 0.000 176 1 0.030 0.000 182 178 302 36 TTTTGTTTTCCTTGCCGCGACTGTGAAGATAAAGTTCAAAAGTATTTTTACCAAAGTGTAGCTAATATTTCAAGCTGAAAATAATAGTTCTACTGCCCGTGTCTCCAGAATGTAGAGCCCATCAATATTTTTATTTTAGGAGGTGTACTTGACACCCAATAAACTGCACGTATCAAAAGTGAAACTCCATCTCAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAACCAGACAAAAGAAAGAAGAGAAATAAATCTCCTGGGCACTGGG CTX 176.00 LQ 0 other ,, NM_018130,NM_018130,NM_018130 ,, ,, ,, ,, ,, ,, NM_001005415,NM_001005416,NM_016496 ,, ,, ,, ,, 741,531,741 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001005415,NM_001005416,NM_016496;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 COX7C chr5 85913807 - 5utr ZNF263 chr16 3340270 + coding > 4 0 63 98 0.670 0.000 176 1 0.060 0.000 64 53 5653 246 GCTGCTGGAAGCTCTGCGAAAGGCGCAGAGAATGAGGACAGATGAAATGGCGGCACCTCACCAAGACATCAGAGAACACACACAGGAGAGAAACCGTATAAATGTACCCTTTGTGGGGAAAACTTCTCTCATAGATCCAATTTAATCAGGC CTX 176.00 LQ 0 NLoss 0,0 NM_001867, , 1, , , , , NM_005741,NM_005741 588,588 6, blat,blat 1764,1764 2052,2052 21, , AAGSSAKGAENEDR*NGGTSPRHQRTHTGEKPYKCTLCGENFSHRSNLIR, COX7C:NM_001867[1,1]-ZNF263:NM_005741[6,6]; geneB_transcripts=NM_005741 , 0, MV4_11_RNAseq_1 CCL5 chr17 34198941 + 3utr YWHAE chr17 1248601 - 3utr ? 1 22 173 121 0.020 0.490 7 350 0.010 0.120 174 174 89 3932 ACGGAGTCTCACTTTGTCACCCAGGCTGGAGTGAAGTGGCACAATCTCAGCTCACTGCAGCCTCCACCTCCTGGGTTCAAACAATTTTCCTGCCTTAGCCTCCCGAGTAGCTGGGATTACAGGCGTGGGCCACCACGCCCGGCTAATTTTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAGTTTTCAAAAGTTCTTAAAAGAAAGGGTGAATTTATGTGGATTTTAATGGTCCCAGCTTTTAGGTTTTTTAAAACACTAAAATGACTTCATAGAGGCTTTTTTAGCATTTTTTGTTTGTTTCCT ITX 173.28 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr ZNF564 chr19 12635896 - intergenic > 22 2 125 64 0.000 0.480 489 170 0.080 1.000 125 127 21481 10 ATTTTATATTAAGCCTACAACATTTTTCAGTTTGCAAATAGAACTAATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAAAGATTGAAAGCAAAGT CTX 171.04 LQ 1 other 0 NM_000239 NM_144976 1662 geneB_no_transcripts MV4_11_RNAseq_1 KHDRBS1 chr1 32509478 + 5utr USP45 chr6 99902964 + intron > 2 2 228 82 0.000 0.000 33 138 0.200 0.070 228 233 20 22 GTCTCAACACTAGCATGATATAAAAAGGGACACTGCAGCTGAATGAAAAAGGAATCAAAATCCACTTTGTACATAAGTTAAAGTCCTAATTGGATTTGTACCGTCCTCCCATTTTGTTCTCGGAAGATTAAATGCTACATGTGTAAGTCTGCCTAAATAGGTAGCTTAAACTTATGTCAAAATGTCTGCAGCAGTTTGTCAATAAAGTTTAGTCCTTTTTTAATCAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAACACAACAGTATGGAGATTTCTCAAAACTAAAATAAGGCTGGGTGCGATGGCTCA CTX 171.00 LQ 0 other , NM_001271878,NM_006559 , , , , , , NM_001080481,NM_001080481 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001080481;geneB_transcript_strand_disagree=NM_001080481 , , MV4_11_RNAseq_1 CRIP1 chr14 105955118 + 3utr AP1S3 chr2 224620265 - 3utr > 3 0 404 188 0.000 0.000 171 0 0.180 0.000 405 412 122 48 GCCCGTGCCGCCCCAGCCGCTGCCGCCTGCACCGGACCCGGAGCCGCCATGCCCAAGTGTCCCAAGTGCAAAAAGGAGGTGTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTGGCATCGGCCCTGCCTGAAGTGCGAGAAATGTGGGAAGACGCTGACCTCTGGGGGCCACGCTGAGCACGAAGGCAAACCCTACTGCAACCACCCCTGCTACGCAGCCATGTTTGGGCCTAAAGGCTTTGGGCGGGGCGGAGCCGAGAGCCACACTTTCAAGTAAACCAGGTGGTGGAGACCCCATCCTTGGCTGCTTGCAGGGCCACTGTCCAGGCAAATGCCAGGCCTTGTCCCCAGATGCCCAGGGCTCCCTTGTTGCCCCTAATGCTCTCAGTAAACCTGAACACCAAAAAAAAAAAAAAAAAAAAAAATGAAAGTAAGTAAACATATCTATATGGCACAGTGGGGTAAATTTGAGGGATTTTAGGGACATCTTACATGGGCCTAGGCTAAAATAGTCATTGTGTTTTCTTTATATTATATAATTACTATAAAACTACCAAGAGAAAGACAGTAAATGTTAAATTTCTATAAAACTTCC CTX 171.00 LQ 0 other NM_001311 NM_001039569 465 geneB_no_inframe_contig_found geneB_transcripts=NM_001039569;geneb_utr_codons=13 MV4_11_RNAseq_1 PPM1H chr12 63359818 + intergenic C8orf76,ZHX1-C8orf76,ZHX1 chr8 124262099 - 3utr > 1 5 89 74 0.000 0.000 8 166 1.000 0.050 89 77 4 483 CTCCAAAGGCATCTGGCAAGAAAGCATAAGTGGCAATCATAAAAAGTAATAAAGGTTCTTTTTGACCTGTTGGTAAAAAAAAAAAAAAAAAAAAAAAACCCTAATTTATTACTATGTCTTATTTATCAGACCCTGCACTAAGATTAAAAGT CTX 170.85 LQ 1 other 0,0,0 NM_020700,NM_020700,NM_020700 ,, ,, ,, ,, ,, ,, NM_001017926,NM_001204180,NM_007222 ,, ,, ,, ,22, 2622,879,2622 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001017926,NM_001204180,NM_007222;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 TMEM123 chr11 102267063 - 3utr CHST11 chr12 104998931 + intron > 5 0 258 114 0.000 0.000 168 0 1.000 0.030 259 258 11 141 ATTTATCTGAAGATCAAAACAAACAATCCAGATGTATAAGTACTAGGCAGAAGCCAATTTTAAAATTTCCTTGAATAATCCATGAAAGGAATAATTCAAATACAGATAAACAGAGTTGGCAGTATATTATAGTGATAATTTTGTATTTTCACAAAAAAAAAGTTAAACTCTTCTTTTCTTTTTATTATAATGACCAGCTTTTGGTATTTCATTGTTACCAAGTTCTATTTTTAGAATAAAATTGTTCTCCTTCTAAAAAAAAAAAAAAAAAAAAAAAAATCAAACCCAGATTTTCACTGGACAAAGGGTTGGGAAAATTGGGAAATTTTGGCTATAATCTGGGAAAACTGGCTATAATATGGGGAAATTGG CTX 168.00 LQ 1 other , NM_052932,NM_052932 , , , , , , NM_001173982,NM_018413 , , , 189,204 1044,1059 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001173982,NM_018413 , , MV4_11_RNAseq_1 CCNB2 chr15 59417246 + 3utr SAV1 chr14 51125831 - intron > 0 3 93 67 0.000 0.000 1 168 0.000 0.040 93 84 4 113 GTCCTCTGGTCTATCTCATGAAACCTCTTCTCAGACCAGTTTTCTAAACATATATTGAGGAAAAATAAAGCGATTGGTTTTTCTTAAGGTATCTCTCCCAACCAAAAAAAAAAAAAAAAAAAAATTCTTTACAGCAGTTGATACACTGCTT CTX 168.00 LQ 0 other NM_021818 535 1152 geneB_no_inframe_contig_found geneB_transcripts=NM_021818 MV4_11_RNAseq_1 LINC00167 chr11 129902686 - intergenic RTN4 chr2 55199947 - 3utr > 0 4 84 367 0.000 0.050 1 166 0.010 0.020 89 76 0 1089 AATGAACAAGCCGTGCAGTGAGGACCCCCAAGAGGCCCATTTCCCCCAATAAAAGAGATTTGGGAGTCTAGAAAAAAAAAAAAAAAAAGCCCTTTTCAGTTTGTGCACTGTGTATGGTCCGTGTAGATTGATGCAGATTTTCTGAAATGAAATGTTTGTTTAGACGAGATCATACCGGTAAAGCAGGAATGACAAAGCTTGCTTTTCTGGTATGTTCTAGGTGTATTGTGACTTTTACTGTTATATTAATTGCCAATATAAGTAAATATAGATTATATATGTATAGTGTTTCACAAAGCTTAGACCTTTACCTTCCAGCCACCCCACAGTGCTTGATATTTCAGAGTCAGTCATTGGTTATACATGTGTAGTTCCAAAGCACATAAGCTAGAAGAAGAAATATTTCTAGGAGCACTACCATCTGTTTTCAACATGAAATGCCA CTX 166.95 LQ 0 other ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_007008,NM_020532,NM_153828,NM_207520,NM_207521 ,,,, ,,,, ,,,, ,,,, 600,3579,1122,1179,2961 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_007008,NM_020532,NM_153828,NM_207520,NM_207521;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 PSMB2 chr1 36068739 - 3utr DDX21 chr10 70743455 + 3utr > 1 2 127 68 0.000 0.000 21 166 0.010 0.070 127 127 162 1052 TCATGTCCTCCCTCCCACTTGCCAGGGAACTTTTTTTTGATGGGCTCCTTTATTTTTTTCTACTCTTTTCAGGCGCACTCTTGATAAATGGTTAATTCAGAATAAAGGTGACTATGGATATAATTGAAAAAAAAAAAAAAAAAAAAAAGAACCAAACCACTGGAAATAATCAAATGCAAAAAGGTAACAAATTCA CTX 166.63 LQ 0 other ,,,,, NM_001199779,NM_001199779,NM_001199780,NM_001199780,NM_002794,NM_002794 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001256910,NM_004728,NM_001256910,NM_004728,NM_001256910,NM_004728 ,,,,, ,,,,, ,,,,, ,,,,, 2148,2352,2148,2352,2148,2352 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001256910,NM_004728;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 DGKI chr7 137198662 - intron POLE3 chr9 116170168 - 3utr > 16 1 193 143 0.940 0.000 166 6 0.020 0.000 195 203 26739 1145 CGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCGTCTGGCATTCCATGTTTCTGCTCCTGTGGCCTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTCTCTCTCCTGCCTCTCCTCTGCTCCCCATCCCACTTTCTCATCTGCCTCCTTTTCTCACTTCTGTCAGTCTGTAAGCTTTGATAACCTGCTTAATACTCCAAAGTGTGAGTTCCTCTGATCTCTTGATTCCTTAGTTCTAAT CTX 166.00 LQ 0 other , NM_004717,NM_004717 , , , 2248,2248 , , NM_001278255,NM_017443 , , , , 444,444 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001278255,NM_017443;geneb_utr_codons=13 , , MV4_11_RNAseq_1 POLR2E chr19 1088433 + 3utr RSF1 chr11 77413540 - coding > 0 4 215 138 0.000 0.000 0 164 0.000 0.110 216 211 2263 70 CAACCTCCTACAACAACCGAGAACTCCAGAGCTGGCATCTCGCACCCTGGTGGCTTGAGCGCGTGCACGGCTGTGAATGGAGTAAAGAGCCGAGGCCGGGCGGGGGCCGCCACGCATCAGGGCCCCCGAGGGAGGGAAGACGAGGGGTGGAAGGCCGAGGGCCCAGGAGGAAGCAGTGGCTGGTGGGAGACCCGGACCCCAAACCCCCAACAGAGGAACAGAAAGAAAGTGAAAAGATGAAAAGTGAGGAGCAGCCTATGGATTTAGAAAACCGTTCTACAGCCAATGTTCTAGAAGAGACTACTGTGAAAAAAGAAAAAGAAGATGAAAAGGAACTTGTGAAACTGCC CTX 164.00 LQ 0 NLoss 0,3 NM_002695, , 8, , , , , NM_016578,NM_016578 245,245 6, tuple,tuple 734,734 4326,4326 70, , TSYNNRELQSWHLAPWWLERVHGCEWSKEPRPGGGRHASGPPREGRRGVEGRGPRRKQWLVGDPDPKPPTEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKL, POLR2E:NM_002695[1,8]-RSF1:NM_016578[6,16]; geneB_transcripts=NM_016578 , 2, MV4_11_RNAseq_1 HSD17B12 chr11 43877448 + 3utr LGR6 chr1 202222926 + intron > 18 3 353 114 0.000 0.990 835 152 0.700 1.000 353 355 162 6 CAGAATGATAGACTCAAGCATAAAACTTGGCAGTTTTATCTGCTTCAAAATGCCATTGATCATTATTCCTGTATTTTCTCTGAAACTGATTATAAAAACCAATGTCCAGCTACTCTTTTGACACTTGAAGAAATGGAGATCGATTTGATTTGTTTATAAGCAGACACACTGCAATTTACAAAGATCTCTTTACGGTTTTATAAAATTATCTTCCAGTTTGTACATTTATATGGAATTGTTCTTTATCAAGGGTAGCTAATGACATGAAAATAATTGTGAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTC CTX 160.35 LQ 0 other ,, NM_016142,NM_016142,NM_016142 ,, ,, ,, ,, ,, ,, NM_001017403,NM_001017404,NM_021636 ,, ,, ,, 428,299,272 2904,2487,2748 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001017403,NM_001017404,NM_021636 ,, ,, MV4_11_RNAseq_1 CENPK chr5 64814197 + 3utr RFC1 chr4 39313139 - coding > 0 4 142 143 0.000 0.000 0 160 0.000 0.020 151 141 679 336 TTCCGATCTTTTTATGCCTAGAATATTATCTACCTGCATTCTTATCCATATAGTTTAAAACACTAAAGCACTCACTGAATAAGAAATGACCATTTAAAAATGAATAATAGATGGCAGCACATGCCATTTTGCAATAAAAGTAAGATGGCCTGTTGAATCTGATTCGGACTATGCCAGGCAAGAAATCCAAGTATGAAATAGCAGTTGAAACTGAGATGAAGAAAGAGTCCAAACTGGAGAGAACACCCCAAAAAAATGTCCAAGGAAAAAGAAAAATTAGTCCA CTX 160.00 LQ 1 NLoss 0,0,0,0,3,3 NM_001267038,NM_022145,NM_001267038,NM_022145,, ,,,,, 11,11,11,11,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001204747,NM_001204747,NM_002913,NM_002913,NM_001204747,NM_002913 472,472,472,472,472,472 12,12,12,12,, blat,blat,blat,blat,blat,blat 1414,1414,1414,1414,1414,1414 3447,3447,3444,3444,3447,3444 46,46,46,46,, ,,,,, PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,PIFLCLEYYLPAFLSI*FKTLKHSLNKK*PFKNE**MAAHAILQ*K*DGLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISP,, CENPK:NM_001267038[1,11]-RFC1:NM_001204747[12,25];CENPK:NM_022145[1,11]-RFC1:NM_001204747[12,25];CENPK:NM_001267038[1,11]-RFC1:NM_002913[12,25];CENPK:NM_022145[1,11]-RFC1:NM_002913[12,25];; geneB_transcripts=NM_001204747,NM_002913 ,,,,, 2,2,2,2,, MV4_11_RNAseq_1 TMSB4X chrX 12995161 + 3utr RAB43,ISY1-RAB43,ISY1 chr3 128852960 - coding > 53 0 138 242 0.830 0.000 160 0 0.030 0.000 139 138 42788 321 AAGAGGTTGGATCAAGTTTAAATGCCTGTGCGGCCCCTTTCACATCAAAGAACTACTGACAACGAAGGCCGCGCCTGCCTTTCCCATCTGTCTATCTATCTGGCTGGCAGGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAGGAGGAAGAGATCAACATCTATGCAGTCACCGAGGAGGAGTCGGACGAGGAAGGCAGCCAGGAGAAAGGAGGGGACGACAGCCAGCAGAAGTTCATTGCTCACGTCCCTGTTCCCTCGCAGCAAGAGATTGAGGAGGCACTGGTGCGAAGGAAGAAAATGGAACTCCTCCAGAAGTATGCAAGCGAGACCCTGCAGGCCCAAAGTGAAGAAGCCAGAAGGCTCCTGGGGTATTAG CTX 160.00 LQ 2 NLoss 0,0,0,3,3,3 NM_021109,NM_021109,NM_021109,,, ,,,,, 3,3,3,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001199469,NM_001204890,NM_020701,NM_001199469,NM_001204890,NM_020701 229,207,207,229,207,207 10,9,9,,, tuple,tuple,tuple,tuple,tuple,tuple 686,620,620,686,620,620 924,996,858,924,996,858 46,46,46,,, ,,,,, RGWIKFKCLCGPFHIKELLTTKAAPAFPICLSIWLAGKERTCMLVKEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGY*,RGWIKFKCLCGPFHIKELLTTKAAPAFPICLSIWLAGKERTCMLVKEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGY*,RGWIKFKCLCGPFHIKELLTTKAAPAFPICLSIWLAGKERTCMLVKEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGY*,,, TMSB4X:NM_021109[1,3]-ISY1:NM_001199469[10,12];TMSB4X:NM_021109[1,3]-ISY1-RAB43:NM_001204890[9,13];TMSB4X:NM_021109[1,3]-ISY1:NM_020701[9,11];;; geneB_transcripts=NM_001199469,NM_001204890,NM_020701 ,,,,, 1,1,1,,, MV4_11_RNAseq_1 TIAL1 chr10 121341454 - coding PFN1 chr17 4849035 + 3utr > 0 9 82 365 0.000 0.030 1 158 0.000 0.060 82 99 625 3463 AAAAGATACTTCCAATCACTTCCATGTGTTTGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCATTTACCTGGGTAGGGGGAGGTGTCTGTCCATCCAGCCCTGGCCCCCAGCCCATGTGGTTTTGGCAGCAATAAGGGGTATGGGGTAATGGCCCAAAAAATAAAATGGTTTGTGTGTGTATGGGGAGGAAAGGGGTGCAAAGCTGTGGGGAGCGGTGAAGGGGAAGGGACAGACGAGGTCAGTACTGGGAACGCCGAAGGTGGGAGGCCATTTCATAACATTTCTTGTTGATCAAACCACCGTGGACACCTTCTTTGCCCATCAGCAGGACTAGCGTCTTGTCAGTCTTGGTGACAGTGACATTGAAGGTGGGGGCCCCACCGGTGCTCTTGGTACGAAGCTCCATGCTAAATTCCCCATCCTGTACCAGTGAGTCCCGGACCACCG CTX 158.00 LQ 0 CLoss , NM_001033925,NM_003252 , , , 402,351 , , NM_005022,NM_005022 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005022;geneB_transcript_strand_disagree=NM_005022;geneb_utr_codons=13 , , MV4_11_RNAseq_1 AASDH chr4 57204463 - 3utr PTGS1 chr9 125152217 + intron > 4 0 72 76 0.000 0.000 156 1 0.360 0.000 74 75 14 22 AAGATATTTGAAAATATTTTACCATTATACATCATGTGGACTTATTTTATATTAAAGAAAGAAGATTATATTTTGGCAACAGAGTGAGACAGTGTCTAAAAAAAAACCCACAAAAAAAAAAATGAGGAAGCTGAGACTCAGAGGGGCTTCC CTX 156.00 LQ 0 other ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286668,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286669,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286670,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_001286671,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806,NM_181806 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591,NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186,1297,1153,970,859,859,1111,1186 1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689,1800,1656,1473,1362,1362,1614,1689 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_000962,NM_001271164,NM_001271165,NM_001271166,NM_001271367,NM_001271368,NM_080591 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 BAP1 chr3 52435024 - 3utr CAP1 chr1 40537925 + 3utr > 1 20 128 83 0.000 0.470 15 148 0.010 0.060 129 132 1 2463 TAGTGTCTGAGTGGGGGGTGCTGGCAAGTGTGGCAGCTGCCTCTGGGCTGAGCACAGCTTGACCCCTCTAGCCCCTGTAAATACTGGATCAATGAATGAATAAAACTCTCCTAAGAATCTCCTGAGAAAAAAAAAAAAAAAAAAAACAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAATCCTTCTTCCCTGCCAGGTGCCTGTCACCTG CTX 155.95 LQ 0 other , NM_004656,NM_004656 , , , , , , NM_001105530,NM_006367 , , , , , , , , ; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HECTD3 chr1 45469952 - coding GTF2F1,MIR6885,MIR6790 chr19 6378732 - intergenic > 4 0 138 78 0.000 0.000 154 1 0.040 0.000 139 128 91 29 CAACTGGTCCAGAAGGCACGGCTAGAGGAGAGCAAGGAGCAGGTGGCAGCTATGCAGGCAGGTCTGCTGAAGGTGGTACCACAGGCTGTGCTGGACTTGCTGACCTGGCAAGAGTTGGAGAAGAAAGTCTGTGGGAATCCGGGGTGGCCTACTTTGCAGGCAGTCCTTCCAGATGGTTCAGCCTTGGCTTTCGCTAGCTACCCAG CTX 154.00 LQ 0 CLoss NM_024602 2240 geneB_no_transcripts MV4_11_RNAseq_1 SNHG1 chr11 62619460 - 3utr LYRM2 chr6 90346417 - 3utr > 0 5 112 326 0.000 0.000 0 153 0.000 0.110 112 125 5 270 GCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACCCTGAGATTCACATTCACTAGAATGGCTGTAATTAAAAAGAGAAATAATAATAAGTCTTGGTGAAGATGTACAGAAATTACAGAACCCTCATACATTGCTGGTGGGAATGTAAAATGGTGTAGCCACTTCAGAAAACAGACGGTCAGTTCCTCAAAAGATGAAACAGCTGCTGTATGAGTTAGCACTTCTACCCCATGCCCATAGCCATTATTTGGCACTAAAAAGAAACGAAGGACTTATATATACTAAACATGGATAAACCTTGAAAACGTTAAGTGAAAGAAGCCGGTCACAAAAGATCACG CTX 153.00 LQ 0 other NM_020466 267 geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 MV4_11_RNAseq_1 PIK3AP1 chr10 98510701 + intergenic SRGN chr10 70864292 + 3utr > 6 33 83 121 0.000 0.060 162 116 1.000 0.000 84 84 21 105229 TGGACAATTACACAGAGGTCCTCAAACCCCACGGACTCTTGGTCTGGGCCCAATAAAGCCGTTTAATTCCTAAAAAAAAAAAAAAAAAAAAATAATGAAACACAGTGAATTTGTAGAGTGGGGGTATTTGACATATTTTACAGGGTGGAGTATACTATATACTTATACCGTTGAATGTGTTTGCAGATCTAGGGGATGTGTTTGTCTACAATTATTATTTCT INS 152.28 LQ 0 other 0 NM_152309 NM_002727 477 geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 MV4_11_RNAseq_1 SUGT1 chr13 53226994 - 5utr RNF111 chr15 59373303 + coding > 4 0 141 80 0.000 0.000 152 1 0.140 0.000 142 130 68 15 GGGTCCTCGTCGATTAGGGCATCCGAGAAGCTCTGGAAAAACCTCTGGGATGTTGCAGTTCCTGCTGCAGCCGCCGCCATCCCTCGTAGTCGCTGTTGCTGCCGCCGGAGCTGCTACTATCACGGTTACCACCCCCACCACCAACTCACTTAGCCAGTACAGCTGCACCAATCCCTCAGCATCTTCCTCCTACACACCAGCCAATTTCAC CTX 152.00 LQ 2 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001130912,NM_006704,NM_001130912,NM_006704,NM_001130912,NM_006704,NM_001130912,NM_006704,,,, ,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001270528,NM_001270528,NM_001270529,NM_001270529,NM_001270530,NM_001270530,NM_017610,NM_017610,NM_001270528,NM_001270529,NM_001270530,NM_017610 706,706,705,705,706,706,706,706,706,705,706,706 8,8,8,8,8,8,8,8,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 2117,2117,2114,2114,2117,2117,2117,2117,2117,2114,2117,2117 2988,2988,2958,2958,2985,2985,2961,2961,2988,2958,2985,2961 43,43,43,43,43,43,43,43,,,, ,,,,,,,,,,, VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,VLVD*GIREALEKPLGCCSSCCSRRHPS*SLLLPPELLLSRLPPPPPTHLASTAAPIPQHLPPTHQPIS,,,, SUGT1:NM_001130912[1,1]-RNF111:NM_001270528[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270528[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_001270529[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270529[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_001270530[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_001270530[8,14];SUGT1:NM_001130912[1,1]-RNF111:NM_017610[8,14];SUGT1:NM_006704[1,1]-RNF111:NM_017610[8,14];;;; geneB_transcripts=NM_001270528,NM_001270529,NM_001270530,NM_017610 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 PFN1 chr17 4848950 - 3utr SPN chr16 29681198 + 3utr > 8 0 324 138 0.000 0.000 152 0 0.890 0.070 325 325 25 435 CAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTTCGGCGTTCCCAGTACTGACCTCGTCTGTCCCTTCCCCTTCACCGCTCCCCACAGCTTTGCACCCCTTTCCTCCCCATACACACACAAACCATTTTATTTTTTGGGCCATTACCCCATACCCCTTATTGCTGCCAAAACCACATGGGCTGGGGGCCAGGGCTGGATGGACAGACACCTCCCCCTACCCATATCCCTCCCGTGTGTGGTTGGAAAACTTTTGTTTTTTGGGGTTTTTTTTTTCTGAATAAAAAAGATTCTACTAAAAAAAAAAAAAAGGAGATAGAGCAAGGAACAGTAAGAAAATAGTTGGGTGCAGTGGCTATGCGGTGGCACTATAGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGGCAACATAGACCAGATCGGAAGAGCGTCG CTX 152.00 LQ 0 other , NM_005022,NM_005022 , , , , , , NM_001030288,NM_003123 , , , , 1203,1203 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001030288,NM_003123;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CALR,MIR6515 chr19 13054904 - 3utr RAB31 chr18 9859587 + 3utr ? 1 4 140 147 0.000 0.000 8 296 0.320 0.230 145 135 1520 93 CTGCCCCCCAGGGGGGAGGGGAGAAAAGAGAAGAGAGAAGGGGACAGAGGCAAGAAAAGATGTTGATCAAGAAAGATGAGAACCAGGGGTGAGGGCTGAAGGAGAATCAAAGATAAAATACCAGTTTAAAAAAAAAAAAAAAAAAAAAAACCTTTAAAAATTGTTGGATGTGTACAAAAGTCTTACTGCCTTATTATGTGTATGGGATTCTAAAGTGGCATTCCACTTGGATTTCCTGTGCTACCTATCCAAATTCCAGTAACTACTTCAGTGTCATTGCCT CTX 152.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 UBL5 chr19 9940765 + 3utr CUL4B chrX 119642423 + intergenic > 10 0 110 98 0.530 0.000 150 1 0.680 0.010 140 151 13996 0 TCCACGTGTCCCTCTGGGACTATGAACCACACGATGCGATGAACCTGGAGATTCATTATCAATAGATGAGAATCCTCTTCTTCCTGCCCCTCTTTCCTCTCCCATCCTCATCCCCCACACTGGGATAGATGCTTGTTTGTAACAACTCACCCCCTTTTGAATAAAACAAAGATCTTAATACATTTTAACTCCAAACTTTTACCTTCCATCTTCCATGTTAGCTTGTCTAGTATTTTAGTGCTACTCTT CTX 150.47 LQ 0 other 0,0,0,0 NM_001048241,NM_001048241,NM_024292,NM_024292 ,,, ,,, ,,, ,,, ,,, ,,, NM_001079872,NM_003588,NM_001079872,NM_003588 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 PRDX1 chr1 45987548 + 5utr COX6B1 chr19 36142172 + coding > 6 0 346 236 0.020 0.000 150 0 0.140 0.000 348 343 154 11176 CTCCTCCTTGTTTCTTAGGTGTATTGACCCATGCTAGATGACAGAAGTGAGAATCCACAGAAGCACCAATCACTTGGCAGTTGAGTTTCTTAAATTCTTCTGCCCTATCACTGAAAGCAATGATCTCCGTGGGGCACACAAAGGTGAAGTCAAGAGGGTAAAAGAAGAACACAACATATTTTCCTTTGTAGTCAGACAGGCTGATATCTTTAAACTGACCATCTGGCATAACAGCTGTGGCTTTGAAGTTGGGGGCAGGGTGCCCAATTTTAGCATTTCCTGAAGACATCTTCCTATCAGCAGTCCCAACACAAGTCGCAGAAACTAACCACCGACACCAGGCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGACTAGAAACTGCTGGCAGAACTACCTGGACTTCCACCGCTGTCAGAAGGCAATGACCGCTAAAGGAGGCGATATCTCTGTGTGCGAATGGTACCAGCGTGTGTACCAGTCCCTCTGCCCCACATCCTGGGTCACAGACTGGGATGAGCAACGGGCTGAAGGCACGTTTCCCGGGAAGATCTGAA CTX 150.00 LQ 0 NLoss 0,0,0,0,3 NM_001202431,NM_002574,NM_181696,NM_181697, ,,,, 1,1,1,1, ,,,, ,,,, ,,,, ,,,, NM_001863,NM_001863,NM_001863,NM_001863,NM_001863 9,9,9,9,9 2,2,2,2, blat,blat,blat,blat,blat 27,27,27,27,27 261,261,261,261,261 114,114,114,114, ,,,, SSLFLRCIDPC*MTEVRIHRSTNHLAVEFLKFFCPITESNDLRGAHKGEVKRVKEEHNIFSFVVRQADIFKLTIWHNSCGFEVGGRVPNFSIS*RHLPISSPNTSRRN*PPTPGKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI*,SSLFLRCIDPC*MTEVRIHRSTNHLAVEFLKFFCPITESNDLRGAHKGEVKRVKEEHNIFSFVVRQADIFKLTIWHNSCGFEVGGRVPNFSIS*RHLPISSPNTSRRN*PPTPGKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI*,SSLFLRCIDPC*MTEVRIHRSTNHLAVEFLKFFCPITESNDLRGAHKGEVKRVKEEHNIFSFVVRQADIFKLTIWHNSCGFEVGGRVPNFSIS*RHLPISSPNTSRRN*PPTPGKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI*,SSLFLRCIDPC*MTEVRIHRSTNHLAVEFLKFFCPITESNDLRGAHKGEVKRVKEEHNIFSFVVRQADIFKLTIWHNSCGFEVGGRVPNFSIS*RHLPISSPNTSRRN*PPTPGKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI*, PRDX1:NM_001202431[1,1]-COX6B1:NM_001863[2,4];PRDX1:NM_002574[1,1]-COX6B1:NM_001863[2,4];PRDX1:NM_181696[1,1]-COX6B1:NM_001863[2,4];PRDX1:NM_181697[1,1]-COX6B1:NM_001863[2,4]; geneB_transcripts=NM_001863 ,,,, 1,1,1,1, MV4_11_RNAseq_1 LOC101929596 chr2 38708943 - intron SPIN1 chr9 91093382 + 3utr > 6 0 179 85 0.800 0.000 150 1 1.000 0.000 180 194 130 456 CGGATCTGCTGCATCTGCTTGGAGCCCACATTGTCTGCTCCCACAATGAAACATTTCGGATAATCATCCAATAGTTGGATGATCTTAAGGAAGTAGTTGGACTTCCAGGTCGCCCTGTCTTCCCTGGGCATCACGGCGGTGCGTCAGGGATTGCCACGCAGGGTTTAAAGACGATGTCACTTCCACGAGGACGCAGAGGTCTTCGTGTTCACATTTTAAAATTAGGTAAATGACCTCATCTTTCAAGCTTGAATTCATTTTTAATTTTAATTTTATTT CTX 150.00 LQ 0 other NM_006717 789 geneB_no_inframe_contig_found geneB_transcripts=NM_006717;geneb_utr_codons=13 MV4_11_RNAseq_1 IDH3A chr15 78462538 - 3utr ZWINT chr10 58118708 - coding > 3 0 77 149 0.490 0.000 150 0 0.040 0.000 78 72 325 1102 TTGTGGGGACAGAGGGTAACTGTTCATGAAAATAGTGAGTGTCTGAAGATTAAGAAAATCATGCTGCACAACAGGAGAAGCATCTGCAGCATCTGGCGGAGGTTTCTGCAGAGGTGAGGGAGCGTAAGACAGGGACTCAGCAGGAGCTTGACAGGGTGTTTCAGAAACTTGGAAACCTGAAGCAGCAGGCAGAACAGGAGCGGGACAAGCTGCAGAGGTATCAG CTX 150.00 LQ 0 NLoss 0,0,0,0,0,0 NM_005530,NM_005530,NM_005530,,, ,,,,, 11,11,11,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001005413,NM_007057,NM_032997,NM_001005413,NM_007057,NM_032997 161,161,161,161,161,161 6,6,6,,, tuple,tuple,tuple,tuple,tuple,tuple 481,481,481,481,481,481 693,834,834,693,834,834 24,24,24,,, ,,,,, VGTEGNCS*K**VSED*ENHAAQQEKHLQHLAEVSAEVRERKTGTQQELDRVFQKLGNLKQQAEQERDKLQRYQ,VGTEGNCS*K**VSED*ENHAAQQEKHLQHLAEVSAEVRERKTGTQQELDRVFQKLGNLKQQAEQERDKLQRYQ,VGTEGNCS*K**VSED*ENHAAQQEKHLQHLAEVSAEVRERKTGTQQELDRVFQKLGNLKQQAEQERDKLQRYQ,,, IDH3A:NM_005530[1,11]-ZWINT:NM_001005413[6,9];IDH3A:NM_005530[1,11]-ZWINT:NM_007057[6,9];IDH3A:NM_005530[1,11]-ZWINT:NM_032997[6,8];;; geneB_transcripts=NM_001005413,NM_007057,NM_032997 ,,,,, 2,2,2,,, MV4_11_RNAseq_1 TRAPPC5 chr19 7747735 + 3utr EEF1A2 chr20 62129187 - 5utr > 6 0 138 81 0.000 0.000 150 1 0.290 0.000 139 158 1099 397 TGCGCACACACGGCGGCTTCCCTGCCCAGGTGCCGGCGCACTGGCATAAGGTCACCACGCTCATGATCAAGTTCGAAGAGGCAGTCATCGCTCGAGACCGTGCCCTGGAGGGCCGCTGACCCTGCCGGAGATAAAGGATACAGCGAGCTCGGCTCCGGAATCACTGCAGCCCCCCTCGCCCTGAGCCAGAGCACCCCGGGTCCCGCCAGCCCCTCACACTCCCAGCAAAATGGGCAAG CTX 150.00 LQ 0 other 0,0,0,0 NM_001042461,NM_001042462,NM_174894, ,,, 2,2,2, ,,, ,,, ,,, ,,, NM_001958,NM_001958,NM_001958,NM_001958 -23,-23,-23,-23 2,2,2, tuple,tuple,tuple,tuple ,,, 1392,1392,1392,1392 55,55,55, ,,, AHTRRLPCPGAGALA*GHHAHDQVRRGSHRSRPCPGGPLTLPEIKDTASSAPESLQPPSP*ARAPRVPPAPHTPSKMGK,AHTRRLPCPGAGALA*GHHAHDQVRRGSHRSRPCPGGPLTLPEIKDTASSAPESLQPPSP*ARAPRVPPAPHTPSKMGK,AHTRRLPCPGAGALA*GHHAHDQVRRGSHRSRPCPGGPLTLPEIKDTASSAPESLQPPSP*ARAPRVPPAPHTPSKMGK, TRAPPC5:NM_001042461[1,2]-EEF1A2:NM_001958[2,8];TRAPPC5:NM_001042462[1,2]-EEF1A2:NM_001958[2,8];TRAPPC5:NM_174894[1,2]-EEF1A2:NM_001958[2,8]; geneB_transcripts=NM_001958;geneb_utr_codons=13 ,,, 1,1,1, MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr PCBD2 chr5 134250977 + intron > 23 2 73 145 0.000 0.000 101 132 0.080 0.030 73 73 21481 182 GTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGTGACAAAGCGAGACTGTGTCTCAAAAAAAGAAAAAAAAGGACATATCCATTGTCCTAACCTAGAAATTTATCTTCTAAATATTGTTCTGCATGTATGCAAATAGGATGTATGGGGATGTCTATTAAAGCCTGATGGGCC CTX 149.56 LQ 1 other NM_000239 NM_032151 216 393 geneB_no_inframe_contig_found geneB_transcripts=NM_032151 MV4_11_RNAseq_1 LYN chr8 56923080 - 3utr CLP1 chr11 57428880 + coding > 4 0 138 75 0.000 0.000 149 1 0.010 0.000 139 128 356 269 AAAATCATTGAAATCTGGGAAAGACATTTTTAAGCTGCTGACTTCACCTGCAAAATCTAACAGGTTGGATTAGTTTTTTTTTTTTTTTAAACAAGTAAGCCAAAGCACAAAGAAATGTCATGCTATGTGGATATCCGGTTCATGGATCTGAAGTAGAGATCAGCAGGAAGCCTTGCTGCCTGGGACATAGAGATCATCTGGC CTX 149.00 LQ 2 NLoss ,,, NM_001111097,NM_001111097,NM_002350,NM_002350 ,,, ,,, ,,, ,,, ,,, ,,, NM_001142597,NM_006831,NM_001142597,NM_006831 ,,, ,,, ,,, 1058,1250,1058,1250 1086,1278,1086,1278 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142597,NM_006831 ,,, ,,, MV4_11_RNAseq_1 PFN1 chr17 4848947 - 3utr ARID3A chr19 972806 + intergenic > 8 0 324 154 0.620 0.000 149 0 0.890 0.000 325 326 25 102 CAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTTCGGCGTTCCCAGTACTGACCTCGTCTGTCCCTTCCCCTTCACCGCTCCCCACAGCTTTGCACCCCTTTCCTCCCCATACACACACAAACCATTTTATTTTTTGGGCCATTACCCCATACCCCTTATTGCTGCCAAAACCACATGGGCTGGGGGCCAGGGCTGGATGGACAGACACCTCCCCCTACCCATATCCCTCCCGTGTGTGGTTGGAAAACTTTTGTTTTTTGGGGTTTTTTTTTTCTGAATAAAAAAGATTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCACCTTTTTATTTTTCCCATGACCAATTTGGGTCCCTTTGTCCATTTCTGGGGGTGCGTTGGGCAGCTGTGAGCCCAGCACATCGGATCCCTGGGGCTAGAGCCGCGGAGCCAATGAACTCAGGCG CTX 149.00 LQ 0 other 0 NM_005022 NM_005224 1782 geneB_no_transcripts MV4_11_RNAseq_1 TMEM14B chr6 10757214 + 3utr KHDRBS1 chr1 32508884 + 5utr > 3 0 110 148 0.680 0.000 148 0 0.560 0.000 111 112 26 2534 CTCTTGAGAGATTTAGAATATCTTTTCTTTTGCTCATCTTAGACCACAGACTGACTTTGAAATTATGTTAAGTGAAATATCAATGAAAATAAAGTTTACTATAAATAATAAAAAAAAAAAAACAACAAAATTAGGCTTGTAAAACTGACTTTTTCATTACGTGGGTTTTGAAATCTAGCCCCAGACATACTGTGTTGAGAGATACTTAGAGGGAGGGAGTAGGTTTTGAAGAGGTTGATGGTGGTGGGGAGGGAAGGCC CTX 148.00 LQ 0 other ,,,,,,,,, NM_001127711,NM_001127711,NM_001286484,NM_001286484,NM_001286488,NM_001286488,NM_001286489,NM_001286489,NM_030969,NM_030969 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,293,293,191,191,, ,,,,,,,,, ,,,,,,,,, NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559,NM_001271878,NM_006559 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 1215,1332,1215,1332,1215,1332,1215,1332,1215,1332 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001271878,NM_006559;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 DGKI chr7 137198582 - intron TMF1 chr3 69082796 - coding > 7 0 125 94 0.940 0.000 148 1 0.600 0.000 148 159 18315 78 CAGACGTGTGCTCTTCCGATCTTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTCCTCCACTTGGCTCTCATGGCGCAGAGGTTTCCAAAAAAATGGCGCTAAGGGAAGACCATTGCTTCGACAAATAGAAAAGTTGCAAGCAACCCTGGGATCCCAGACATCGTCGTGGGAGAAATTAGAGAAGAATCTTTCTGATAGGCG CTX 148.00 LQ 0 NLoss 0,0 NM_004717, , 21, , 2248, , , NM_007114,NM_007114 768,768 10, blat,blat 2304,2304 3282,3282 53, , QTCALPIFHGATS*RFTWTSASSFFFCASACAFASSSTWLSWRRGFQKNGAKGRPLLRQIEKLQATLGSQTSSWEKLEKNLSDR, DGKI:NM_004717[1,21]-TMF1:NM_007114[10,17]; geneB_transcripts=NM_007114 , 0, MV4_11_RNAseq_1 ACTG1 chr17 79477007 - 3utr LOC101927151 chr19 28297942 + intergenic > 3 0 122 142 0.930 0.000 147 0 1.000 0.000 157 165 4111 78 CACTCTTTCCCTACACGACGCTCTTCCGATCTGTTTTTTTTTGTACGCAATTCTCGATTCTTTGAAGAGATGACAACAAATTTTGGTTTTCTACTGTTATGTGAGAACATTAGGCCCCAGCAACACGTCATTGTGTAAGGAAAAATAAAAGTGCTGCCGTAACACAAAAAAAAAAAAAACATAGTTAGTAGAAGAAAAAAATCATAGGATTATAGGATTAGAGCAGAAAAAAATAAAATAAAACAAAAACTACAAAAGATTAATGAAAATATTTGGCCTTTTAGAAAAGTTAAAAATTGGCAAACCTTCAG CTX 147.00 LQ 0 other , NM_001199954,NM_001614 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 FAU chr11 64888106 - 3utr TADA2A chr17 35838223 + intergenic > 5 0 96 80 0.660 0.000 146 0 1.000 0.000 98 101 2133 134 GCAACGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCCCAATTCCAACTCTTAAGTCTTTTGTAATTCTGGCTTTCTCTAATAAAAAAGCCCTTTAGTTCAAAAAAAAAAAAAACAAAAAAAAACCTTTAATGTCTGGCTTTGTACTTTGCAGTCTGCCTGTCTAATCTGCAGTAGTCTTT CTX 146.00 LQ 2 other 0,0 NM_001997,NM_001997 , , , , , , NM_001488,NM_001166105 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ROMO1 chr20 34288901 + 3utr TNPO2 chr19 12810489 - 3utr > 4 0 161 255 0.010 0.000 146 0 0.270 0.000 162 164 30 210 AGCTGATGGGCGGCATTGGGAAAACCATGATGCAGAGTGGCGGCACCTTTGGCACATTCATGGCCATTGGGATGGGCATCCGATGCTAACCATGGTTGCCAACTACATCTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAAGAAAGTCTTTGAGTAAAAAAAAAAAAAAAAAGTTTTAAAAATACCTTTTAATTTTCTGGTAATTCCAGTTCTTTGAAGCATCCTCTGCTGGGTCTTGGGGTGTGTGGATGGATTGGCTGTCTGATGGGATTGGTAACCCCTCGCTACTCAAGATGGGGGGATACAAACACCTTCAGGGAAGGGGAGCCTGGTTCTTCTCGTTTTCCTTTTTTTTTTTTTTTAAAAAAAAAACTATTTAATTTTTTAATTTATTTTTGGTTGTTTTTTGCACG CTX 146.00 LQ 0 other ,, NM_080748,NM_080748,NM_080748 ,, ,, ,, ,, ,, ,, NM_001136195,NM_001136196,NM_013433 ,, ,, ,, ,, 2664,2694,2664 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001136195,NM_001136196,NM_013433;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 MAP3K13 chr3 185135186 - intron SPN chr16 29681812 + 3utr > 2 1 79 144 0.690 0.000 142 11 1.000 0.010 80 83 17 1085 TAAATTTGATTATTCCATAAAGGTAAAATCATTTTGGAAAGCTTCTTTTGAATAAAGACCTAATTATACAGGAAAAAAAAAAAAAAAAATTTAAAAAAAGAAAATATAAAATATGGTATAAGATTAAATATATTAGTTATGAAAATAATTGTAAATGGCTTATTGAACTTATAGTCAGTAAAAATCATGTTTTTGAAAATTATGTAATGACTTTGGAAAATACCAG CTX 145.41 LQ 0 other ,,,,, NM_001242314,NM_001242314,NM_001242317,NM_001242317,NM_004721,NM_004721 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001030288,NM_003123,NM_001030288,NM_003123,NM_001030288,NM_003123 ,,,,, ,,,,, ,,,,, ,,,,, 1203,1203,1203,1203,1203,1203 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001030288,NM_003123;geneb_utr_codons=4 ,,,,, ,,,,, MV4_11_RNAseq_1 CNN2 chr19 1038601 + 3utr ZNF33B chr10 43085881 - 3utr > 4 0 133 86 0.000 0.000 144 1 0.030 0.000 134 131 333 4 CTGCCCCGGGGCCAGGTGGAGAAAGTGAGGGCCGTACAAGGAAGTGAAATTCTGAGTTGTTGGGGCTAAGCCTGACCCCCTCTCCATGCTCCCCGCCCCAACCCACTCTGGCCTCAGTAGATTTTTTTTTCAGCCTGGGCAACATAGCGAGACTCCATCTCAATAAAATTAATAATAATAAAACCTTCCAAAAAAAGTGCCGGGACCAAATGGATTCACT CTX 144.00 LQ 0 other , NM_004368,NM_201277 , , , , , , NM_006955,NM_006955 , , , , 2337,2337 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_006955;geneb_utr_codons=13 , , MV4_11_RNAseq_1 SLC25A25-AS1 chr9 130873918 + 3utr NFX1 chr9 33294901 + coding > 2 1 164 137 0.010 0.030 140 7 0.180 0.010 165 165 15 143 CAGGTGTGGTGGTGGGCACCTGTAGTCGCAGCTACTCGAGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGAAGGTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCCTGGGCTACAGAGCGAGACTATGTCTCAAAAAAAGAAAAAAAAAAAAGCAACACAGTTTGTATACAGCTATGGTAGAGGACCAAAAGTCAAGGGGAAACTCAAATGTGAATGGAGTAACCGAACAACTCCAAAACCGGAGGATGCTGGACCCGAAAGTACCAAACCTGTGGGGGTTTTCCAC INS 142.73 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_002504,NM_147133,NM_147134 170,170,170 ,, tuple,tuple,tuple 509,509,509 3363,3075,2502 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_002504,NM_147133,NM_147134 ,, ,, MV4_11_RNAseq_1 SERP1 chr3 150262007 - 3utr CAP1 chr1 40537925 + 3utr > 8 32 81 63 0.480 0.520 115 271 0.120 0.060 81 88 458 2463 GTCATTCCAAGTTTTCTAGTCCATACCACAGTGCCTTGCAAAAAACACCACATGAATAAAGCAATAAAATTTGATTGTTAAAAAGAAAAAAAAAAAAAAAAACAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAATCCTTCTTCCC CTX 141.06 LQ 0 other , NM_014445,NM_014445 , , , , , , NM_001105530,NM_006367 , , , , , , , , ; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ODC1 chr2 10580509 - 3utr MAX chr14 65489393 + intron > 0 3 166 81 0.000 0.000 0 138 1.000 0.080 166 181 115 94 ATTTGAATATTTGTTTTATATGGATTTTTATTCACTCTTCAGACACGCTACTCAAGAGTGCCCCTCAGCTGCTGAACAAGCATTTGTAGCTTGTACAATGGCAGAATGGGCCAAAAGCTTAGTGTTGTGACCTGTTTTTAAAATAAAGTATCTTGAAATAATTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAGTCATTTTTACAACTCTCATGTGAATTCCCTTTGAGGTGGAAAATGGAGGCTAGAGCCAGATACA CTX 138.00 LQ 0 other ,,,,,,,,,,,,,,,,,,, NM_001287188,NM_001287188,NM_001287188,NM_001287188,NM_001287188,NM_001287189,NM_001287189,NM_001287189,NM_001287189,NM_001287189,NM_001287190,NM_001287190,NM_001287190,NM_001287190,NM_001287190,NM_002539,NM_002539,NM_002539,NM_002539,NM_002539 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_001202558,NM_001202559,NM_001271069,NM_002028,NM_197957,NM_001202558,NM_001202559,NM_001271069,NM_002028,NM_197957,NM_001202558,NM_001202559,NM_001271069,NM_002028,NM_197957,NM_001202558,NM_001202559,NM_001271069,NM_002028,NM_197957 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, 237,558,,375,,237,558,,375,,237,558,,375,,237,558,,375, 1176,1497,,1314,,1176,1497,,1314,,1176,1497,,1314,,1176,1497,,1314, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001202558,NM_001202559,NM_001271069,NM_002028,NM_197957;geneB_transcript_strand_disagree=NM_001271069;geneB_transcript_strand_disagree=NM_197957 ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 GGA2 chr16 23478709 - 3utr SRSF11 chr1 70716959 + 3utr > 11 0 426 145 0.020 0.000 138 0 0.160 0.000 462 478 300 1743 CTCCGTAATCTCATATTTCTCTTTTTCTGTGCCAAAGTCAATGAGAGTGAAGCTGCAGCCGGCATCCAGCTCCAAGCTTCCTGCATTCAGTCCTTTGATGCCTCCAGCTGTGATATCTCAGATGCTGCTGCTTGACAATCCACACAAAGAACCTATCCGCTTACGGTACAAGCTGACATTCAACCAAGGTGGACAGCCTTTCAGCGAAGTAGGAGAAGTGAAAGACTTCCCAGACCTGGCTGTCTTGGGCGCAGCCTAACTTTTCACAAGATGGACCCTTCATTTCAAGCTTAGGCTGGCGTTACTTTTGCTGTCTAGTCAGGACTAATCACGGTGTTTCAGTGCGGAGTGCCAAGAGTCCTATCCTGACGTCAGGCTCTGGGTGTCAACCTCTGACTTATTCTGCAGATGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGGAGGTTTGTTGACATGACAAATTAACATTCTTATAGTTACATCTGGAAATGAGCATTTGAAATAGATAATCCTTTAAGCTTTGTGGCAAAATTTTTGTGGCTTTTGTTTAACTTTGAAAGGTTATTATGCACTAACCTTTTTTGGTGGCCAGA CTX 138.00 LQ 2 other , NM_015044,NM_015044 , , , , , , NM_001190987,NM_004768 , , , , 1452,1455 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001190987,NM_004768;geneb_utr_codons=13 , , MV4_11_RNAseq_1 FDPS chr1 155290447 + 3utr CUL5 chr11 107977399 + 3utr > 4 0 49 112 0.630 0.000 136 0 0.830 0.000 50 58 1193 354 TGACCTAGAGATTGCAAGGGCGGGGAGAGGAGGCTCTCAATAAATAATCGTGTAACCTTAAAAAAAAATGAAAAAAAAAATCTTACCAGCAGTTTGTAAAGGTCTGGAATCACAGTTGGCATCCTTTATTCAGGTCTCTTCTCTACAGCGTACACTTAAAATTGGTGCCG CTX 136.00 LQ 1 other ,,,,, NM_001039517,NM_001135821,NM_001135822,NM_001242824,NM_001242825,NM_002004 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_003478,NM_003478,NM_003478,NM_003478,NM_003478,NM_003478 ,,,,, ,,,,, ,,,,, ,,,,, 2343,2343,2343,2343,2343,2343 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_003478;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 DPM2 chr9 130698943 - intron FAM117A chr17 47788528 - 3utr > 3 0 290 79 0.000 0.000 136 1 0.080 0.000 291 281 372 90 GATTCCTCAAGTACCATTTGCTAGGCTGTGAGGTGCCTTAGGGCAGGTCTCTTGTGCCCTGTTCTCTTGTCCCCACCACCAACCTATAGCAGGCACCAAAGCAAGTGCCCGGTAAATACCAATAAGAAATTAAGGAAAGAAACAAACCACGACACCCAAATGCCGTAATCTTAAAGAAAAGCAAATGCAGTCCCAGTCCTCTGAATGGGTCAGCCCCTTAGATGGAGGAGGTGGGACGTTTGGGCTTGGGGGCTCGGCAAGGCAAGCAAGACACACCAGAGCCCTTCCCTCTCGGCCTTCGAGCACTTTCTTTCACTTACTGTGTCAAAGCCCTGGGTCCTCTTTTTGATGGGCACCGG CTX 136.00 LQ 0 other NM_003863 94 NM_030802 1362 geneB_no_inframe_contig_found geneB_transcripts=NM_030802;geneb_utr_codons=13 MV4_11_RNAseq_1 HNRNPUL1 chr19 41812843 - 3utr HINT2 chr9 35813293 - coding > 3 0 172 80 0.000 0.000 136 1 0.010 0.000 173 160 877 929 CGCATAATTACCAAAAAAAAGTCACTGCTTCCTCCCCCTCCCCATTTTGCTTTTTAAACTTTTTTTTTTTTAAGTTTTGATTTTTTTTTTAATCCTGAAAAGTAGACAGTAAAACAGCTCCTGGGAGAATTTACAACCAACTGCATGAGGGTCTGGGAAGCTGAGGGGCTGGGAGATGGATACCGACTTGGTGAGTGACTTTTGGCCCTTGGTCCCTCACCTATGAATTCTCATTCCTAC CTX 136.00 LQ 1 NLoss 0,0,3 NM_007040,NM_144732, ,, 15,15, ,, ,, ,, ,, NM_032593,NM_032593,NM_032593 124,124,124 4,4, tuple,tuple,tuple 370,370,370 492,492,492 53,53, ,, RIITKKKSLLPPPPHFAF*TFFFLSFDFFFNPEK*TVKQLLGEFTTNCMRVWEAEGLGDGYRLGE*LLALGPSPMNSHSY,RIITKKKSLLPPPPHFAF*TFFFLSFDFFFNPEK*TVKQLLGEFTTNCMRVWEAEGLGDGYRLGE*LLALGPSPMNSHSY, HNRNPUL1:NM_007040[1,15]-HINT2:NM_032593[4,5];HNRNPUL1:NM_144732[1,15]-HINT2:NM_032593[4,5]; geneB_transcripts=NM_032593 ,, 0,0, MV4_11_RNAseq_1 NT5M chr17 17286666 - intergenic DAB2 chr5 39372745 - 3utr > 28 3 74 183 0.770 0.000 117 136 0.870 1.000 147 149 686 8 AAGGAAGCCGCAGAAAAGGATGTTGAAAAGAAAAAATAAAGCCCTCCTGGGGACTTGGAATCAGTCGGCAGTCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAAAGCCCTCCTGGGGACTTGGAATCAAAAAAAAAAAAAAAAAATCTAATGATTCACAGACAGATCTGGAGCCTCTCTTCATTCTCAGTAATTGCTAGTCCCAAGAACTAGAATTGCAAATGGGCACAACCTATATCCTTCCTGTGGAAGAGGAGGCCACTCTCTTGAGCTGAAGTTCCAGAAGAGCAGTTAATGTTCAAGAGAAATTGAAC CTX 135.97 LQ 0 other 0,0 NM_020201,NM_020201 , , , , , , NM_001244871,NM_001343 , , , , 2250,2313 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001244871,NM_001343;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TMSB4X chrX 12995161 + 3utr MINOS1,MINOS1-NBL1,NBL1 chr1 19923565 + coding > 18 0 131 151 0.750 0.480 256 0 0.030 0.000 132 145 42788 1649 AAGAGGTTGGATCAAGTTTAAATGCCTGTGCGGCCCCTTCCACAGCAAAGAACGACTGACAGCGAAGGCCGCGCCTGCCTTGCCCGTCTGTCTATCTATCTGGCTGGCAGGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGGAGTGGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAGGTACTGGTTTTGGATTAGGAATTGTTTTCTCACTTACCTTCTTTAAAAGAAGAATGTGGCCATTAGCCTTCGGTTCTGGCATGGGATTAGGAATGGCTTATTCCAACTGTCAAGATCGGAA CTX 133.12 LQ 0 NLoss 0,0,0,0,3,3,3,3 NM_021109,NM_021109,NM_021109,NM_021109,,,, ,,,,,,, 3,3,3,3,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001032363,NM_001204083,NM_001204088,NM_001204089,NM_001032363,NM_001204083,NM_001204088,NM_001204089 9,9,-66,-19,9,9,-66,-19 1,1,1,1,,,, blat,blat,tuple,tuple,blat,blat,tuple,tuple 26,26,,,26,26,, 237,423,588,546,237,423,588,546 47,47,51,50,,,, ,,,,,,, EVGSSLNACAAPSTAKND*QRRPRLPCPSVYLSGWQGRKELACW*RKEWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMWPLAFGSGMGLGMAYSNCQDR,EVGSSLNACAAPSTAKND*QRRPRLPCPSVYLSGWQGRKELACW*RKEWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMWPLAFGSGMGLGMAYSNCQDR,KRLDQV*MPVRPLPQQRTTDSEGRACLARLSIYLAGREGKNLHVGEGRSGTGVWRMRS*R*VLVLD*ELFSHLPSLKEECGH*PSVLAWD*EWLIPTVKIG,RGWIKFKCLCGPFHSKERLTAKAAPALPVCLSIWLAGKERTCMLVKEGVGPVSGGCGREDRYWFWIRNCFLTYLL*KKNVAISLRFWHGIRNGLFQLSRSE,,,, TMSB4X:NM_021109[1,3]-MINOS1:NM_001032363[1,4];TMSB4X:NM_021109[1,3]-MINOS1:NM_001204083[1,5];TMSB4X:NM_021109[1,3]-MINOS1-NBL1:NM_001204088[1,5];TMSB4X:NM_021109[1,3]-MINOS1-NBL1:NM_001204089[1,4];;;; geneB_blat_issues=too_many_gaps;geneB_anchor_fail_but_found_blat_hit=NM_001204082 geneB_transcripts=NM_001032363,NM_001204082,NM_001204083,NM_001204088,NM_001204089;geneb_utr_codons=13 ,,,,,,, 2,2,0,1,,,, MV4_11_RNAseq_1 WDR61 chr15 78575577 - 3utr AMN1 chr12 31883539 + intergenic > 4 0 151 124 0.000 0.000 133 0 0.140 0.000 155 152 60 21 TCTATCATGACATTCCTTACCTTCTTAGGCTTGTTTAAAAGAAATATAGCATTTATTGTAGCAAAGACTTAAATTTTGTAGATACAATATGAATCTTTTCATGTTTTATTGGAAATGCTGTTCATACTTTAACATAAAGCTTTCTTAATGCAAAAAAAAAAAAAAGAAAGAAAGAACTGCCTCAAGGACTTTAAAAAATAAACCAAAAAACCCACAATTTCTTCACATCTTTCATGCATTTAATGTTTTGCACAACTTGCTTGTTTTGCAAATATG CTX 133.00 LQ 0 other 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_001113402,NM_001278412,NM_001278411 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 COX7C chr5 85913775 - 5utr ATP6AP1 chrX 153664093 + coding > 3 0 139 100 0.000 0.000 131 1 1.000 0.000 140 146 764 423 GTGGCTCCTACGGACTACTGATGTTGTGATCCTCCGTATTCTCTGGTCCATCATACCGCTGCTGGATGTTCTGAGAAAGGCAAAGAGAATGAGGACAGATGAAATGGCGGCACCTCACCAAGACCTTTTTTTTCACGACCTTGTTCCCCGGTATCTGGATGGGGCTGCTCACCTCCCTGTTCATGCTCTTCATCTTCACCTATGGCCTGCACATGATCCTCAGCCTCAAGACCATGGATCGCTTTG CTX 131.00 LQ 0 NLoss 3 NM_001183 423 blat 1269 1413 geneA_no_transcript_IDs_found geneB_transcripts=NM_001183 MV4_11_RNAseq_1 GSPT1 chr16 12009436 + coding KLHDC3 chr6 42986371 + coding ? 0 6 91 85 0.000 0.150 0 261 0.000 0.020 91 102 256 917 GCACGAAGGGCTTGGCGTTGACGTTGAGTTGCCGGCTGAAGGCCGCGCTGAGGTTCTCCCGCTGGGCCTCGGCCGCCGCCGCCAGGGAGCCACTCGGCCTTTGGCTACAATGGGGAGCTGTACATCTTTGGTGGTTATAATGCAAGGCTGAACCGGCACTTCCCTGACCTCTGGAAGTTTCATCCTGTGTCCTTCACCTGGTAGAGGATTGAAGCGAAGGGGTAGGGGTCTTGTTGCCACCG CTX 130.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 HNRNPC chr14 21678705 - 3utr RBBP6 chr16 24581441 + coding > 3 0 156 155 0.740 0.000 130 0 0.090 0.000 157 143 339 296 TGCATCCTCTAGAAAAATAATTAGTGTTATAGTCTTAAGATTTGTTTTCTAAAGTTGATACTGTGGGTTATTTTTGTGAACAGCCTGATGTTTGGGACCTTTTTTCCTCAAAATAAACAAGTCCTTATTAAACCAGGAATTTGGAGAAAAAAAAAAAAGAAAAACTGAAGAAAAAGGCGTAGATAAAGATTTTGAGTCTTCTTCAATGAAAATCTCGAAACTAGAAGTGACTGAAATAGTGAAACCATCACCAAAGCGCAAAATGGAACCTGATACTGAAAAAATGGATAGGACCCCT CTX 130.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,3,3 NM_001077442,NM_001077443,NM_004500,NM_031314,NM_001077442,NM_001077443,NM_004500,NM_031314,, ,,,,,,,,, 8,8,9,9,8,8,9,9,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_006910,NM_006910,NM_006910,NM_006910,NM_018703,NM_018703,NM_018703,NM_018703,NM_006910,NM_018703 1144,1144,1144,1144,1110,1110,1110,1110,1144,1110 17,17,17,17,16,16,16,16,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 3430,3430,3430,3430,3328,3328,3328,3328,3430,3328 5379,5379,5379,5379,5277,5277,5277,5277,5379,5277 48,48,48,48,48,48,48,48,, ,,,,,,,,, ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,ASSRKIISVIVLRFVF*S*YCGLFL*TA*CLGPFFLKINKSLLNQEFGEKKKRKTEEKGVDKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTP,, HNRNPC:NM_001077442[1,8]-RBBP6:NM_006910[17,18];HNRNPC:NM_001077443[1,8]-RBBP6:NM_006910[17,18];HNRNPC:NM_004500[1,9]-RBBP6:NM_006910[17,18];HNRNPC:NM_031314[1,9]-RBBP6:NM_006910[17,18];HNRNPC:NM_001077442[1,8]-RBBP6:NM_018703[16,17];HNRNPC:NM_001077443[1,8]-RBBP6:NM_018703[16,17];HNRNPC:NM_004500[1,9]-RBBP6:NM_018703[16,17];HNRNPC:NM_031314[1,9]-RBBP6:NM_018703[16,17];; geneB_transcripts=NM_006910,NM_018703 ,,,,,,,,, 1,1,1,1,1,1,1,1,, MV4_11_RNAseq_1 ENGASE chr17 77081424 + coding SMEK1 chr14 91928522 - coding > 3 0 137 129 0.000 0.000 130 0 0.100 0.000 138 150 34 631 CGGCAGCTGCCACATCGGTGGCATCTCAGTGTTGAACGCAGCAACCAGCTCCAGACACAGCCTCCGCCCCCTCCGGGTGCCCCCCACCAAGCTGGCCAGATGGGTGGGCCGCTGCGGCCGGCAGCTGAGTGGGGGCTGGGTCCAGCACTGAAGAGATGTGGTTTAACACAGATGAAGATGACATGGAAGATGGAGAAGCTGTAGTGTCTCCATCTGACAAAACTAAAAATGATGATGATATTATGGATCCAATAAGTAAATTCATGGAAAGGAATAAATTAAAAGAAA CTX 130.00 LQ 0 Fusion 0,0,3,3 NM_001042573,NM_001042573,, ,,, 12,12,, ,,, 1700,1700,, ,,, ,,, NM_001284280,NM_001284281,NM_001284280,NM_001284281 666,440,666,440 13,11,, tuple,tuple,tuple,tuple 1996,1318,1996,1318 2463,1785,2463,1785 49,49,, ,,, AAATSVASQC*TQQPAPDTASAPSGCPPPSWPDGWAAAAGS*VGAGSSTEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERNKLKE,AAATSVASQC*TQQPAPDTASAPSGCPPPSWPDGWAAAAGS*VGAGSSTEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERNKLKE,, ENGASE:NM_001042573[1,12]-SMEK1:NM_001284280[13,15];ENGASE:NM_001042573[1,12]-SMEK1:NM_001284281[11,13];; geneB_transcripts=NM_001284280,NM_001284281 ,,, 2,2,, MV4_11_RNAseq_1 UBL5 chr19 9940792 + 3utr THRIL chr12 125513899 + intergenic > 6 1 373 168 0.520 0.010 90 85 0.250 0.080 373 377 65 204 CTGGTGGCGTCGGCAGGTTCGAGGCGATTCGAGCTCCAGCTAGGATGATCGAGGTTGTTTGCAACGACCGTCTGGGGAAGAAGGTCCGCGTTAAATGCAACACGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCCCAAACTGGTACCCGTTGGAACAAGATTGTCCTGAAGAAGTGGTACACGATTTTTAAGGACCACGTGTCTCTGGGGGACTATGAAATCCACGATGGGATGAACCTGGAGCTTTATTATCAATAGATGAGAATCCTCATCTTCCTGCCCCGCTTTCCTCTCCCATCCTCATCCCCCACACTGGGATAGATGCTTGTTTGTAAAAACTCACCTTAATAAAGACTTAGATGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGCCAGGTGTGGTGGTGGGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATTGTATGAACCTGGGAGGCAGAGGTTGCAGTGAACTGAGATCACACCACTGTACTCCAGTTGAGGCGACAGAGTGAGAC CTX 129.90 LQ 0 other , NM_001048241,NM_024292 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 CHCHD2 chr7 56169266 - 3utr P2RY8 chrX 1589747 - intron > 6 0 349 130 0.660 0.000 128 0 0.130 0.000 350 350 667 64 GTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCCTAATGAAGAAGTTCAACCTGGAGAGATGGAAAATCAGCTCTCATAACTAAGTTAATTTAGTATAAAAATAGAATTGATAGTGAGGGTATAAAGTGTAACCATCAGTTAAACCTCTCCTGTCATTCCTGGCTTCCTTGCTTCAGAATTGAAATGGAAGTGGGGGTGTCCCTACTCTGTAGAATCTGGGACTGGGCAAATGTTTGTGTGGCCTCCTTAAACTAGCTGTTATGTTATGATTTTATTCTTTGTGAGTTAATTAGAATAAAGTCATTTTCTTCCAAAAAAAAAAAAAAAAAAATCAGAAAGAACAAAAATGTCCATCCACAGGAGAATGAATAAACAGAATGTGGTCTATCCACACAGTAGACTATTATGCACCCACTGAAAGGACTCAAGCTCTGACCCAGGCTG CTX 128.00 LQ 2 other NM_016139 NM_178129 1080 geneB_no_inframe_contig_found geneB_transcripts=NM_178129;geneb_utr_codons=8 MV4_11_RNAseq_1 HS3ST4 chr16 26043728 + intron CNBP chr3 128888513 - 3utr > 3 0 256 93 0.970 0.000 128 1 0.020 0.000 257 270 783 11631 GCTTAAGGGAGTTAAGTCTATGCTGAAAGATGGAAAGGGAGAAGAGGACATAAAAACAAATTTGTTTTTCTATACCACAAGGCTTGTGTGCCAAGGTGGCCATGTGTGTCAAAGTCAGGGAATCCCTCCTCCTGGGAGCCAAGAGGAAGTCTCTCAAAACTAGAAGGGAAAGGTGTTTTCTCCACATCAATCCAGCTTTGGAGACATTCTATTAGTGACATATGCCCCTTCCCCCAAAAACAACAATGAAGTGTTCTGTGTGCTAACAAAGTTTTTAAAAGTCAGATGGAAAGAGCAACTGAAGTCCTAGAAAATAGAAATGTAATTTTAAACTATTCCAATAAAGCTGGAGGAGGAAGGGGC CTX 128.00 LQ 2 other ,,,,, NM_006040,NM_006040,NM_006040,NM_006040,NM_006040,NM_006040 ,,,,, ,,,,, ,,,,, 735,735,735,735,735,735 ,,,,, ,,,,, NM_001127192,NM_001127193,NM_001127194,NM_001127195,NM_001127196,NM_003418 ,,,,, ,,,,, ,,,,, ,,,,, 540,537,519,516,513,534 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001127192,NM_001127193,NM_001127194,NM_001127195,NM_001127196,NM_003418;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 UGCG,MIR4668 chr9 114696740 - intergenic LOC101927668,MACC1 chr7 20042777 - intron > 0 3 139 102 0.000 0.880 0 127 0.000 0.200 152 166 1492 2392 GCTCTTCCGATCTAGTAAAGTGAAAAAGTGTTTTCTATAAATATGTAGTTATTGCTGATATGCTACACATTATGCTTTGACATGGAGACTGTAGTAACTCAGAATTTAAAGCTGCCATATTGCCAGTGTTAGCCCTGCAGTAGGCATTCCTGGCGGGCGCTTTAGTTGAACCCAGGTACCTTTCTCTTTGGCTTCTTTCTTTTTCTGATCATTTTCCGGCACACGTTTACGGAAGCTATCTCGGCGCTTAGATCTCTTATTGTGCTCACTCAGCCCAATGATTCAGTTTGATGGCATTTTGCTC CTX 127.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 113408134 - intergenic FAM45A,FAM45B_locA chr10 120896684 + 3utr > 0 9 83 135 0.510 0.520 1 258 0.010 0.010 88 98 0 1379 ATATTGAAAAGCACAGAGGATTTCTTTAGTGTCATTGCCGATTTTGGCTATAACAGTGTCTTTCTAGCCATAATAAAATAAAACAAAAAGTTAAAAAAAAAAAAAAAAAAAAAGGTTTTTCCCGGCCTTTGAACAATTTGCCTATGAGAGGTTTTGATATATTTTTTACTTGAGTAGACAAATTTTATAATCCATTTTTAAACTATCGCAGAAGTAAACATTTGGCAAACGTTT CTX 126.90 LQ 0 other NM_207009 1074 geneB_no_inframe_contig_found geneB_transcripts=NM_207009;geneb_utr_codons=13 MV4_11_RNAseq_1 SLC52A2 chr8 145584697 - 3utr RAB43,ISY1-RAB43,ISY1 chr3 128853797 - coding > 0 3 146 354 0.000 0.000 0 125 0.000 0.010 156 172 497 433 CTTCCGATCTCTGCTCCTTGCCCTTGCCCACCCTGGAAAGCCAGGATCTCCTATGGAGTGTGTAGGTGTCCACGAGTGTACCGGTGTGCGGGCCTCCTGGGCTGCAGGCACTCAGGCATGGTGGCAGCATTGAGGGAAAGACAGGTGTTGGGGAGCTGTTTGAAAAAGAACCTCTTCCTCCTCCCAGAAAGACACGTGCTGAGCTCATGAAGGCAATCGATTTTGAGTACTATGGTTACCTAGATGAAGATGATGGTGTTATTGTGCCTTTGGAACAGGAATATGAAAAGAAACTCAGAGCCGAGTTAGTGGAAAAGTGGAAAGCAGAGAGAGAGGCTCGGCTGGCAAGAGGAGAAAAGGAAGAGGAGGAGGAAGAGGAGGAAGAGATCAACATCTATGCAGCCACCGAGGAGGAGTCGGACGAGGAAGGCAGCCAGGAGAAAGGAGGGGACGACAGCCAGCAGAAGTTCATTGCTCACGTCCCTGTTCCCTCGCAGCAAGAGATTGAGGAGGCACTGGTGCGAAG CTX 125.00 LQ 2 NLoss 0,0,0,0,0,0,0,0,0,3,3,3 NM_001253815,NM_001253816,NM_024531,NM_001253815,NM_001253816,NM_024531,NM_001253815,NM_001253816,NM_024531,,, ,,,,,,,,,,, 5,5,5,5,5,5,5,5,5,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001199469,NM_001199469,NM_001199469,NM_001204890,NM_001204890,NM_001204890,NM_020701,NM_020701,NM_020701,NM_001199469,NM_001204890,NM_020701 162,162,162,140,140,140,140,140,140,162,140,140 9,9,9,8,8,8,8,8,8,,, blat,blat,blat,tuple,tuple,tuple,tuple,tuple,tuple,blat,tuple,tuple 485,485,485,419,419,419,419,419,419,485,419,419 924,924,924,996,996,996,858,858,858,924,996,858 57,57,57,56,56,56,56,56,56,,, ,,,,,,,,,,, SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,SDLCSLPLPTLESQDLLWSV*VSTSVPVCGPPGLQALRHGGSIEGKTGVGELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAATEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVR,,, SLC52A2:NM_001253815[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_001253816[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_024531[1,5]-ISY1:NM_001199469[9,12];SLC52A2:NM_001253815[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_001253816[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_024531[1,5]-ISY1-RAB43:NM_001204890[8,13];SLC52A2:NM_001253815[1,5]-ISY1:NM_020701[8,11];SLC52A2:NM_001253816[1,5]-ISY1:NM_020701[8,11];SLC52A2:NM_024531[1,5]-ISY1:NM_020701[8,11];;; geneB_transcripts=NM_001199469,NM_001204890,NM_020701 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,,, MV4_11_RNAseq_1 JTB chr1 153946888 + 3utr STAT6 chr12 57505098 - 5utr ? 0 21 94 214 0.000 0.100 1 250 0.000 1.000 95 103 148 101 GGGGAAATAAGTTTTGAGTGAGAAATAAACGTTTTAGCTGAAATTGTATCCCAGAAGTTTGAAATAAGTAGTAGAAGAGGGGAAAACACGGGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTGTGCTTTATCTTATTTTTCTTTTTGGTGGTGGTGGTGGAAGGGGGGAGGTGCTAGCAGGGCCAGCCTTGAACTCGCTGGACAGAGCTACAGACCTATGGGGCCTGGAAGTGCCCGCTGAGAAAGGGAGAAGACAGCAGAGGGGTTGCCGAGAGAAAGGCCTATTGGAGGAACCTGAGCAGGAG CTX 125.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 TUBB4B chr9 140138034 + 3utr NA chr3 40803013 + intergenic > 0 3 151 282 0.000 0.890 0 124 0.000 1.000 155 159 4124 22 ATCTAGATGGAGTTCACCGAGGCCGAGAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGATGCCACAGCCGAGGAGGAGGGCGAGTTCGAGGAGGAGGCTGAGGAGGAGGTGGCCTAGAGCCTTCAGTCACTGGGGAAAGCAGGAATGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCAC CTX 124.00 LQ 0 other NM_006088 geneB_no_transcripts MV4_11_RNAseq_1 TGM5 chr15 43524793 - 3utr ARMC1 chr8 66515075 - 3utr > 3 0 149 77 0.000 0.000 124 0 0.350 0.020 150 152 27 1184 TCAGAGGATACTGGTAGGACTTGGCCATGACTTAACTGCCCCCTGCCCCAGATATCCAGGAAAGAAAAAGACAGGCTGAACAGCTCACTGTTGTTTTGTTGTTGCGAAAGCTAATTCCCTAGTATGAATAAACTTCAGACCTTGCTCTCAAAAAAAAAAAAAAAAAAAAAAGCAACAATAACTTTCAGGGCACCTATTGCTCTAAATGCATAATATAACTTGCTGCCAG CTX 124.00 LQ 0 other ,,, NM_004245,NM_004245,NM_201631,NM_201631 ,,, ,,, ,,, ,,, ,,, ,,, NM_001286702,NM_018120,NM_001286702,NM_018120 ,,, ,,, ,,, ,,, 543,849,543,849 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001286702,NM_018120;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 POLA1 chrX 24806451 - intron FOXP2 chr7 114331994 + 5utr > 6 0 140 135 0.830 0.000 124 0 0.180 0.000 142 130 128 173 TGGAACAGATATGCTGGAGGAGCAGATCACTGCTTTTGAGGACTATGTGCAGTCCATGGATGTGGCTGCTTTCAACAAGATCTAAAATCCATCCTGGATCATGGCATTTAAATAAAAGATTGAAAGATTAAAAAAAAAAAAAAAAAGAAAAACATTAGAACAATTATGGCAGATTGCATGAAACGTGAGAACGTCACAGTAACTGCTACTTTTCATTATGTTTGTCTTTGGGTCATGATCAACGAACCGGAAGTTTACAATATG CTX 124.00 LQ 0 other ,,, NM_016937,NM_016937,NM_016937,NM_016937 ,,, ,,, ,,, ,,, ,,, ,,, NM_001172766,NM_014491,NM_148898,NM_148900 ,,, ,,, ,,, ,,, 2145,2148,2223,2199 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001172766,NM_014491,NM_148898,NM_148900;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 POLR2L chr11 840252 - 3utr SRSF11 chr1 70717980 - intergenic > 6 0 355 80 0.020 0.000 123 1 0.050 0.000 356 366 1566 167 CCGGGCCGGGCAGTCTGGGACGCGCCGCCGCCATGATCATCCCTGTACGCTGCTTCACTTGTGGCAAGATCGTCGGCAACAAGTGGGAGGCTTACCTGGGGCTGCTGCAGGCCGAGTACACCGAGGGGGATGCGCTGGATGCCCTGGGCCTGAAGCGCTACTGCTGCCGCCGGATGCTGCTGGCCCACGTGGACCTGATCGAGAAGCTGCTCAATTATGCACCCCTGGAGAAGTGACCACGCTGGAACCCACCCACCCGCTGTGCTGACCATGGGCCCTGAGCGTCCTGCCCCGAATTCACGAGGCTGAGGCATCCGGGAGCTGGCGTAATGCCTGGCCGCAGTGTGTGTGTATCCCATACCCCATAGATATAGGTGGGATTTGTTTATACTAAAGTTCATTGCTTTATCCAACCCCATTCCCACACAAAAAATAAGCAATAAAA CTX 123.00 LQ 2 other 0,0 NM_021128,NM_021128 , , , , , , NM_001190987,NM_004768 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 LDHA chr11 18429383 + 3utr NCOR2,MIR6880 chr12 124846789 - coding > 4 0 135 79 0.750 0.000 120 1 0.150 0.000 136 149 3818 4 TCATGTCTTCTGCATAATTCTTCCAAACGATCTTATTTTTTGAACTATATCAAAACTCTACATTACCATAAAATGTAAAAAGATCTACATACAAACCATTCAACCAACTATCCAAGTGTTATACCAACTAAAACCCCCAATAAACCTTGCTCCCCCAGCCCCACCGCCACCGCAAAACCTGCAGCCGGAGAGCGACGCCCCTCAGCAGCCTGGCAGCAGCCCCCGGG CTX 120.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001135239,NM_001165414,NM_001165415,NM_001165416,NM_005566,NM_001135239,NM_001165414,NM_001165415,NM_001165416,NM_005566,NM_001135239,NM_001165414,NM_001165415,NM_001165416,NM_005566,,, ,,,,,,,,,,,,,,,,, 7,8,7,7,8,7,8,7,7,8,7,8,7,7,8,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,, NM_001077261,NM_001077261,NM_001077261,NM_001077261,NM_001077261,NM_001206654,NM_001206654,NM_001206654,NM_001206654,NM_001206654,NM_006312,NM_006312,NM_006312,NM_006312,NM_006312,NM_001077261,NM_001206654,NM_006312 977,977,977,977,977,977,977,977,977,977,995,995,995,995,995,977,977,995 23,23,23,23,23,23,23,23,23,23,24,24,24,24,24,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 2929,2929,2929,2929,2929,2929,2929,2929,2929,2929,2983,2983,2983,2983,2983,2929,2929,2983 7377,7377,7377,7377,7377,7515,7515,7515,7515,7515,7545,7545,7545,7545,7545,7377,7515,7545 49,49,49,49,49,49,49,49,49,49,49,49,49,49,49,,, ,,,,,,,,,,,,,,,,, HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,HVFCIILPNDLIF*TISKLYITIKCKKIYIQTIQPTIQVLYQLKPPINLAPPAPPPPQNLQPESDAPQQPGSSPR,,, LDHA:NM_001135239[1,7]-NCOR2:NM_001077261[23,48];LDHA:NM_001165414[1,8]-NCOR2:NM_001077261[23,48];LDHA:NM_001165415[1,7]-NCOR2:NM_001077261[23,48];LDHA:NM_001165416[1,7]-NCOR2:NM_001077261[23,48];LDHA:NM_005566[1,8]-NCOR2:NM_001077261[23,48];LDHA:NM_001135239[1,7]-NCOR2:NM_001206654[23,48];LDHA:NM_001165414[1,8]-NCOR2:NM_001206654[23,48];LDHA:NM_001165415[1,7]-NCOR2:NM_001206654[23,48];LDHA:NM_001165416[1,7]-NCOR2:NM_001206654[23,48];LDHA:NM_005566[1,8]-NCOR2:NM_001206654[23,48];LDHA:NM_001135239[1,7]-NCOR2:NM_006312[24,49];LDHA:NM_001165414[1,8]-NCOR2:NM_006312[24,49];LDHA:NM_001165415[1,7]-NCOR2:NM_006312[24,49];LDHA:NM_001165416[1,7]-NCOR2:NM_006312[24,49];LDHA:NM_005566[1,8]-NCOR2:NM_006312[24,49];;; geneB_transcripts=NM_001077261,NM_001206654,NM_006312 ,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,, MV4_11_RNAseq_1 COX8A chr11 63743927 + 3utr RBM28 chr7 127950539 - 3utr > 3 0 145 77 0.060 0.000 120 1 0.060 0.000 152 164 2204 90 CGATCTGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCTCCCCTGGATCATGTCATTCAATTCCAGTCACCTCTTCTGCAATCATGACCTCTTGATGTCCAAAAAAGCATTCTGGAGTGCTGAATTTTTAAGATGTATATTTTGTTAAGCATATTCTCTAAATGAGATATTGTGTGGCCGAGTGTAA CTX 120.00 LQ 2 other , NM_004074,NM_004074 , , , , , , NM_001166135,NM_018077 , , , , 1857,2280 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001166135,NM_018077;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TSPAN9 chr12 3320759 - intron SERBP1 chr1 67875025 - 3utr > 9 0 348 241 0.810 0.000 120 0 0.940 0.080 349 340 51 244 GTGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAATGTAGGCAGCCCAGCATAAGATACCGCCTTTCACAGAAATGTTTGCTGACCCCGGAACTGTCACTCTCGGGTTACAAGAGTTTGTTTCTTTGAAACAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC CTX 120.00 LQ 0 other ,,,,,,, NM_001168320,NM_001168320,NM_001168320,NM_001168320,NM_006675,NM_006675,NM_006675,NM_006675 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001018067,NM_001018068,NM_001018069,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 1227,1209,1182,1164,1227,1209,1182,1164 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001018067,NM_001018068,NM_001018069,NM_015640;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 LOC643339 chr12 93477051 - intron LBR chr1 225590942 - 3utr > 5 0 423 81 0.800 0.000 119 1 1.000 0.000 424 428 9 402 GCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCCAAGTGGAGGAAGAAGCGAATGCGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTGGTCCTCTGCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATATAATAAATCACCTCTTCCGCTGTTTTAGCTGAAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGAAACTTTCTTTTGTTGCACTGACAGGGTCTGTACTTTTTTTTTTCTTTTTGAGTCAGGACTATGGAGCCG CTX 119.00 LQ 0 other , , , , , , , , NM_002296,NM_194442 , , , , 1848,1848 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002296,NM_194442;geneb_utr_codons=13 , , MV4_11_RNAseq_1 ZZZ3 chr1 78036187 + intron BAG4 chr8 38066754 + coding > 3 0 181 199 0.000 0.000 118 0 0.060 0.000 182 174 80 80 CTCGATCTCCTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATACCACACCTGGCCTATCCTCAGTTATTCACTCTGTCTTATATCGAATGTAACAAATCCTGTCATTTCTTAATACTTTCTACAATCGCTTTCAAATCGGTCCTCTAGTATCCACCCCCTTCACCCCCAGTCCAGCAGCCCAAGGATTCTTCATACCCCTATAGCCAATCAGATCAAAGCATGAACCGGCACAACTTTCCTTGCAGTGTCCATCAGTACGAATCCTCGGGGACAGTGAACAATGATGATTCAGATCTTTTGGATTCCCAAGTCCAGTATAGTGCTGAGCCTCAGCTGTATGGTAATGCCAC CTX 118.00 LQ 2 NLoss 0,0,3,3 NM_015534,NM_015534,, ,,, 12,12,, ,,, ,,, ,,, ,,, NM_001204878,NM_004874,NM_001204878,NM_004874 250,286,250,286 3,4,, blat,blat,blat,blat 749,857,749,857 1266,1374,1266,1374 58,58,, ,,, SIS*PRDLPASASQSAGITGIPHLAYPQLFTLSYIECNKSCHFLILSTIAFKSVL*YPPPSPPVQQPKDSSYPYSQSDQSMNRHNFPCSVHQYESSGTVNNDDSDLLDSQVQYSAEPQLYGNA,SIS*PRDLPASASQSAGITGIPHLAYPQLFTLSYIECNKSCHFLILSTIAFKSVL*YPPPSPPVQQPKDSSYPYSQSDQSMNRHNFPCSVHQYESSGTVNNDDSDLLDSQVQYSAEPQLYGNA,, ZZZ3:NM_015534[1,12]-BAG4:NM_001204878[3,4];ZZZ3:NM_015534[1,12]-BAG4:NM_004874[4,5];; geneB_transcripts=NM_001204878,NM_004874 ,,, 1,1,, MV4_11_RNAseq_1 DDX17 chr22 38879443 - 3utr TMBIM6 chr12 50158494 + 3utr > 4 0 157 80 0.000 0.000 118 0 1.000 0.000 158 159 12 1269 TCCTGTTGCATTAAGACTTGAAAGACTTGTAGATGTGTGATGTTCAGGCACAGGATGCTGAAAGCTATGTTACTATTCTTAGTTTGTAAATTGTCCTTTTGATACCATCATCTTGTTTTCTTTTTGTAGGTATAAATAAAAACACTGTTGACAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAACACCTACTTTTAAAGAAAATACCTAACAGATTTTTAATATAGTTATCTCTACC CTX 118.00 LQ 0 other ,,,,, NM_001098504,NM_001098504,NM_006386,NM_006386,NM_006855,NM_006855 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001098576,NM_003217,NM_001098576,NM_003217,NM_001098576,NM_003217 ,,,,, ,,,,, ,,,,, ,,,,, 888,714,888,714,888,714 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001098576,NM_003217;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 MAP3K13 chr3 185136176 + intron MAPKAPK3 chr3 50649536 + 5utr > 4 0 142 83 0.500 0.000 117 1 0.050 0.000 143 147 224 4 TTTGATATCATCCCAGGCTGTATGTTTCTTAAGGCGCAAAACAGCTGCCGTGGTCTTATTATAGCCTACAACTTTATCTTCAACTACCAAAGGAAGTTCAGGAACTTCCTCAATACGATGACCTTTAGACATGACCAGTGCTGGTAGGGCTGAAGCTACCCAGAGGGGCAGGGAGTACTTGCTGCATTTGATCCTCTACAACTGGTGTTGCTCCCGTTATGCGGACAGA INS 117.00 LQ 0 other 0,0,0,0 NM_001242314,NM_001242317,NM_004721, ,,, 2,2,1, ,,, ,39,, ,,, ,,, NM_001243926,NM_001243926,NM_001243926,NM_001243926 -132,-132,-132,-132 1,1,1, tuple,tuple,tuple,tuple ,,, 1149,1149,1149,1149 51,51,51, ,,, *YHPRLYVS*GAKQLPWSYYSLQLYLQLPKEVQELPQYDDL*T*PVLVGLKLPRGAGSTCCI*SSTTGVAPVMRT,*YHPRLYVS*GAKQLPWSYYSLQLYLQLPKEVQELPQYDDL*T*PVLVGLKLPRGAGSTCCI*SSTTGVAPVMRT,*YHPRLYVS*GAKQLPWSYYSLQLYLQLPKEVQELPQYDDL*T*PVLVGLKLPRGAGSTCCI*SSTTGVAPVMRT, MAP3K13:NM_001242314[1,2]-MAPKAPK3:NM_001243926[1,13];MAP3K13:NM_001242317[1,2]-MAPKAPK3:NM_001243926[1,13];MAP3K13:NM_004721[1,1]-MAPKAPK3:NM_001243926[1,13]; geneB_transcripts=NM_001243926;geneb_utr_codons=13 ,,, 2,2,2, MV4_11_RNAseq_1 TSPAN9 chr12 3321075 + intron EIF3A chr10 120801760 - coding > 4 1 290 94 0.920 0.000 112 57 0.060 0.010 292 295 1083 741 CGTGTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTGCTTTTCCTCCTGTAGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGGCTAAAGACCGTGGTGATTTTATAGCATCCTGGGCATTTCACATCCATGAAGTAGGAATTGGGGCTCTGCACCAGGCGTTTCTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCGAGAGGCATGGATGATGACCGGGGTCCCAGGCGAGGCATGGATGATGACCGGGGTCCCAGGCGAGGGTTGGATGATGATCGAGGACCTTGGAGGAA CTX 116.56 LQ 0 NLoss 0,0,3 NM_001168320,NM_006675, ,, 2,3, ,, 63,63, ,, ,, NM_003750,NM_003750,NM_003750 1091,1091,1091 19,19, tuple,tuple,tuple 3272,3272,3272 4149,4149,4149 97,97, ,, CLLRWFPTHLDSECF*CCFLLKEHPSVSLAFPPVGWQRTVEQPTHKTTVCAWLKTVVIL*HPGHFTSMK*ELGLCTRRFFLCFLFSSSGEG*RRSFARGMDDDRGPRRGMDDDRGPRRGLDDDRGPWR,CLLRWFPTHLDSECF*CCFLLKEHPSVSLAFPPVGWQRTVEQPTHKTTVCAWLKTVVIL*HPGHFTSMK*ELGLCTRRFFLCFLFSSSGEG*RRSFARGMDDDRGPRRGMDDDRGPRRGLDDDRGPWR, TSPAN9:NM_001168320[1,2]-EIF3A:NM_003750[19,22];TSPAN9:NM_006675[1,3]-EIF3A:NM_003750[19,22]; geneB_transcripts=NM_003750;geneB_expanded_tuple_required=RGMDDDRGPRRGM ,, 2,2, MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr CSNK1A1 chr5 148872682 - intergenic > 26 0 79 74 0.000 0.000 192 1 0.080 0.000 80 78 21481 55 ATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTTGAGACAGCCTGGGCGTTGCAGTGAGACTCCGTCTCAACAACAACAAAAAGGTGGATACATGTCAAAAGGGCACAGGAG CTX 116.45 LQ 1 other 0,0,0,0 NM_000239,NM_000239,NM_000239,NM_000239 ,,, ,,, ,,, ,,, ,,, ,,, NM_001271742,NM_001271741,NM_001892,NM_001025105 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 AFF1 chr4 88062191 + 3utr SPN chr16 29681198 + 3utr > 3 0 93 138 0.520 0.000 116 0 1.000 0.070 94 98 3 435 AAAAATGTAATTGTTCATCTTTAAATTCTTTCCTTTTCATAAGAGGATCAAGCTGTAAAAAAACAAAAAAATTAATAAAAATTTCGAAAAATCAAAAAAAAAAAAAAAAGGAGATAGAGCAAGGAACAGTAAGAAAATAGTTGGGTGCAGTGGCTATGCGGTGGCACTATAGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGGCAACATAGACCAGATCGGAAGAGCGTCG CTX 116.00 LQ 1 other ,,, NM_001166693,NM_001166693,NM_005935,NM_005935 ,,, ,,, ,,, ,,, ,,, ,,, NM_001030288,NM_003123,NM_001030288,NM_003123 ,,, ,,, ,,, ,,, 1203,1203,1203,1203 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001030288,NM_003123;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 SEC61G chr7 54819951 - 3utr ZBTB7A chr19 4046447 - 3utr > 2 1 195 96 0.000 0.000 96 20 0.050 0.030 197 215 39 184 AATTGATCCATATTCCTATTAATAACATCATTGTTGGTGGCTGAATACATTTTGGAAGAGAGTTTTTCATCTTAGAGATTGGTGAACAAGTGTGAGGGTGTGAGAAACTCACAGAATACAAATTTGCCTGTATGTTTTGTGGGTTTTTTTTTTTCCTTTCAAGATTTTTTTTATTTCTAAATTAAAGTAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGAGCGAGAGAGAGAGCGAGAGAAAAAACAAAAACAAAAAAAATTCCTAAAAGTCGATTTATTTTTGAACAAAATAAAAAAAAAAAAAAAAAAAAGCGAGCGAGAGAGAGAGCGAGAGAGAG CTX 116.00 LQ 0 other , NM_001012456,NM_014302 , , , , , , NM_015898,NM_015898 , , , , 1755,1755 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015898;geneb_utr_codons=13 , , MV4_11_RNAseq_1 AIMP2 chr7 6063461 + 3utr NFATC3 chr16 68260803 + 3utr > 0 3 143 142 0.000 0.010 0 116 0.000 0.160 143 146 148 166 GTGAATTGCCGTAACTGATTTTAAAGGGTTTAGATTTTAAGAATGGTGCTCTTTCATGCCTATTATCAGTAAGGGGACTTGTATTAGAGTCAGAGTCTTTTTATTTAGGCCAGTTGTCAAGTGTCAATAAAAGCATCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAGAAAAAAATATCCCAAGCCCACACCTATGCCTCAGAAAGTCAGCATGTGTCCTGAAGACGTTCATAGATTTATAGGAAATAAAGCCAAAT CTX 116.00 LQ 0 other ,,,,,,,, NM_001134335,NM_001134335,NM_001134335,NM_006303,NM_006303,NM_006303,NM_014413,NM_014413,NM_014413 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_004555,NM_173163,NM_173165,NM_004555,NM_173163,NM_173165,NM_004555,NM_173163,NM_173165 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, 3207,3198,3228,3207,3198,3228,3207,3198,3228 ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004555,NM_173163,NM_173165;geneb_utr_codons=13 ,,,,,,,, ,,,,,,,, MV4_11_RNAseq_1 NA chr1 97144712 + intergenic PRKCD chr3 53215460 + coding > 3 0 125 124 0.860 0.000 115 0 0.020 0.000 126 137 1180 352 CTTTTTCCAACACTATCCATCGAATGAATCACATCCTCAATGCAGATGATGCCGTATTTACCCAGAGATCGAGCAATCAAAGCGTTATCTGTCAAAGCAATTCGCTTCTTATTGATTTTGCCATAACCACGCTTGTAGATTGCAAACAGTCTATGCGCAGTGAGGACGAGGCCAAGTTCCCAACGATGAACCGCCGCGGAGCCATCAAACAGGCCAAAATCCACTACATCAAGAACCATGAGTTTATCGCCACCTTCTTT CTX 115.00 LQ 0 NLoss 3,3 , , , , , , , NM_006254,NM_212539 126,126 , tuple,tuple 377,377 2031,2031 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_006254,NM_212539 , , MV4_11_RNAseq_1 PTEN chr10 89645064 - intron TBCA chr5 77004135 - coding > 0 5 95 244 0.000 0.670 1 115 0.000 0.010 102 88 253 4824 GCCACAAATTACACAAATAAACAAAATCTTTCTAATATACATTTATACTTCTCCATATATTATAAAATTTGACATTTTAAAGAGGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAGAGCTGAAGACGGTGAAAATTATGACATTAAAAAGCAGGCAGAGATCCTACAAGAATCCAGGATGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCCGCATATTTGGATCTTCAACGGATACTAGAAAATGAAAAAGACTTGGAAGAAGCTGAGGAATATAAAGAAGCACGTTTAGTACTGGATTCAGTGAAGTTAGAAGCCTGAAACTTTTC CTX 115.00 LQ 1 NLoss 0,0,0,3,3,3 NM_000314,NM_000314,NM_000314,,, ,,,,, 1,1,1,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001297738,NM_001297740,NM_004607,NM_001297738,NM_001297740,NM_004607 31,31,31,31,31,31 2,2,2,,, tuple,tuple,tuple,tuple,tuple,tuple 91,91,91,91,91,91 390,240,327,390,240,327 29,29,29,,, ,,,,, ATNYTNKQNLSNIHLYFSIYYKI*HFKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLEA*NF,ATNYTNKQNLSNIHLYFSIYYKI*HFKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLEA*NF,ATNYTNKQNLSNIHLYFSIYYKI*HFKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLEA*NF,,, PTEN:NM_000314[1,1]-TBCA:NM_001297738[2,3];PTEN:NM_000314[1,1]-TBCA:NM_001297740[2,3];PTEN:NM_000314[1,1]-TBCA:NM_004607[2,4];;; geneB_transcripts=NM_001297738,NM_001297740,NM_004607 ,,,,, 0,0,0,,, MV4_11_RNAseq_1 UTP18 chr17 49365490 + coding STRAP chr12 16055927 + 3utr > 0 13 212 165 0.000 0.510 0 115 0.000 0.060 212 221 1761 1520 TTATGTTTGGGATGTGAACTCAAGGAAGTGCCTTAACAGATTTGTTGATGAAGGCAGTTTATATGGATTAAGCATTGCCACATCTAGGAATGGACAGTATGTTGCTTGTGGTTCTAATTGTGGAGTGGTAAATATATACAATCAAGATTCTTGTCTCCAAGAAACAAACCCAAAGCCAATAAAAGCTATAATGAACTTGGTTACAGGTGTTAATCATATGTTGCAGTTAGTATACAACTGACTAAAACAAGCAAGCAGAGAAAAGCATCAGCCTTCCAGAGTTACTGTCTGCTTAAGGCAGAAACAGCAGTAAATAATGAGGAAAATGAATTAGCTCCAGTGCTGGAACAACTAACTAACTTGGTGTTACCTGTAAGTGAAAACTC CTX 115.00 LQ 0 CLoss NM_016001 1429 NM_007178 1053 geneB_no_inframe_contig_found geneB_transcripts=NM_007178;geneb_utr_codons=13 MV4_11_RNAseq_1 HSP90AA1 chr14 102548088 - coding NA chr15 60061094 + intergenic > 0 5 94 72 0.470 0.970 0 214 0.000 0.010 99 98 9083 1748 ACAGGATGATCAAACTTGGTCTGGGTATTGATGAAGATGACCCTACTGCTGATGATACCAGTGCTGCTGTAACTGAAGAAATGCCACCTATGACTTGAAAGAAGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCTAATCTATTTATCATCTAAATGAGGTATTGGTTAGAAAAGTATAAATGTTGAAGAAGCCCTGGTGGGCGTTGTGGA CTX 113.42 LQ 1 CLoss , NM_001017963,NM_005348 , , , 2526,2160 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 INHBA-AS1 chr7 41775302 + intron NA chr7 41911606 + intergenic > 12 1 38 144 0.000 0.000 1117 6 0.130 0.010 38 38 190 84 AGGTCTGATCCACGGTGCTAAGGATCTGAAGTGTGAACTCACAGTGAAGGACCCTGAGAGGGCAGAGCCATGTGATGGAATGAGCCATGATCCCTGAGTCCTCACCTCAGGGAGAGATGTGCAGAAGAGCCACCCAAGTGGTGATGTGCTGGTAAACATTTAGTGACCCATTTGAGGTGTG DEL 111.70 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 INHBA-AS1 chr7 41775312 + intron NA chr7 41911606 + intergenic > 12 1 38 144 0.000 0.000 1117 6 0.130 0.010 38 38 184 84 AGGTCTGATCCACGGTGCTAAGGATCTGAAGTGTGAACTCACAGTGAAGGACCCTGAGAGGGCAGAGCCATGTGATGGAATGAGCCATGATCCCTGAGTCCTCACCTCAGGGAGAGATGTGCAGAAGAGCCACCCAAGTGGTGATGTGCTGGTAAACATTTAGTGACCCATTTGAGGTGTG DEL 111.70 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 ESD chr13 47358421 + coding CHMP5 chr9 33271149 + coding ? 0 7 90 140 0.000 0.670 1 219 0.000 0.010 90 92 1101 1046 CCAGCACCAGTGCCAAAGTCCCAGCTCTCATCTTCACCTTTAATATTGCAGCCACGAGGGCTGGTATCTGGAGCAATGACAACAAGACCACGGTTGATGCTATGAAACTGGGAGTAAAGGAAATGAAGAAGGCATACAAGCAAGTGAAGATCGACCAGATTGAGGATTTACAAGACCAGCTAGAGGATATGATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCACAG CTX 109.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NBEAL1 chr2 204055846 + intron KHNYN chr14 24910369 + 3utr > 4 0 150 81 0.960 0.000 108 1 0.030 0.000 151 157 648 419 TCAGAACAGACAGGCCCAGATTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACATTAAACACAGTGGGAATATCACTTTTGATGAGATTGTCAACATTGCTCGACAGATGAACTTGGGTACCAGGCGCCTGAATTTTAATCAGCTCCCTCATTTATTAACTCTCTGACTTGATGCAAGTTACTTAACCTCA CTX 108.00 LQ 0 other ,,,,, NM_001114132,NM_001114132,NM_001114132,NM_001114132,NM_001114132,NM_001114132 ,,,,, ,,,,, ,,,,, 6834,6834,6834,6834,6834,6834 ,,,,, ,,,,, NM_001290256,NM_001290257,NM_001290292,NM_001290293,NM_015299,NM_020195 ,,,,, ,,,,, ,,,,, ,,,,, 2160,2037,,,2037, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001290256,NM_001290257,NM_001290292,NM_001290293,NM_015299,NM_020195;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001290292;geneB_transcript_strand_disagree=NM_001290293;geneB_transcript_strand_disagree=NM_020195 ,,,,, ,,,,, MV4_11_RNAseq_1 POLR1E chr9 37503595 + 3utr MBNL1 chr3 152183256 + 3utr > 3 0 145 145 0.050 0.000 105 0 0.010 0.000 146 148 385 6053 CTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGACGATTACTTGAGCTTGGGAAATCAAGGTTGCAGTGAGCTATGATTGTGTGGCCACACTCCATCCTGGGTCACAGAGTGAGACCTTGTCTCAAAAAAGTAACATAAGGAAAAAAGAAGCACTCAAAAATGCAAAATGTGATAATGGGCACTTGTTTAAAAGAATTAGTGTATCCAGCCTTCACTCCAGCTGGTTAAAAATGTTGCACTTATCAGCAACCATACCACTTTCATCTGCTGAAAGGAAAAATGTGCTTGGTTT CTX 105.00 LQ 2 other ,,,,,,,,,,,,, NM_001282766,NM_001282766,NM_001282766,NM_001282766,NM_001282766,NM_001282766,NM_001282766,NM_022490,NM_022490,NM_022490,NM_022490,NM_022490,NM_022490,NM_022490 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, NM_021038,NM_207292,NM_207293,NM_207294,NM_207295,NM_207296,NM_207297,NM_021038,NM_207292,NM_207293,NM_207294,NM_207295,NM_207296,NM_207297 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, 1149,1113,1167,909,945,1023,1029,1149,1113,1167,909,945,1023,1029 ,,,,,,,,,,,,, ,,,,,,,,,,,,, ,,,,,,,,,,,,, ;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_021038,NM_207292,NM_207293,NM_207294,NM_207295,NM_207296,NM_207297;geneb_utr_codons=13 ,,,,,,,,,,,,, ,,,,,,,,,,,,, MV4_11_RNAseq_1 LRCH4,ZASP chr7 100178173 - intron CREB3L2 chr7 137560502 - 3utr > 4 0 131 74 0.000 0.000 172 0 0.020 0.000 132 127 397 139 GTCGTGTGTGTCTGTGCATGTGTATGTGTGTTTGTGTCTGTGTGTGTCTTTGTGTGTGTGTTTGTGTTTATGTCTGTTGTGTGTGTTTAGGTCTGTGTTGTGTGTGTTGTATGTGTTGTGTGTGTTAGGGTGACTCTTTACCACAGGATGAATAAAGAACTAAGTAATATGGGAATGCAGCAATTTCTGGACTAGCTGAG INS 104.32 LQ 2 other , NM_001289934,NM_002319 , , , 598,598 , , NM_194071,NM_194071 , , , , 1563,1563 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_194071;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HERPUD1 chr16 56977304 - 3utr NUP50 chr22 45583048 + 3utr ? 0 8 84 141 0.000 0.490 1 208 0.000 0.080 84 86 391 371 TTTTTGTTCACCAATTTGTATCACGGCTTCACGTTTCTGCTTTTGCTTGCTCACAAAAGCATATCATCATCCACACTGTTTTTTTTTTTTTTTTTTTTAAACCTGTGTATCCATCTCATCCTTTTGCGCATTCCTAGTAAGCAAAAAAATTTGTTATGCCATTTTCATTATTTTATTTACAGACTGAAAAAATATGGCCAGTTTTTAAATAAGTTTAGATTATGTTT CTX 104.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 KLRB1 chr12 9720140 - intergenic LOC101930452 chr12 9558904 + intergenic > 0 5 130 144 0.660 0.930 1 304 0.010 0.440 134 134 0 74 GCGGTTATGACCGTTAACCTGGAAAATCTCACTGGATCCTTCACTGGAGGACTGTGGGTTTTAGGTGTCCAAGAAGAAAGCTCAGATCTGCCGACGGCAGGTGCCTTACTTGGGATTTACTATCCGACAGGGGTCTGGAGGACTGTGGGTTTTAGGTGTCCAAGAAGAAAGCTCAGATCTTCCAGCAGAAGGTACCTTACTTGGGATTTACTATCCGACAGGGGTCTGAACGCAGCTCGGGATCAGAAAAAAAGCAGGTCATTTGCAATGTACCGGAG ITX 103.43 LQ 0 other 0 NM_002258 geneB_no_transcripts MV4_11_RNAseq_1 STEAP1B chr7 22549926 - intergenic TAX1BP1 chr7 27868491 + 3utr > 3 5 81 222 0.930 0.000 98 70 1.000 0.010 82 82 153 699 AGTAATTTTTAATGGAAAAAACTTAACCAAAAATTTGTCACAGAATTTTGAGACCCATTAAAAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG ITX 102.90 LQ 2 other 0,0,0,0,0,0,0,0 NM_001164460,NM_001164460,NM_001164460,NM_001164460,NM_207342,NM_207342,NM_207342,NM_207342 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001079864,NM_001206901,NM_001206902,NM_006024,NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 2244,2244,1773,2370,2244,2244,1773,2370 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 GNMT chr6 42924124 - intergenic SPATA24 chr5 138737692 - coding > 3 0 143 88 0.860 0.000 102 1 0.080 0.000 147 143 104 60 TCTAATTCAAAAGAAAAGAACCCGCCGAGCAGTCAAATTCCAGAGGGCCATTACTGGTGCATCTCTTGCTGATATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGAAAGGCTCAACGAGAACAAGCTATCAGGGCTGCTAAGGAAGCAGAGAAGTTACAGTTTGCCCTCGGAGAGGTAGAGGTGCTATCCAAGCAGCTGGAGAAAGAGAAGCTGCCCTTTGAAAAAGCGCG CTX 102.00 LQ 0 NLoss 0 NM_018960 NM_194296 226 618 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_194296 geneB_transcripts=NM_194296 MV4_11_RNAseq_1 RAB3GAP2 chr1 220427328 - intron SERPINB6 chr6 2948629 - coding > 4 0 327 103 0.500 0.000 101 0 0.060 0.000 328 338 320 1067 GGATGATCTGCAAGAATTTCAGCATACTGTGGTCTCTCAAATTTATAGAGTAGCTGGGTACCCAACATTACGTTGAAGTATTCTTTTATCCCTGCCACAACTTCATTAACCGCATACTCCTTATTATCTGTGTTTCCACGAGATTTCTTGTAAGTTGCATAAACCTCAAGAATGGAATCCACATTCTTATTAGCAGGAAGATAAAAGAGCTGTTTTTGCCTGGTAATTAAGTCCCAGTCATCAACAAGCCACGGTTTTAGCTCTTCAGGAATCTTTACTTTAACTTCAACTCTGTTCATGAATGTTTCCTCATTTTCAACAGTAGGATCTACCCGAGTCGTCCCCCGCTTCTGCGCCGACCACCCCTTCCTTTTCTTCATCCAGCACAGCAAGACCAACGGGATTCTCTTCTGCGGCCGCTTTTCCTCTCCGTGAGGCCAG CTX 101.00 LQ 0 NLoss 0,0,0,0,0,0,0,0,3,3,3,3,3,3,3,3 NM_012414,NM_012414,NM_012414,NM_012414,NM_012414,NM_012414,NM_012414,NM_012414,,,,,,,, ,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,,,,,,,, ,,,,,,,,,,,,,,, 115,115,115,115,115,115,115,115,,,,,,,, ,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,, NM_001195291,NM_001271822,NM_001271823,NM_001271824,NM_001271825,NM_001297699,NM_001297700,NM_004568,NM_001195291,NM_001271822,NM_001271823,NM_001271824,NM_001271825,NM_001297699,NM_001297700,NM_004568 349,359,364,345,345,345,345,345,349,359,364,345,345,345,345,345 8,7,7,7,7,7,7,7,,,,,,,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 1046,1076,1091,1034,1034,1034,1034,1034,1046,1076,1091,1034,1034,1034,1034,1034 1143,1173,1188,1131,1131,1131,1131,1131,1143,1173,1188,1131,1131,1131,1131,1131 111,111,111,111,111,111,111,111,,,,,,,, ,,,,,,,,,,,,,,, G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,G*SARISAYCGLSNL*SSWVPNITLKYSFIPATTSLTAYSLLSVFPRDFL*VA*TSRMESTFLLAGR*KSCFCLVIKSQSSTSHGFSSSGIFTLTSTLFMNVSSFSTVGSTRVVPRFCADHPFLFFIQHSKTNGILFCGRFSSP*GQ,,,,,,,, RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001195291[8,8];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001271822[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001271823[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001271824[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001271825[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001297699[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_001297700[7,7];RAB3GAP2:NM_012414[1,1]-SERPINB6:NM_004568[7,7];;;;;;;; geneB_transcripts=NM_001195291,NM_001271822,NM_001271823,NM_001271824,NM_001271825,NM_001297699,NM_001297700,NM_004568 ,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,,,,,,,, MV4_11_RNAseq_1 RAB3GAP2 chr1 220428041 - intron LSM7 chr19 2328465 - coding > 4 3 183 150 0.670 0.000 61 119 0.220 0.180 184 175 51 3842 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 100.27 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 6,6 2, blat,blat 18,18 312,312 60, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREVES*RASTHSSTLCWTAPLSTCETL, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 CRSP8P chr5 79654851 + intergenic KTN1 chr14 56122761 + coding > 3 0 224 155 0.980 0.000 100 0 0.300 0.000 225 231 179 329 GCAAAAAAAAAATCTACATTAAAACCCTTTGTTGGAATGCTTTACACTTTCCACAGAACAGAAACTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTCGAGTTTTTTGCCCATACACATGAGTATTTGTCTAAAACATGTCTTCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGCTTCCCTGTCACTTGAAAGAAAAGGAAAATGAATTGAAGAGGTTAGAAGCCATGCTAAAAGAGAGGGAGAGTGATCTTTCTAGCAAAACACAGCTGTTACAGGATGTACAAGATGAAAACAAATTGTTTAAGTCCCAAATTGAGCAGCTTAAACAACAAAACTACCA CTX 100.00 LQ 2 NLoss 3,3,3,3 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001079521,NM_001079522,NM_001271014,NM_004986 935,912,935,935 ,,, tuple,tuple,tuple,tuple 2803,2734,2803,2803 4074,3921,3990,3903 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001079521,NM_001079522,NM_001271014,NM_004986 ,,, ,,, MV4_11_RNAseq_1 NA chr21 20230806 + intergenic PRR11 chr17 57282435 + 3utr > 9 0 70 246 0.980 0.500 199 0 1.000 0.040 71 70 17 267 TTGTTCCCTCCCATGCCTAGCTGGATTGCAGAGTTAAGTTTATGATTATGAAATAAAAACTAAATAAAAAAAAAAAAAAAAGTCCTGTGGAAATCATATAGACAAACATTTGCAAAGCTGCTACTGCCATTGTACCAGTGTTAAACTGTGTTCTACCTTGCATCTTTTACTGATTTTTATGACAGATTTTATATTGTAACCATTCGAGAACTCTGTAAGTGCTATGGCTTCCTTAAACTACGATTTATCATATGCTCCCGGTGTTTACTTTGAGACTGAATGGCAACCAGAGAATGTAAACAACCAAGGTGCATCA CTX 99.50 LQ 0 other NM_018304 1083 geneB_no_inframe_contig_found geneB_transcripts=NM_018304;geneb_utr_codons=13 MV4_11_RNAseq_1 CDKN2A chr9 21968130 + 3utr SNRPB chr20 2451415 - 5utr ? 0 7 77 329 0.000 0.030 0 198 0.000 0.330 77 82 1417 2479 GGGGAAGGCATATATCTACGTTAAAAGGCAGGACATTTTTAAAAGCTCTATTTTCTAAATGAAAACTACGAAAGCGGCGGCGGGAAATCGGCTGTGGGAGAGAGGCTAGGCCTCTGAGGAGGCGAATCCGGCGGGTATCAGAGCCATCAGAACCGCCACCATGACGGTGGGCAAGAGCAGCAAGATGCTGCAGCATATTGATTACAGGATGAGGTGCATCCTGCAGGACGGCCGGATCTTCATTGGCACCTTCAAGGCTTTTGACAAGCACATGAATTTGATCCTCTGTGACTGTGATGAGTTCAGAAAGATCAAGCCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAGCGAGTCCTCGGTCTGGTGCTGCTGCGAGGGGAGAATCTGGTCTCAATGACAGTAGAGGGC CTX 99.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 VAV1 chr19 6857372 + 3utr POMZP3 chr7 76253782 - intron > 0 3 171 102 0.000 0.480 0 98 1.000 0.090 171 173 13 85 CTCCCGGCGGGTGGAGACTTTGGGATGGACTGGAGGAGGCCAGCGTCCAGCTGGCGGTGCTCCCGGGATGTGCCCTGACATGGTTAATTTATAACACCCCGATTTCCTCTTGGGTCCCCTCAAGCAGACGGGGCTCAAGGGGGTTACATTTAATAAAAGGATGAAGATGGAAAAAAAAAAAAAAAATTCCTTATGTGGTTTGTAAAATAACCTAATGAAAATGGAATAGTTTTCTAATTACAGAAAGAAAAGAAGTTGAAGTGGGTTTCGCCATG CTX 98.00 LQ 1 other ,,,,, NM_001258206,NM_001258206,NM_001258207,NM_001258207,NM_005428,NM_005428 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_012230,NM_152992,NM_012230,NM_152992,NM_012230,NM_152992 ,,,,, ,,,,, ,,,,, 227,227,227,227,227,227 564,348,564,348,564,348 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_012230,NM_152992 ,,,,, ,,,,, MV4_11_RNAseq_1 TMBIM6 chr12 50158508 + 3utr EME1 chr17 48452205 + intron > 1 2 339 80 0.000 0.830 13 95 0.010 0.020 340 339 1258 42 CCAGGTTCACAGTGCACCATGTCACTGTGCTATCCTACGAAATCATTTGTTTCTAAGTTGTGTTTATTCCTGGAGTGACATGCCACCCCGAATGGCTCACTTTCACTGAGGATGCTGTCCTCTGATTTAGCTGCTGCCTCCAGCCTCTGGCTTGAGAACTTACTAAAGGCACTTCCTTCCTGTTAAACCCCTGTTAACTCTCCATAAATTTGGTGATTCTCTGCTAGGCCTAAGATTTTGAGTTAACATCTCTTGAAGCCAAACTCCACCTTCTGTGCTTTTTGCTTGGGATAATGGAGTTTTTCTTTAGAAACAGTGCCAAGAATGACAAGATATTAAAAAAAAAAAAAAAGAACTTTTGACATCTCCATTTCAAACGTGAAGGTAAACAAGGGGTTGGAGGTGTTAAATCTTGTTAC CTX 97.21 LQ 0 other ,,, NM_001098576,NM_001098576,NM_003217,NM_003217 ,,, ,,, ,,, ,,, ,,, ,,, NM_001166131,NM_152463,NM_001166131,NM_152463 ,,, ,,, ,,, ,,, 1752,1713,1752,1713 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001166131,NM_152463;geneb_utr_codons=8 ,,, ,,, MV4_11_RNAseq_1 C12orf79,BTG1 chr12 92537703 - 3utr LRPPRC chr2 44114898 + 3utr ? 3 0 269 145 0.030 0.000 194 0 0.060 0.000 270 280 249 422 CTCAAAACAGCACCAACGTGCAAATGGTAGACAGCCGAATCAGCTGTAAGGAGGAACTTCTCTTGGGCAGAACGAGCCCTTCCAAAAACTACAATATGATGACTGTATCAGGTTAAGATATAGTCTGTGGATGGATCATCTGATGATGATGGATAAATTTGATTTTTGCTTTGGGTGGGCTCCTCTTGGGGATGGATTATGGAATTTAAACCATGTCACAGCTGTGAAGATCTGGCACAAGATAGAATGGTAAAAAAAAAAAAAAATTTTAAGTGACACCTTTTATTTCAAACAATTAAATACAAACCAATATTTTACCCCTTCATAGATGAAATCACATCTTTTCAGGATATGAGTATAAAGTAACAAGCCTAGGGCAGAGCTTGTACTGACAAAGTCCTGAAACTACAATGAGAGGAAACAC CTX 97.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 TRIP13 chr5 917190 + coding NA chrX 114953460 - intergenic > 0 7 139 170 0.000 0.890 0 97 0.000 0.250 139 138 234 74 AGGAAGAGCGAGGGCCTCAGCGGCCGGGTCCTGAGAAAACTCCCCTTTCTGGCTCATGCGCTGTATGTCCAGGCCCCCACCGTCACCATAGAGGGGTTCCTCCAGGCCCTGTCTCTGGCAGTGGACAAGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGATTGTCAATGAGGCAGATCAGATTCCGATTTGACGGGCAACCAATCAATGAAACAGAGATCGGTGGAGCGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAACAGCA CTX 97.00 LQ 0 CLoss NM_004237 1271 geneB_no_transcripts MV4_11_RNAseq_1 MTA2 chr11 62360921 + 3utr HSD17B11 chr4 88312266 - 5utr ? 0 5 94 58 0.000 0.650 1 192 0.000 0.500 94 93 107 353 GCCTGGGGTTGATGCCAGCTTAGGGGCCTCAAACTCCAATTAGGAAAGTCCGGACACCGGACAGAAAGAGAAACCCCCAATTAGGAAAAAAAAAAAAAAAAAAAAAAACACACCAAACGCTCGCAGCCACAAAAGGGATGAAATTTCTTCT CTX 96.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 LOC100288798 chr12 46965195 + 5utr NA chr12 47270358 + intergenic > 13 14 46 134 0.000 0.000 953 247 0.100 0.930 46 46 101 14 ATTGCTGTATGCACATCTGAATCTGTTTACAATTTGAGAATAGAGGATCAAGTTCAGATGGCTTACGGTTGAGATACATGTTGCTATGGCAGCAGGAAGAAAATGATGGAAAAGAAGAAAACAAAAAGCAAGAAAAAGTGAGAAATCAAAGGACAACATTTTCAAGGATGAAGAGTGCT DEL 95.30 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 MYLIP,MIR4639 chr6 16148059 - 3utr HMGN3 chr6 79912106 - coding > 4 2 142 155 0.000 0.510 136 27 0.040 0.010 143 156 301 1235 CTTTACCTTAGCTAGTATTGCACCCGATAAGGTCATCTAGGTCTCCCGACATCCCAGAAAACCTGCTAGCTGACCAGCTTCCAAAATGCCCAAGTGGGAGTGGAAAACATGTTTAAGAAAACAGAAGCAAAAAGAACCAAAAAAAACATCTGCTAAGAAAGAACCTGGAGCAAAGATTAGCAGAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAGGAAGCTGGAAAGGAAGGCACAGAAAACTGAATCTGTAGATAACGAGGGAGAATGAATTGTCATGAAAAATTGGGGTTGATTTTATGTATCTCTTGGAGAT INS 93.64 LQ 0 NLoss 0,0,0,0,0,0,3,0,3,0,3,3 NM_013262,NM_013262,NM_013262,NM_013262,NM_013262,NM_013262,,,,,, ,,,,,,,,,,, 7,7,7,7,7,7,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001201362,NM_001201363,NM_001201363,NM_004242,NM_004242,NM_138730,NM_001201362,NM_001201363,NM_001201363,NM_004242,NM_004242,NM_138730 50,50,50,50,50,50,50,50,50,50,50,50 5,5,5,5,5,5,,,,,, tuple,blat,tuple,blat,tuple,tuple,tuple,blat,tuple,blat,tuple,tuple 148,148,148,148,148,148,148,148,148,148,148,148 288,393,393,300,300,234,288,393,393,300,300,234 52,76,52,76,52,52,,,,,, ,,,,,,,,,,, FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,LP*LVLHPIRSSRSPDIPENLLADQLPKCPSGSGKHV*ENRSKKNQKKHLLRKNLEQRLAEVLKGRRRKSRKLERKAQKTESVDNEGE*IVMKNWG*FYVSLGD,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,LP*LVLHPIRSSRSPDIPENLLADQLPKCPSGSGKHV*ENRSKKNQKKHLLRKNLEQRLAEVLKGRRRKSRKLERKAQKTESVDNEGE*IVMKNWG*FYVSLGD,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,FTLASIAPDKVI*VSRHPRKPAS*PASKMPKWEWKTCLRKQKQKEPKKTSAKKEPGAKISRGAKGKKEEKQEAGKEGTEN*ICR*RGRMNCHEKLGLILCISWR,,,,,, MYLIP:NM_013262[1,7]-HMGN3:NM_001201362[5,5];MYLIP:NM_013262[1,7]-HMGN3:NM_001201363[5,7];MYLIP:NM_013262[1,7]-HMGN3:NM_001201363[5,7];MYLIP:NM_013262[1,7]-HMGN3:NM_004242[5,6];MYLIP:NM_013262[1,7]-HMGN3:NM_004242[5,6];MYLIP:NM_013262[1,7]-HMGN3:NM_138730[5,6];;;;;; ERROR_geneB_multiple_matching_frames=NM_001201363;ERROR_geneB_multiple_matching_frames=NM_004242 geneB_transcripts=NM_001201362,NM_001201363,NM_004242,NM_138730 ,,,,,,,,,,, 1,2,1,2,1,1,,,,,, MV4_11_RNAseq_1 BASP1 chr5 17276951 + 3utr TAX1BP1 chr7 27868484 + 3utr > 1 4 105 223 0.000 0.000 45 48 1.000 0.060 106 103 4 719 AAAAAAAAAAAAAAAAAAAAAAACAAAAAAATGTAAAAGGGATGCATTAAAATTATATGTAATTGTAAAAATGGTGCAACAGTAATAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG CTX 93.00 LQ 2 other ,,,,,,, NM_001271606,NM_001271606,NM_001271606,NM_001271606,NM_006317,NM_006317,NM_006317,NM_006317 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001079864,NM_001206901,NM_001206902,NM_006024,NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 2244,2244,1773,2370,2244,2244,1773,2370 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 ARHGDIB chr12 15095380 + 3utr SLC39A4 chr8 145638946 - coding > 4 1 341 122 0.000 0.750 34 93 0.000 1.000 341 340 8176 253 GGGATGTGACTAGGGACTCATTGGGCCAGCAACAACCACAAAAGAATCTAGGCATTAGAATGAACTACTGGAACCTGAGTCAAAGACCTGTTAGTGATAATTTGCCCATTTTCTGGCCTCTAGTTGCTTGAATAGGGGTAAGACAGGGAAATATTAAATGATTGTGTACTGAGATGGAGACGTGGAAGATCTGGCCCTGATGGAGGATCAGAGGGAGCAGGTTGGGTGAAAGCCCGGTTTTAAGCCTCTTGTTCTAGGGACCACGTTGAGTGACAGGGTGGGAAAAGATGCATCAATAAGGAAATGTGGCAGTGTTGAAGAGGGACCCAGCTGTGGACAGGGAGGAGAGCCCGGAGCTGCTGAACCCTGAGCCCAGGAGACTGAGCCCAGAGTTGAGGCTACTGCCCTATATGATCACTCTGGGCGACGCCGTGCACAACTTCGCCGACGGGCTGGCCGTGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTG CTX 93.00 LQ 0 NLoss 0,0,0,3,3,3 NM_001175,NM_001175,NM_001175,,, ,,,,, 6,6,6,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001280557,NM_017767,NM_130849,NM_001280557,NM_017767,NM_130849 -23,450,475,-23,450,475 1,8,9,,, tuple,blat,blat,tuple,blat,blat ,,,,, 450,,,450,, 115,113,113,,, ,,,,, DVTRDSLGQQQPQKNLGIRMNYWNLSQRPVSDNLPIFWPLVA*IGVRQGNIK*LCTEMETWKIWP*WRIRGSRLGESPVLSLLF*GPR*VTGWEKMHQ*GNVAVLKRDPAVDREESPELLNPEPRRLSPELRLLPYMITLGDAVHNFADGLAVEIGRASCRERV,DVTRDSLGQQQPQKNLGIRMNYWNLSQRPVSDNLPIFWPLVA*IGVRQGNIK*LCTEMETWKIWP*WRIRGSRLGESPVLSLLF*GPR*VTGWEKMHQ*GNVAVLKRDPAVDREESPELLNPEPRRLSPELRLLPYMITLGDAVHNFADGLAVEIGRASCRERV,DVTRDSLGQQQPQKNLGIRMNYWNLSQRPVSDNLPIFWPLVA*IGVRQGNIK*LCTEMETWKIWP*WRIRGSRLGESPVLSLLF*GPR*VTGWEKMHQ*GNVAVLKRDPAVDREESPELLNPEPRRLSPELRLLPYMITLGDAVHNFADGLAVEIGRASCRERV,,, ARHGDIB:NM_001175[1,6]-SLC39A4:NM_001280557[1,4];ARHGDIB:NM_001175[1,6]-SLC39A4:NM_017767[8,11];ARHGDIB:NM_001175[1,6]-SLC39A4:NM_130849[9,12];;; geneB_CDS_mapping_exception=NM_017767:-2;geneB_CDS_mapping_exception=NM_130849:-2 geneB_transcripts=NM_001280557,NM_017767,NM_130849;geneb_utr_codons=13 ,,,,, 2,2,2,,, MV4_11_RNAseq_1 FNDC3B chr3 171830369 + coding GPS1 chr17 80015336 - 3utr > 0 3 76 171 0.000 0.030 1 92 0.000 0.270 76 80 61 600 GACCAAATCCCTCTGGAACTGCCACCATTGCTGAACGGAGAGGTAGCCATGATGCCCCACTTGGTGAATGGAGATGAGTCTGCTCTTTAATGGACACCGCCCACTTGTCTGCACCTGACTGAGGCGGGAACAGGAGGGGTCTGGGAAATGGTGCCACTGGGCCTGGGTGCCGCACAGTCTGCTCCCTGGGGACAGAAACCCACAGGGTCGAGCCCTGCAGGCCTCTCCTTCCAGGAAGGGCCACAACTAGC CTX 92.00 LQ 0 CLoss ,,, NM_001135095,NM_001135095,NM_022763,NM_022763 ,,, ,,, ,,, 100,100,100,100 ,,, ,,, NM_004127,NM_212492,NM_004127,NM_212492 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004127,NM_212492;geneB_transcript_strand_disagree=NM_004127;geneb_utr_codons=5;geneB_transcript_strand_disagree=NM_212492 ,,, ,,, MV4_11_RNAseq_1 SNRPD2 chr19 46190714 - 3utr PTGER4 chr5 40679368 - intergenic > 5 5 368 62 0.490 0.000 89 180 0.330 0.400 368 378 59 17 CTCTGTGCTCACACAGTCAGTCAAGAACAATACCCAAGTGCTCATCAACTGCCGCAACAATAAGAAACTCCTGGGCCGCGTGAAGGCCTTCGATAGGCACTGCAACATGGTGCTGGAGAACGTGAAGGAGATGTGGACTGAGGTACCCAAGAGTGGCAAGGGCAAGAAGAAGTCCAAGCCAGTCAACAAAGACCGCTACATCTCCAAGATGTTCCTGCGCGGGGACTCAGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGGCAAGTAGGGGCCGCCTGTCTGTTGACAGAACTCACTCCTCTGTCCTATGAAGACCGCTGCCATTGGTGTTGAGAATAATAAAGCTCTGTGTTTTTTTCTAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAGAAAGAGGAGGAGACAGTGATTGCAGCCTCTCCCGGCG CTX 91.93 LQ 0 other 0,0 NM_004597,NM_177542 , , , , , , NM_000958,NM_000958 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 POLR2L chr11 840204 - 3utr CEP350 chr1 180082518 + 3utr > 1 2 134 132 0.000 0.010 14 78 0.060 0.100 149 149 172 82 CCAGCCGTGCCGAACATGGGCCCTGAGCGTCCTGCCCCGAATTCACGAGGCTGAGGCATCCGGGAGCTGGCGTAATGCCTGGCCGCAGTGTGTGTGTATCCCATACCCCACTCTGGAAGGAACCATCCAGTAAAGGTCTTTCAGAACCAAAAAAAAAAAAAATACAAGTCATGGAATCAGCAATCTGGTAAGAAATGCTGCCAAGAATGTGGCAGTAGCTGTCCTGACAGACTCCAACTGTCTTTACTATCTGAAGAATCCTAGGCTCCACATGAGAGGCA CTX 91.86 LQ 2 other NM_021128 NM_014810 9354 geneB_no_inframe_contig_found geneB_transcripts=NM_014810;geneb_utr_codons=13 MV4_11_RNAseq_1 RBM14,RBM14-RBM4,RBM4 chr11 66413643 - 3utr PELP1 chr17 4575566 - coding > 0 3 78 126 0.480 0.120 1 175 0.000 0.020 78 77 892 121 GGGAAGCTACAGAAGTATTGAAGGACAGAAGAACAGGAAAATGGGCAGGAGAGGAAAGGAAAGGAAAGGAAGAGAAGGAAGACTTTGAGGAAGAGGAAGAGGATGAAGAGGAATATTTTGAAGAGGAAGAAGAGGAGGAAGAAGAGTTTGAGGAAGAATTTGAGGAAGAAGAAGGTGAGTTAGAGGAAGAAGAAGAAGAGGAG CTX 91.00 LQ 1 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001198843,NM_001198844,NM_001198845,NM_001198846,NM_002896,NM_001198843,NM_001198844,NM_001198845,NM_001198846,NM_002896,, ,,,,,,,,,,, 3,2,3,2,4,3,2,3,2,4,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001278241,NM_001278241,NM_001278241,NM_001278241,NM_001278241,NM_014389,NM_014389,NM_014389,NM_014389,NM_014389,NM_001278241,NM_014389 760,760,760,760,760,957,957,957,957,957,760,957 17,17,17,17,17,16,16,16,16,16,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 2279,2279,2279,2279,2279,2870,2870,2870,2870,2870,2279,2870 2721,2721,2721,2721,2721,3543,3543,3543,3543,3543,2721,3543 22,22,22,22,22,22,22,22,22,22,, ,,,,,,,,,,, EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,, RBM4:NM_001198843[1,3]-PELP1:NM_001278241[17,19];RBM4:NM_001198844[1,2]-PELP1:NM_001278241[17,19];RBM14-RBM4:NM_001198845[1,3]-PELP1:NM_001278241[17,19];RBM14-RBM4:NM_001198846[1,2]-PELP1:NM_001278241[17,19];RBM4:NM_002896[1,4]-PELP1:NM_001278241[17,19];RBM4:NM_001198843[1,3]-PELP1:NM_014389[16,17];RBM4:NM_001198844[1,2]-PELP1:NM_014389[16,17];RBM14-RBM4:NM_001198845[1,3]-PELP1:NM_014389[16,17];RBM14-RBM4:NM_001198846[1,2]-PELP1:NM_014389[16,17];RBM4:NM_002896[1,4]-PELP1:NM_014389[16,17];; geneB_transcripts=NM_001278241,NM_014389 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,, MV4_11_RNAseq_1 GNB2L1 chr5 180663929 - 3utr THUMPD3-AS1 chr3 9431056 - 3utr > 3 1 107 61 0.000 0.000 38 90 0.000 0.060 107 123 42 89 TTGCTGGCTACACGGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACACGCTAGAAGTTTATGGCAGAGCTTTACAAATAAAAAAAAAACTGGCTTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAGGGTTTAAAGCTAGAAAAAAAAAGCTACTGAACTATCTTAAAGGATAAGTTAC CTX 90.00 LQ 0 other NM_006098 geneB_no_transcripts MV4_11_RNAseq_1 GLMN chr1 92759050 + intron TOMM22 chr22 39079921 + 3utr > 3 2 212 134 0.000 0.490 12 83 0.010 0.070 213 209 148 2165 CTTATATACAAAAGACAGTCAATAACAAATGCTGGCAAGGATGTGGAGAAAAGGAAACCCTCATATATTGTCGCGACATGTATTGTCGCGATCTCAGCTCACTGCAAGCTCCACCTCCTGGGTTCACGTCATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGGCTACAGGTGCCCGCCACCACTCCCGGCCAATTTTTTGTATTTTTTTTTTTTTTTTTGGCACATTGATCTATCTAAACCCGGTGGGGAGAATTATCCCCACATTGTCTCATGGAAAGACTAAACTTTGAAGTGTGCCCTCCACACTATCCTTACTTCTTTCTCCACTCTGATACCAGAGTG CTX 89.12 LQ 0 other NM_053274 NM_020243 429 geneB_no_inframe_contig_found geneB_transcripts=NM_020243;geneb_utr_codons=13 MV4_11_RNAseq_1 MIR6723 chr1 568070 + intergenic KHSRP,MIR3940 chr19 6413851 - 3utr > 2 2 203 79 0.500 0.000 18 142 0.420 0.160 203 200 42 916 ATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAAAAAAAAAAAAACTTAAAAATTAAAAACACAAAGAGCAAAGCAGAACTTATAAAATTATATATATATATATTAAAA CTX 89.00 LQ 0 other NM_003685 2136 geneB_no_inframe_contig_found geneB_transcripts=NM_003685;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr6 12514648 + intergenic PAK1IP1 chr6 10702601 + coding > 3 0 170 145 0.910 0.000 88 0 0.030 0.000 171 184 347 479 ATAAAGCGCGCCGACTGGGCTACAAGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGACACAGTGGTACAATAACTTGCCTGAAATTCTATGGCAACAGGCATTTAATCAGTGGAGCGGAAGATGGAATCATCTGTATCTGGGATGCAAAGAAATGGGAATGCCTGAAGTCAATTAAAGCTCACAAAGGACAGGTGACCTTCCTTTCTAT INS 88.00 LQ 0 NLoss 0 NM_017906 83 tuple 248 1179 geneA_no_transcript_IDs_found geneB_transcripts=NM_017906 MV4_11_RNAseq_1 TSPAN9 chr12 3320759 - intron ZBTB7A chr19 4046582 - 3utr > 3 0 108 142 0.910 0.000 88 0 0.940 0.000 109 100 51 227 TTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAAAAAAAGGCAACCAACCACATTAGAAGTCTTGGCACTTTGTAACGGAACGGGTACTACACTTTATCTTAATTCTTAATTTAAAAACATGTTTACAAGTTACAACCAACTTCTATGAAAAGTTGAAAAGACAAAAAAA CTX 88.00 LQ 0 other , NM_001168320,NM_006675 , , , , , , NM_015898,NM_015898 , , , , 1755,1755 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_015898;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chr20 53691527 + intergenic TSPO chr22 43557058 + coding > 1 2 167 400 0.950 0.000 87 15 0.020 0.010 168 182 344 3637 GTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACATTAAACACAGTGGGAATATCACTTTTGATGAGATTGTCAACATTGCTCGACAGATGCCAGCCATGGGGTACGGCTCCTACCTGGTCTGGAAAGAGCTGGGAGGCTTCACAGAGAAGGCTGTGGTTCCCCTGGGCCTCTACACTGGGCAGCTGGCCCTGAACTGGGCATGGCCCCCCATCTTCTTTGGTGCCCGACAAATGGGCTGGGCCTTGGTGGATCTCCTGCTGGTCAGTGGGGCGGCGGCAGCCACTACCGTGGCCTGGTACCAGGTGAGCCCGCTGGCCGCCCGCCTGCTCTACCCCTACCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCGTATGGCGGGACAACCATGGCTGGCGTGGGGGACGGCGGCTGCCAGAGTGAGTGCCCGGCCCACCAGGGACTGCAGCTGCACCAGCAGGTGCCATCACGCTTGTTATGTGGTGGCCGTCACGC CTX 87.75 LQ 2 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_000714,NM_001256530,NM_001256531 61,61,61 ,, tuple,tuple,tuple 183,183,183 510,510,510 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_000714,NM_001256530,NM_001256531 ,, ,, MV4_11_RNAseq_1 MIR3675_locB chr1 17011855 + intergenic PCNP chr3 101295283 + intron > 0 9 84 73 0.500 0.860 0 175 0.000 0.050 85 78 334 485 GGACAAGGCAAATGATTTCTTCAAAACACCCATTTGCTTACTGGAAGTGGTAGGAAAAGCAGCAATGCATGGTTTTTTTTTTTTTAGGTATATAAACTATTTATTAACAGACAAGGCCTACAGACTTATTTCTTCTTGGACACACCCACGG CTX 87.50 LQ 0 other NM_020357 64 537 geneB_no_inframe_contig_found geneB_transcripts=NM_020357 MV4_11_RNAseq_1 CCNA2 chr4 122744779 - 5utr NDUFA1 chrX 119010543 - 3utr ? 0 9 146 145 0.000 0.070 0 175 0.000 0.150 157 168 805 1641 TCTTCCGATCTCGGGCGGGCTGGTAGGCTGGCCTGGGCTGCGACCGGCGGCTACGACTATTCTTTGGCCGGGTCGGTGCGAGTGGTCGGCTGGGCAGAGTGCACGCTGCTTGGCGCCGCAGGCTGATCCCGCCGTCCACTCCCGGGAGCAGTGATGTCAGGGGTAGATGGCCATAACTGAGTTATTTTTTTCATCAATCAGGAAAATGCTTCCTTAATCAATGTTCTCCAAACCCTTTGACACATAGTAACGATCAACTCCAGAGATGCGCCTATCTCTTTCCATCAGACTCCAGTGATACCCAAAATGAGCACCCCAGATCGGAA CTX 87.50 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 RNF169 chr11 74457227 + intergenic MIR6723 chr1 564801 - intergenic > 5 0 142 77 0.830 0.500 174 0 1.000 0.000 148 152 12 117 GACGCATGAGGGCAGTCTTCAGAACCTCTTGTAAAGCAGTATTAACGTCCATTACACCTCCAGCAGCAATGCCTTCCTCGGCCATGGCGGTGGGTTACGGGTGAAGTTGAATCTTGAACGCACCCAAGCCTCCGCCTCCGCGCGACTCGGCGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAATGCTAGGGTGAGTGGTAGGAAGTTTTTTC CTX 87.00 LQ 0 other 0 NM_001098638 geneB_no_transcripts MV4_11_RNAseq_1 MIR6723 chr1 568070 + intergenic PRICKLE1 chr12 42853069 - 3utr > 2 3 102 176 0.500 0.000 22 130 0.420 0.160 104 110 42 48 TTCGAAAAACCCGTATACAAAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAAAAAAAAAAAAAAAAAACAAAAAACATTGCTATTTATAACTTAGTATTTCATAGACTTAAGTGTATTCCTAATTTAACGGTGCAAATATTAATGTATATACTGTACAGTTCAGATTTTAAAGCTGATATTTTTATATCCCTGAATTGTAAGCCGTTTGTTACGCTGCAGTGCTAGATTTGCC CTX 87.00 LQ 0 other ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001144881,NM_001144882,NM_001144883,NM_153026 ,,, ,,, ,,, ,,, 2496,2496,2496,2496 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001144881,NM_001144882,NM_001144883,NM_153026;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 RAB3GAP2 chr1 220428041 - intron LSM7 chr19 2328465 - coding > 1 4 183 147 0.670 0.020 43 134 0.220 0.180 190 178 51 3842 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 86.36 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 6,6 2, blat,blat 18,18 312,312 60, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREVES*RASTHSSTLCWTAPLSTCETL, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 C4orf3 chr4 120219643 - 3utr NA chr6 68597536 - intergenic > 2 1 203 146 0.000 0.000 29 57 0.010 0.050 203 199 239 206 CTCAATAGAAGAATTTCACATCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTAATTGGGTAGGATTTCACCCATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTTACAGGGGCTGAATATAAAAGCATTTGTACTTAAAAAACAAAAACAAAAACAAAAAAAACCACTCAGAACAAAGATAAAAATCCAGCTCAGTTTATGGCCTGTCTACCTGCCACCCTCAGGCGATATACAGCACTAGACCCTGAAGGGATAGAAGGCCGCCTTATTCTTAACATGCA CTX 86.00 LQ 0 other , NM_001001701,NM_001170330 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 TMCO1 chr1 165737429 - coding RRM2 chr2 10269409 + coding > 7 0 59 81 0.370 0.650 245 1 0.010 0.000 147 157 1054 1073 CTGGATGAAGGCGAAGGCATACTCCGTGGCTTGAGCTGGCAGCACCCGAGTGCTGAAGGCAGGTGATAGGGTACCCAGGCGGGTGGATTACAGGACAGACAAGTACAAGAGACTGAAGGCAGAAGTGGAAAAACAGAGTAAAAAATTGGAAAAGAAGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCTN CTX 85.75 LQ 0 Fusion 0,0,0,0,0,0,3,3 NM_001256164,NM_001256165,NM_019026,NM_001256164,NM_001256165,NM_019026,, ,,,,,,, 2,2,2,2,2,2,, ,,,,,,, 199,112,301,199,112,301,, ,,,,,,, ,,,,,,, NM_001034,NM_001034,NM_001034,NM_001165931,NM_001165931,NM_001165931,NM_001034,NM_001165931 356,356,356,416,416,416,356,416 10,10,10,10,10,10,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1066,1066,1066,1246,1246,1246,1066,1246 1170,1170,1170,1350,1350,1350,1170,1350 52,52,52,52,52,52,, ,,,,,,, LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,LDEGEGILRGLSWQHPSAEGR**GTQAGGLQDRQVQETEGRSGKTE*KIGKEEGKTNFFEKRVGEYQRMGVMSSPTENS,, TMCO1:NM_001256164[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_001256165[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_019026[1,2]-RRM2:NM_001034[10,10];TMCO1:NM_001256164[1,2]-RRM2:NM_001165931[10,10];TMCO1:NM_001256165[1,2]-RRM2:NM_001165931[10,10];TMCO1:NM_019026[1,2]-RRM2:NM_001165931[10,10];; geneB_transcripts=NM_001034,NM_001165931 ,,,,,,, 0,0,0,0,0,0,, MV4_11_RNAseq_1 DDX21 chr10 70743455 - 3utr ARPC4,ARPC4-TTLL3,TTLL3 chr3 9848217 + 3utr ? 2 4 426 131 0.340 0.000 140 46 0.070 0.010 427 428 1052 1574 GCCACTCTTAAGCTCCTGTGCTATGTAGAATGTTTCCCAGAGAAATAATATCTGAGAAATCAGGCAGTTATCTGGCCAGGGGCTACATCAGGTTCTTCAGTTCCCTCAAAACAACTTAATCACATACAGTTTGTCTTAAAAGGAAGCCTCCAAGCAGCTAAAACAAACTTTCAACAGACATTCAGTTTAACAGATCCTATACTGTGGCTTTAGGAACTAGGCCACTGACTACCTAAAAACCCCAGCTTGCCCACTTGAAGTTAACCTCTAGAAACATTAGTGATCTGTGAAGTTTTCACCATTAAAACAATGCTTTATCATCCAAATCATACTTGTTCTTCTCTTTGCTTTCCAGTTATGAATTTGTTACCTTTTTGCATTTGATTATTTCCAGTGGTTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTATACCTCCACCTCCAGTGGCTGTGACTGGTCCCAGTGATTATACGTTATTGGTTGCTGTGGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACTTATTTTTTCTCTCCTATGCCACCCCAGGTGGGGAGGGA CTX 85.18 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 EIF3B chr7 2414241 + coding GLRX chr5 95152330 - coding > 4 2 230 136 0.000 0.480 43 85 0.000 0.020 231 245 1603 651 GGTACCTGTGGATGTGGTCGAGATGAAAGAAACCATCATAGCCTTTGCCTGGGAACCAAATGGAAGTAAGGTTGCTGTGCTGCACGGAGAGGCTCCGCGGATATCTGTGTCTTTCTACCACGTCAAAAACAACGGGAAGATTGAACTCATCAAGATGTTCGACAAGCAGCAGGCGAACACCATCTTCTGGAGCCCCCAAGGACAGTTCGTGGTGTTGGCGGGCCTGAGGAGTATGAACGGTGCCTCGAGTCTTTATCGGTAAAGATTGTATAGGCGGATGCAGTGATCTAGACTCTTTGCAACAGAAAGGGGAACTGCTGACGCGGCTAAAGCAGATTGGAGCGCTGCAGTAATCACAGATCTCATAGGAAAAGTTCAACA CTX 85.00 LQ 0 Fusion 0,0,0,0,0,0,0,0,0,0,0,0 NM_001037283,NM_003751,NM_001037283,NM_003751,NM_001037283,NM_003751,NM_001037283,NM_003751,,,, ,,,,,,,,,,, 13,13,13,13,13,13,13,13,,,, ,,,,,,,,,,, 1889,1889,1889,1889,1889,1889,1889,1889,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001118890,NM_001118890,NM_001243658,NM_001243658,NM_001243659,NM_001243659,NM_002064,NM_002064,NM_001118890,NM_001243658,NM_001243659,NM_002064 70,70,70,70,70,70,70,70,70,70,70,70 2,2,2,2,2,2,2,2,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 208,208,208,208,208,208,208,208,208,208,208,208 321,321,321,321,321,321,321,321,321,321,321,321 79,79,79,79,79,79,79,79,,,, ,,,,,,,,,,, YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,YLWMWSR*KKPS*PLPGNQMEVRLLCCTERLRGYLCLSTTSKTTGRLNSSRCSTSSRRTPSSGAPKDSSWCWRA*GV*TVPRVFIGKDCIGGCSDLDSLQQKGELLTRLKQIGALQ*SQIS*EKFN,,,, EIF3B:NM_001037283[1,13]-GLRX:NM_001118890[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001118890[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_001243658[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001243658[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_001243659[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_001243659[2,3];EIF3B:NM_001037283[1,13]-GLRX:NM_002064[2,3];EIF3B:NM_003751[1,13]-GLRX:NM_002064[2,3];;;; geneB_transcripts=NM_001118890,NM_001243658,NM_001243659,NM_002064 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 UTP3 chr4 71554993 - coding EIF3D chr22 36907632 - coding ? 4 0 187 83 0.040 0.000 169 0 0.080 0.000 188 180 130 2021 CTTCCTTTTCCGGGTGGAATGATCCCTTGTTCCACCAACTCTAACAATGGCTCCAGCTCATCCTTAACCTCTGTCAACTTGACTTTCAGGTCTTCTATCAGCTCCAAGAGTTCTGGTGATTCCTTTCGCAACATTTTCAGCTTCTCTTTCACTGAAACTTTAGCCAAATCCTTCACGACCCGTGTCTACAGCCTCCCTGATGGCACCTTCAGCTCTGATGAAGATGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAAGAAGAG CTX 84.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 CCT4 chr2 62095569 - 3utr TOP2A chr17 38548989 - coding > 1 7 147 53 0.010 0.000 68 85 0.000 0.010 148 163 1208 3195 GGTCTTCCAGTTGGCATTTGCCTGAAGTTGTATTGAAACAATTTAATGAAAATATTAAATATTTGGTTTCAAAAGGCAGATTTATCTTCTCCCAACATTCTGTTATTTCTGATACTTTTGAAAAACTAATAAAAACTAATAAAAGAAGCAGAAAAGAGAACCAGGTACAAAGACAAAGAAACAAACTACATTGGCATTTAAGCCAATCAAAAAAG CTX 84.15 LQ 1 NLoss 0,0,0 NM_001256721,NM_006430, ,, 13,14, ,, ,, ,, ,, NM_001067,NM_001067,NM_001067 1271,1271,1271 30,30, tuple,tuple,tuple 3812,3812,3812 4596,4596,4596 54,54, ,, VFQLAFA*SCIETI**KY*IFGFKRQIYLLPTFCYF*YF*KTNKN**KKQKREPGTKTKKQTTLAFKPIKK,VFQLAFA*SCIETI**KY*IFGFKRQIYLLPTFCYF*YF*KTNKN**KKQKREPGTKTKKQTTLAFKPIKK, CCT4:NM_001256721[1,13]-TOP2A:NM_001067[30,35];CCT4:NM_006430[1,14]-TOP2A:NM_001067[30,35]; geneB_transcripts=NM_001067 ,, 1,1, MV4_11_RNAseq_1 PTPRG chr3 61728078 - intron PRPF40A chr2 153512059 - 3utr > 1 3 194 89 0.740 0.000 80 14 1.000 0.010 195 184 6 1689 GTCACGTGAAGATGACAGACGATGAGCTTGTGTATAACATTCACCTGGCTGTCAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGTCCGGGCCTTATATATCAAGAGCACCATGGGCAAGCCCCAGCGCCTATATTAAGGCACATTTGAATAAATTCTATTACCAGTTAAAAAAAAAAAAAAAAAAAAAAGTTGACTTAAACATTTTCTTTAACAGTTGTCTTTTTTTTCTAAATTCAGTCTTTCTCTTGCTTTTTTTCCCCTGCG CTX 83.64 LQ 0 other NM_002841 NM_017892 2793 geneB_no_inframe_contig_found geneB_transcripts=NM_017892;geneb_utr_codons=13 MV4_11_RNAseq_1 RNF135 chr17 29361532 + intergenic FAM73B chr9 131834147 + 3utr > 18 0 208 73 0.930 0.000 226 0 0.730 0.000 209 210 657 88 ATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCCTGACATCCTGTTCTTTTGCACTTACCCTGTGCTGTGAATGTAACAGTGGGCCTTGGCCCCGCCCAC CTX 83.14 LQ 0 other 0 NM_001184992 NM_032809 1782 geneB_no_inframe_contig_found geneB_transcripts=NM_032809;geneb_utr_codons=13 MV4_11_RNAseq_1 GOLGA8T chr15 30440604 - intergenic RNASEH2A chr19 12923888 + coding > 1 3 283 83 0.870 0.000 83 28 0.010 0.000 284 283 708 2510 GAAAAATCTTTCAGTATTTCCATGACACATTCTGTTTACAATAATTCATAAACTGATAAAATTCATTCTAAGAAAACTTGGCAAATAAAACTTTGGACTGGAATTGGCATTTCTTTCTCTGCTTTTCGTTCCCACCATTTCTTTCTTTTATACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATATTATTTTAAAATGACTAAGATAAAGTTTTAGAGAAACTATATTATGGATAGGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGC CTX 83.00 LQ 0 NLoss 0 NM_006397 213 tuple 638 900 geneA_no_transcript_IDs_found geneB_transcripts=NM_006397 MV4_11_RNAseq_1 PSMB7 chr9 127119098 + coding STK10 chr5 171509498 - coding ? 0 4 81 143 0.000 0.000 1 164 0.000 0.060 81 75 3756 114 CCCTTTCTCACACCTGTACCGGCCAAGCCTGGTCCCCTTCTTGTTGGGCACTGTGTATGGGCGGAGAAAATCCATGTTCTTTGACACGGAATTAGAGAACCTGGAGCGTCAGCAAAAGCAGCAAGTGGAGAAGATGGAGCAAGACCATGCCGTGCGCCGCCGGGAGGAGGCCAGGCGGATCCGCCTGGAGCAGGATCGGGACTACACCAGGTTCCAAG CTX 82.00 LQ 1 Fusion unhandled orientation ? MV4_11_RNAseq_1 SUV420H2 chr19 55859473 + 3utr YWHAB chr20 43536786 + 3utr > 3 0 72 81 0.000 0.490 156 0 0.090 0.000 73 67 61 1696 CCTCCCCTCCCCCACACCAGAAAGGGGTATGTTGGGGGATTGGAAGCACTTGAACTTTTTATTTTATTAAAACAAAAAAAAAAAAAAAGAAAAAAAACAAAAAAAAAAATCCCTCCTTTCTAGCTGAACAAAAATGTGCAGTTAATACTTG CTX 79.56 LQ 0 other , NM_032701,NM_032701 , , , , , , NM_003404,NM_139323 , , , , 741,741 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_003404,NM_139323;geneb_utr_codons=13 , , MV4_11_RNAseq_1 TAX1BP1 chr7 27868484 - 3utr C11orf57 chr11 111955527 + 3utr ? 4 1 223 106 0.000 0.030 46 112 0.060 0.040 223 229 719 257 CTAGGGAATAAATAAAGATACGAACACACAAGAACTTTTTTTTAAAGCAGGTAAGATTAACAGAGATTAAAATTTATTGATAAGCCAAAGACTGACCCTGATCCTAGTAACACCAAACTCAAAGTAGCTCCTGGTCAGAAAGTGCAGTAAAGGGTGCATGAAAGCATCCGCTCTATGGTCTCCTCAGTGGTCTATTTTAGGTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGGTCATGTATAAGCAATAAAGCTGTTTTTTTTTTTTTATTTTTTTTAACCCCAAATTTTTTTTTTTTCCTTTGGCTTTGATGGTTCTTCCAACCCC CTX 78.31 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 NA chr5 165809387 - intergenic CWC15 chr11 94704231 - coding > 1 2 266 137 0.750 0.000 78 12 0.060 0.000 267 273 324 1299 CCTTGTTTTGCAAATAAAACTGGCTCAGTTGGTTGCTTTTTGGTGATTAGTCAAAGAGACCAAATCCCATATCCTCGTCCGACTCCTCCGACTCTTCCTTGGCTTCAACCTTAGCTGGGGCTGCAGCAGCAGCAGGAGCAGCTGTGGTGGCAGCAGCCACAGGGGCAGCAGCCACAAAGGCAGATGGATCAGCCAAGAAGGCCTTGACCTTTTCAGCAAGTGGGAAGGTGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGAGAACATACAACCTCCTCTTCAGTGTCAAAAAGCCACGGTTAGACCAGATTCCTGCCGCCAACCTTGATGCAGAGGACCCTCTAACAGATGAGGAATATGAAGATTTTGAAGAAGAAAGTGATGATGATGATACTGCAG CTX 78.00 LQ 0 NLoss NM_016403 geneB_CDS_mapping_exception=NM_016403:-4;geneB_breakpoint_not_mapped_to_CDS=NM_016403 geneB_transcripts=NM_016403 MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16344881 - 5utr PLIN3 chr19 4838609 - 3utr ? 4 2 444 126 0.000 0.170 27 133 0.030 0.060 444 443 16516 1156 CACCCAAGACCATCCTTTATTGTAGTATTAGTTCATGGTAACTGCATGAAAAAACATTTCAGGAGGAATTTACAATTTCCAGCTTAAAGAACTTGCCCACCAACATAACCAATTTATGAAAGTCAATTCATTAAAAGGTATAGAACCTCTTGTTGGGCATGATGGCAAGGGACAAAGCTACAACTTGGCCTGTGCCTTTGGAAGCTGAGGCAGGAGGACCATCTGAGCCCAGGAGCCTGAGACCAGCCTGGGCAACATAGAGAATCCGTCTCAACAAAAAAAAAATTTTAGCCAGGTGTGCTGTGAGCTGTAGTCCCAGCTACAAGGTGGGAGGATTGCTTAGGCCTGGGTGATTGAGGATGCAATGAGCTGTGATTGTGCCACCACACTCCAGCCTGGGCAATACAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAGGATATAGTTCATATACCACTTATTTGTTTAAACCGATGTCCCTGAATATCAACCTGTAGCTAATGGACTTGGGTTTTCTGTTCTAAGTGGGCCTCCTTGGGATGGG CTX 77.70 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 GAPDH chr12 6647504 + 3utr ANKRD26P3 chr13 19878524 - intron > 6 0 97 78 0.540 0.520 161 1 0.050 0.000 127 147 17043 160 GAGGAAGTGAAAGTCCCTCACAGCTGTGCAGTCCCTGCCACACTCAGGCCCCCACCACACAGACTCTCCTCTTCTCACTGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGTCCTAGGGAGCCGCACCTTGTCATGTACCATCGATTTGGATTTGCTGAAATTGGTGTTGGGCATATTAGCAAAATATTCTTAATTTGTGGACTCGATTCTTTTTTACTACATATTTCCC CTX 77.28 LQ 1 other ,,, NM_001256799,NM_001289745,NM_001289746,NM_002046 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 NDUFB9 chr8 125551393 - 5utr VLDLR chr9 2650388 + coding > 11 0 393 105 0.030 0.000 77 0 0.110 0.000 394 407 1340 174 TGGCAAAGTAATCAGGATACATTGCCTTCTCAGCAGGATGCTAGTCATCTAAGCACCATTCTGGGACCTTGTAGCAATCGTATCTCTCATAGGAGGTGCCCCCAGGAGAGTCAGGGAAGATGTATGGCTGTGGATGCTGACGGTACCAGAATTCTTCCTCGGCCTCCTTCAGCAGCTGGGTGGCCTTCGCCATATCCTTTTCATTCTTATGTTCTTCAAACCGGGCTCTCATCAAACAAGCAAAGTATCGGTATTTGTCTCTCTGGACGCACCACGACTCGAGGTGGCGTAGCGCCCGCTTATAAAGCCGCAACACCTTTTGCTGATGGGTCAGGTAGGGTCCCGACGCCAAGAACGCCATTACGGCGCTGACCTTCCCCGGCCGCGCGGAGAGCCAGGAAACTGCAAGACATGGAGAATGGAGGATGTGAATACCTATGCCTGCCAGCACCACAGATTAATGATCACTCTCCAAAATATACCTGTTCCTGTCCCAGTGGGTACAATGTAG CTX 77.00 LQ 0 NLoss 0,0,0,0,0,0,3,3 NM_001278645,NM_001278646,NM_005005,NM_001278645,NM_001278646,NM_005005,, ,,,,,,, 1,1,1,1,1,1,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001018056,NM_001018056,NM_001018056,NM_003383,NM_003383,NM_003383,NM_001018056,NM_003383 708,708,708,708,708,708,708,708 15,15,15,15,15,15,, blat,blat,blat,blat,blat,blat,blat,blat 2123,2123,2123,2123,2123,2123,2123,2123 2538,2538,2538,2622,2622,2622,2538,2622 136,136,136,136,136,136,, ,,,,,,, WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,WQSNQDTLPSQQDASHLSTILGPCSNRISHRRCPQESQGRCMAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGICLSGRTTTRGGVAPAYKAATPFADGSGRVPTPRTPLRR*PSPAARRARKLQDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNV,, NDUFB9:NM_001278645[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_001278646[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_005005[1,1]-VLDLR:NM_001018056[15,18];NDUFB9:NM_001278645[1,1]-VLDLR:NM_003383[15,19];NDUFB9:NM_001278646[1,1]-VLDLR:NM_003383[15,19];NDUFB9:NM_005005[1,1]-VLDLR:NM_003383[15,19];; geneB_transcripts=NM_001018056,NM_003383 ,,,,,,, 0,0,0,0,0,0,, MV4_11_RNAseq_1 MIR6723 chr1 565784 + intergenic TXNRD1 chr12 104659524 + intron > 0 7 141 149 0.500 0.750 0 149 0.000 0.030 150 160 74 1818 TTCCGATCTATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCTTCCGATCTCGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAGGTGCAGGGCCCTCGTCCGGGTGTGCCCCAAATAAACTCAGGAACGCCCCGGCGGAA CTX 74.50 LQ 0 other NM_001093771 304 1944 geneB_no_inframe_contig_found geneB_transcripts=NM_001093771 MV4_11_RNAseq_1 FAU chr11 64888110 - 3utr SPICE1 chr3 113214930 - intron > 2 1 471 85 0.000 0.650 27 65 1.000 0.120 471 471 2133 32 CGCCGTTCAGTCGCCAATATGCAGCTCTTTGTCCGCGCCCAGGAGCTACACACCTTCGAGGTGACCGGCCAGGAAACGGTCGCCCAGATCAAGGCTCATGTAGCCTCACTGGAGGGCATTGCCCCGGAAGATCAAGTCGTGCTCCTGGCAGGCGCGCCCCTGGAGGATGAGGCCACTCTGGGCCAGTGCGGGGTGGAGGCCCTGACTACCCTGGAAGTAGCAGGCCGCATGCTTGGAGGTAAAGTCCATGGTTCCCTGGCCCGTGCTGGAAAAGTGAGAGGTCAGACTCCTAAGGTGGCCAAACAGGAGAAGAAGAAGAAGAAGACAGGTCGGGCTAAGCGGCGGATGCAGTACAACCGGCGCTTTGTCAACGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCCCAATGCCAACTCTTAAGTCTTTTGTAATTCTGGCTTTCTCTAATAAAAAAGCCACTTAGTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAGTTGTAAAAAAAAAATCTCATAATGTTTTAAGAAAGTTTAAAAATTTGTGTTAGGCCACATT CTX 74.45 LQ 0 other NM_001997 NM_144718 292 2568 geneB_no_inframe_contig_found geneB_transcripts=NM_144718 MV4_11_RNAseq_1 RBM14,RBM14-RBM4,RBM4 chr11 66413643 - 3utr PELP1 chr17 4575581 - coding > 0 3 78 137 0.480 0.040 1 142 0.000 0.040 78 66 892 117 GGGAAGCTACAGAAGTATTGAAGGACAGAAGAACAGGAAAATGGGCAGGAGAGGAAAGGAAAGGAAAGGAAGAGAAGGAAGACTTTGAGGAAGAGGAAGAGGATGAAGAGGAATATTTTGAAGAGGAAGAAGAGGAGGAAGAAGAGTTTGAGGAAGAATTTGAGGAAGAAGAAGGTGAGTTAGAGGAAGAAGAAGAAGAGGAG CTX 73.84 LQ 1 NLoss 0,0,0,0,0,0,0,0,0,0,0,0 NM_001198843,NM_001198844,NM_001198845,NM_001198846,NM_002896,NM_001198843,NM_001198844,NM_001198845,NM_001198846,NM_002896,, ,,,,,,,,,,, 3,2,3,2,4,3,2,3,2,4,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001278241,NM_001278241,NM_001278241,NM_001278241,NM_001278241,NM_014389,NM_014389,NM_014389,NM_014389,NM_014389,NM_001278241,NM_014389 755,755,755,755,755,952,952,952,952,952,755,952 17,17,17,17,17,16,16,16,16,16,, blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat,blat 2264,2264,2264,2264,2264,2855,2855,2855,2855,2855,2264,2855 2721,2721,2721,2721,2721,3543,3543,3543,3543,3543,2721,3543 22,22,22,22,22,22,22,22,22,22,, ,,,,,,,,,,, EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,EATEVLKDRRTGKWAGEERKGKEEKEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEE,, RBM4:NM_001198843[1,3]-PELP1:NM_001278241[17,19];RBM4:NM_001198844[1,2]-PELP1:NM_001278241[17,19];RBM14-RBM4:NM_001198845[1,3]-PELP1:NM_001278241[17,19];RBM14-RBM4:NM_001198846[1,2]-PELP1:NM_001278241[17,19];RBM4:NM_002896[1,4]-PELP1:NM_001278241[17,19];RBM4:NM_001198843[1,3]-PELP1:NM_014389[16,17];RBM4:NM_001198844[1,2]-PELP1:NM_014389[16,17];RBM14-RBM4:NM_001198845[1,3]-PELP1:NM_014389[16,17];RBM14-RBM4:NM_001198846[1,2]-PELP1:NM_014389[16,17];RBM4:NM_002896[1,4]-PELP1:NM_014389[16,17];; geneB_transcripts=NM_001278241,NM_014389 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,, MV4_11_RNAseq_1 PIK3AP1 chr10 98510050 - intergenic MGC34796 chr1 62120833 + 5utr > 3 0 128 89 0.860 0.520 152 1 0.150 0.180 130 150 946 1 GGTAGAAATTGCCAGAAATGTTGATTCCTTCACAGCGTTCGACCACCACCTTCCGCCCCAGCAGTATCTGTTTAGCCATGATGTCCGCCAGTCCGCCCAGGAGATGGCCTCGATCATCAAGCACCAGGACCTGCACTTCCGCCATCTTCGTCTCTATCCCCAGGAATAGAACTTAAGGGGTGGGAAGAACAGGAAAAGAAGCTGGAACACAGAAGAGAGGAGGTTGTGTCTCTTGCTCATAGCAAG CTX 73.10 LQ 0 other 0 NM_152309 geneB_no_transcripts MV4_11_RNAseq_1 LPAR1 chr9 113679202 + intron PCNP chr3 101295283 + intron ? 0 3 86 78 0.000 0.800 1 146 0.000 0.050 86 73 9 485 GGAAAAAATAACTGTAACAATATGCATGGAAAACTATATAATTCATTCTTTTGGATAGGCCAAAATAAAGTCTTTTTTTTTTTTTTTATATAAACTATTTATTAACAGACAAGGCCTACAGACTTATTTCTTCTTGGACACACCCACGGTG CTX 73.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 CCM2 chr7 45115435 + coding EIF3CL_locA,EIF3C_locA,MIR6862-1_locPar chr16 28391201 - coding > 4 0 143 144 0.000 0.500 146 0 0.050 0.000 144 138 237 1291 GTACCGCAATGGGGCCTCTATCCACGAGTTCTGCATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTTGGTCTGAGGCCCTTCATCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTCCTGGAGACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAGACGGCCTACTGAGCTCTCCACTCTGTTTCCCGCCTGGGCCATCCAACCTTGAAGTCCTAAACCACACCTCTG CTX 73.00 LQ 1 Fusion 0,0,0,0,3 NM_001029835,NM_001167934,NM_001167935,NM_031443, ,,,, 10,9,8,10, ,,,, 1177,940,841,1114, ,,,, ,,,, NM_001099661-locA,NM_001099661-locA,NM_001099661-locA,NM_001099661-locA,NM_001099661-locA 888,888,888,888,888 21,21,21,21, tuple,tuple,tuple,tuple,tuple 2663,2663,2663,2663,2663 2745,2745,2745,2745,2745 46,46,46,46, ,,,, VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL,VPQWGLYPRVLHQPAAALRGQPQVPAAWSEALHP*EGQPALRELPGDQKDGYRKNEGYMRRGGYRQQQSQTAY*ALHSVSRLGHPTLKS*TTPL, CCM2:NM_001029835[1,10]-NM_001099661-locA:NM_001099661-locA[21,21];CCM2:NM_001167934[1,9]-NM_001099661-locA:NM_001099661-locA[21,21];CCM2:NM_001167935[1,8]-NM_001099661-locA:NM_001099661-locA[21,21];CCM2:NM_031443[1,10]-NM_001099661-locA:NM_001099661-locA[21,21]; geneB_CDS_mapping_exception=NM_001037808-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001037808-locA;geneB_CDS_mapping_exception=NM_001199142-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001199142-locA;geneB_CDS_mapping_exception=NM_001267574-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001267574-locA;geneB_CDS_mapping_exception=NM_001286478-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001286478-locA;geneB_CDS_mapping_exception=NM_003752-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_003752-locA geneB_transcripts=NM_001037808-locA,NM_001099661-locA,NM_001199142-locA,NM_001267574-locA,NM_001286478-locA,NM_003752-locA ,,,, 0,0,0,0, MV4_11_RNAseq_1 SWAP70 chr11 9773160 - 3utr TPM3 chr1 154155640 - 5utr ? 0 5 96 176 0.000 0.800 1 145 0.000 0.210 96 106 144 1366 TTATATTCCAGTTTCCTCTCATGTAAATAAATACATACACTGAATCTCTAATACCACTCTCTCTAGATGTATACATCTATTTGGAATTGCTTTCTTCCGCCGAGCGGAGGAGGCAGGAACCGGAGCGCGAGCAGTAGCTGGGTGGGCACCATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCGAGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGA CTX 72.50 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 TXN chr9 113006296 - 3utr ANP32B chr9 100777785 + 3utr > 4 0 125 160 0.500 0.490 142 0 0.170 0.010 126 128 59 2529 TGTTTTCTGAAAACATAACAAGCCATTGGCTATTTAAAACTTGTAATTTTTTTAATTTAAAAAAATATAAAATATGAAGACATAAACCCAGTTGCCATCTGCGTGACAATAAAACATTAATGCTAACAGCTGTTAAAAAAAAAAAAAAAAGGTAGCTGTGATACAAACCCCAGGACACCCACCCACCCAAAGAGCCAAAGAATAGTTCCTGTGACATTCCGCCTTCCTTCCATGTAGTCCCTCTTGGTAATCTACCACCAAGCTTGTGGACTTCACCCCAACAAAATTG ITX 72.42 LQ 0 other , NM_001244938,NM_003329 , , , , , , NM_006401,NM_006401 , , , , 756,756 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_006401;geneb_utr_codons=13 , , MV4_11_RNAseq_1 SRSF2,MIR636 chr17 74730201 - 3utr SENP3,SENP3-EIF4A1,EIF4A1 chr17 7482017 + 5utr > 4 25 284 64 0.000 0.000 156 70 0.120 0.030 285 288 65 3436 AACTGCACTTCCAGTCACCCGGGCCTTGCATATAAATAACGGAGCATACAGTGAGCACATCTAGCTGATGATAAATACACCTTTTTTTCCCTCTTCCCCCTAAAAATGGTAAATCTGATCATATCTACATGTATGAACTTAACATGGAAAATGTTAAGGAAGCAAATGGTTGTAACTTTGTAAGTACTTATAACATGGTGTATCTTTTTGCTTATGAATATTCTGTATTATAACCATTGTTTCTGTAGTTTAATTAAAACATTTTCTTGGTGTTAGCTTTTCTCACAAAAAAAAAAAAAAAAACACTAATCCATTTCCCTAACCTAGTAACCTCCAGATCCCAGAGGCTCT ITX 70.64 LQ 2 other ,,, NM_001195427,NM_001195427,NM_003016,NM_003016 ,,, ,,, ,,, ,,, ,,, ,,, NM_001204510,NM_001416,NM_001204510,NM_001416 ,,, ,,, ,,, ,,, 1044,1221,1044,1221 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001204510,NM_001416;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 ERGIC3 chr20 34145405 + 3utr FAM72C_locB,FAM72A chr1 206139156 + 5utr > 1 2 114 139 0.000 0.670 16 65 1.000 0.010 117 125 6 241 TTCCTCTGTCTCCTCTTTCTCCCTGGCCCGTGGTTGTCCCCCAGCCTCTCCCACCCCCCACCTCCTCGGTCAGCCCCAGCCCCAGGTTGATAAATCTATTGATTGATTGTGATAGTAAAAAAAAAAAAAAAAACTAATTTCCTTCCCAATATTAGGACTTAGAAAAGCTCTAGGTCCCGCAATTTGAATTTTAGCCCAGGGGAATCAAAATAGTAGGAGCATTACTCTTGTTTCCTTTTTCAAAATCCCACACCTCATCCTTCC CTX 70.28 LQ 0 other 0,0,0,0,0,0 NM_015966,NM_198398,NM_015966,NM_198398,, ,,,,, 13,14,13,14,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001123168,NM_001123168,NM_001287385-locB,NM_001287385-locB,NM_001123168,NM_001287385-locB -49,-49,-49,-49,-49,-49 1,1,1,1,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 450,450,,,450, 44,44,44,44,, ,,,,, FLCLLFLPGPWLSPSLSHPPPPRSAPAPG**IY*LIVIVKKKKKTNFLPNIRT*KSSRSRNLNFSPGESK**EHYSCFLFQNPTPHPS,FLCLLFLPGPWLSPSLSHPPPPRSAPAPG**IY*LIVIVKKKKKTNFLPNIRT*KSSRSRNLNFSPGESK**EHYSCFLFQNPTPHPS,FLCLLFLPGPWLSPSLSHPPPPRSAPAPG**IY*LIVIVKKKKKTNFLPNIRT*KSSRSRNLNFSPGESK**EHYSCFLFQNPTPHPS,FLCLLFLPGPWLSPSLSHPPPPRSAPAPG**IY*LIVIVKKKKKTNFLPNIRT*KSSRSRNLNFSPGESK**EHYSCFLFQNPTPHPS,, ERGIC3:NM_015966[1,13]-FAM72A:NM_001123168[1,4];ERGIC3:NM_198398[1,14]-FAM72A:NM_001123168[1,4];ERGIC3:NM_015966[1,13]-NM_001287385-locB:NM_001287385-locB[1,4];ERGIC3:NM_198398[1,14]-NM_001287385-locB:NM_001287385-locB[1,4];; geneB_CDS_mapping_exception=NM_001287385-locB:-2 geneB_transcripts=NM_001123168,NM_001287385-locB;geneb_utr_codons=13 ,,,,, 0,0,0,0,, MV4_11_RNAseq_1 FAM45B_locB chrX 129630733 - 5utr SNRNP40 chr1 31732618 - 3utr ? 4 0 321 77 0.500 0.000 140 1 0.020 0.000 322 313 665 815 GCCTTTCTCTGGTTTTGGCCCCTGTAGGAAGTTAATCTCATATTCCCTTAGCAATAATATAAGGTCACTGTTTCAGTCCTACACACTTTTATATTCAATGGGCTTCTTAGTTTATCACATAAGGACTGGCACTTTTTTCAAAAGAATATTGCTAACAGGGTTAAATGAGTGCTAATGGCTGAACGTTTGCCAAATGCTTACTTCTGCGATAGTATAAATATGGATTATTAAAGTTGTCTACTCAAGTATAAAATATATGCAAAACTCTCATAGGCAAAATGTTCAAAGGCCGGGAAAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACTGGCTTGTATGATATTTTCTTTCTGTATTTCTCTATATCATTTTGTATTAAAAGCC CTX 70.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 DDX21 chr10 70743473 - 3utr PLCB3 chr11 64035102 + 3utr ? 1 2 210 200 0.000 0.560 9 136 0.010 0.140 210 209 1136 67 CTATACTGTGGCTTTAGGAACTAGGCCACTGACTACCTAAAAACCCCAGCTTGCCCACTTGAAGTTAACCTCTAGAAACATTAGTGATCTGTGAAGTTTTCACCATTAAAACAATGCTTTATCATCCAAATCATACTTGTTCTTCTCTTTGCTTTCCAGTTATGAATTTGTTACCTTTTTGCATTTGATTATTTCCAGTGGTTTGGTTCTTTTTTTTTTTTTAACTTTTTATCTAGAAATTTTATTTTTTTAAACCCGGGGCAAGTACCTCAGCTAACTCCCTTCATCCTCCTGGGGCCCCTCCTTCCTGCCCTCAGTCTTAGGTTAGGGCCTTGGTCAGGGCTTTGCTCCCTGTGACACCCACACCCTCGAGCTAGCAGCGTCTCCTCCCTTCCCCGGGAGAGCTGGC CTX 69.98 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 ACTR3B chr7 152522207 + coding NA chr7 152627780 + intergenic > 6 6 65 131 0.000 0.000 692 208 0.130 0.860 65 65 59 6 CTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGCCCGCTGTATAAGCATCCAGACATGTATTAGTCTGTTCTTGCACTGTCATAAAGAAATACCTGAGACTGGAAGTGCCTTTGGGAGGAGAGGAGGCAACCGCAGTCCCTGCTGTGCAGAGGGCAGTAAGAAAATCGTTTGGTGGG DEL 69.34 LQ 0 CLoss , NM_001040135,NM_020445 , , , 951,951 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr TUBA1B chr12 49543038 - intergenic > 25 0 80 72 0.000 0.030 312 1 0.080 0.000 80 79 21481 201 AATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCAACAAGAGCGAAACTGTCTCAAAAGAAAAACAAAACAAAACAAAACAAGTTCAGTAAAGTGAAG ITX 67.53 LQ 1 other 0 NM_000239 NM_006082 geneB_no_transcripts MV4_11_RNAseq_1 RAB3GAP2 chr1 220428045 - intron LSM7 chr19 2328450 - coding > 4 0 181 305 0.670 0.000 67 0 0.220 0.000 182 175 51 5949 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGAAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGCCAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAGCTGGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGACGGCATGGAGGCCATCCCCAACCCCTTCATCCAGCAGCAGGACGCCTAGCCTGGCCG CTX 67.00 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 11,11 2, tuple,tuple 33,33 312,312 63, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA*PG, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 MIR6723 chr1 568070 + intergenic ZNF766 chr19 52795011 + 3utr > 2 2 101 144 0.500 0.000 18 96 0.420 0.030 104 95 42 107 TTCGAAAAACCCGTATACAAAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTCTCAAAAAAAAAAAAAAATTATTTGGGTTTGAAAGGCCAGGGGCAGTGGTTCATGCCTATAATCTCAGCACAATAGAAAGCCAAGACAGGAGGGTCACTTGATGCCTGGAGATCAAGATAAGTATGGGCAACGTAGCAAGGCC CTX 66.00 LQ 0 other NM_001010851 1407 geneB_no_inframe_contig_found geneB_transcripts=NM_001010851;geneb_utr_codons=13 MV4_11_RNAseq_1 ATP5L chr11 118279914 + 3utr THSD4 chr15 71456721 - intron > 0 4 153 90 0.670 0.740 0 199 0.000 0.050 153 162 481 335 TTATGTCGGAGAGATTATAGGCAAGCGGGGCATCATTGGCTATGATGTTTGAAGACCAATCTTTAACATCTGATTATATTTGATTTATTATTTGAGTGTTGTTGGACCATGTGTGATCAGACTGCTATCTGAATAAAATAAGATTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAGTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTTTTAGTTTTGTTTTCTTTTTCTTAGGTTTGAAATTTTTTTTTTTAGGGGTAACTTATTTTTTTGTTTTT CTX 65.67 LQ 0 other NM_006476 NM_024817 geneB_no_inframe_contig_found geneB_transcripts=NM_024817;geneB_transcript_strand_disagree=NM_024817 MV4_11_RNAseq_1 STT3B chr3 31674558 - coding HNRNPH3 chr10 70100933 + coding ? 0 3 140 240 0.000 0.000 0 131 0.000 0.010 145 150 1670 1124 CGATCTCTTGCCTTTCTTAAAAACCAGCTTATTTTTAATGTAGCCACGCTTCCTTTTGGTAGTCTTCTTTGACAAATACTTCTGTTTTGGGAAAATGTTGGTGACTCGAGGTTTGTGATCTAATGTCTCCCTGTTATCAGGTGCTAATATCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATATATTGAACTCTTCTTGAATTCTACTCCTGGAGGCGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTACGGAAGAGATGGAATGGATAATCAGGG CTX 65.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NPM1 chr5 170837888 + 3utr MCTP1 chr5 94051073 + intron > 9 2 436 157 0.890 0.620 144 86 0.120 0.060 437 437 425 77 GAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGTCTCTTTAAGAAAATAGTTTAAACAATTTGTTAAAAAATTTTCCGTCTTATTTCATTTCTGTAACAGTTGATATCTGGCTGTCCTTTTTATAATGCAGAGTGAGAACTTTCCCTACCGTGTTTGATAAATGTTGTCCAGGTTCTATTGCCAAGAATGTGTTGTCCAAAATGCCGTTTAGTTTTTAAAGATGGAACTCCACCCTTTGCTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACATAGTAGTAGCGGTGGTCAGACATGGAAATGGTGGGGAGACAAAAATATACATGTGAAATAAAACTCAGTATTTTAATAAAGTAAAAAAAAAAAAAAAAAAAAAACACCACCACCAAAACCTGGAATCCACTATGTGGATACTGCTTAGATCATATACAAACTAAGCCTGACCACCTTCTTAAAAATAATAGTCTAGTCATATATTTTATACGGTAGTATATGCTGTATTAGGTTCTAAC INS 64.18 LQ 1 other ,,,,, NM_002520,NM_002520,NM_002520,NM_199185,NM_199185,NM_199185 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001002796,NM_001297777,NM_024717,NM_001002796,NM_001297777,NM_024717 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001002796,NM_001297777,NM_024717;geneB_transcript_strand_disagree=NM_001002796;geneB_transcript_strand_disagree=NM_001297777;geneB_transcript_strand_disagree=NM_024717 ,,,,, ,,,,, MV4_11_RNAseq_1 SH3BGRL3 chr1 26607711 - 3utr PRPF38B chr1 109242304 + coding > 0 3 117 118 0.000 0.050 0 64 0.000 0.020 129 130 4020 707 TTTAATGTAATTTCTTAGACTAATTGTTAAGGAATGTTGCCTTTAGATGGAGGAGAGGGGACTACATTTAGAGAGGATGGAGGAGAAGTGGCCTGCATTGGGGGAGGGACTCTAAGGTTAGGTTAGGAAACACAGAAGTAGGAGTCGAAGTAGAAATGCAGGGAAACGAAGTAGAAGTAGAAGCAAAGAGAAATCAAGTAAACATAAAAATGAAAGTAAAGAAAAATCAAATAAACGAAGTCGAAGTGATCGGAAGAGCACACGTCTGAACTCCA ITX 64.00 LQ 0 NLoss 0,0 NM_031286, , 3, , , , , NM_018061,NM_018061 435,435 6, tuple,tuple 1303,1303 1641,1641 43, , LM*FLRLIVKECCL*MEERGLHLERMEEKWPALGEGL*G*VRKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSDRKSTRLNS, SH3BGRL3:NM_031286[1,3]-PRPF38B:NM_018061[6,6]; geneB_transcripts=NM_018061 , 1, MV4_11_RNAseq_1 LOC100287846 chr8 48069205 - intergenic UBE4A chr11 118268464 + 3utr > 8 0 157 80 0.890 0.000 64 1 0.790 0.000 158 144 32 85 CTCTTGATATATAAGGCCCGGACATTCTGCCAGTTTTTCTTGAGCAATGACACCAAGAAGTTGACAGCCAGGTGAATGTTATACACAAGCTCATCGTCTGTCATCTTCACGTGACCAACAGCTACAGCCAGACATAACACCTTCTTCATTTGGAACTTGATTGTGGAGATGGTCTCTTTCAAATAAATAGTAGTTTTATATTTCAACACAAGTTGCTATAAGCAGTCCTTG CTX 64.00 LQ 2 other , , , , , , , , NM_001204077,NM_004788 , , , , 3201,3222 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001204077,NM_004788;geneb_utr_codons=13 , , MV4_11_RNAseq_1 E2F4 chr16 67229791 + coding PPM1H chr12 63359571 + intergenic > 3 0 236 139 0.000 0.660 186 0 0.050 0.000 237 231 576 251 CTCTGCCCAAGCCTGCCCTAGCCCAGTCCCAGGAAGCCTCACGTCCAAATAGTCCTCAGCTCACTCCCACTGCTGTCCCTGGCAGTGCAGAAGTCCAGGGAATGGCTGGCCCAGCAGCTGAGATCACAGTGAGTGGCGGCCCTGGGACTGATAGCAAGGACAGTGGTGAGCTCAGTTCACTCCCACTGGGCCCAACAACACTGGACACCCGGCCACTGCAGTCTTCTGCCCTGCTGCTGCTAAAGTTCCAGCAAAAAAGATCACCGCCGCGAGTAAAAAGGCTCCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCGCCTGCTCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAG CTX 63.24 LQ 2 CLoss 0 NM_001950 915 NM_020700 geneB_no_transcripts MV4_11_RNAseq_1 ARL14EPL chr5 115387535 - intron SRGN chr10 70864278 + 3utr > 3 12 363 82 0.000 0.600 77 32 1.000 0.020 364 351 15 101039 CAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTAGTCTTGTTTGACAAAGCTACCTATGATAAACTCTGTAAGGAAGTTCCCAACTATAAACTTATAACCCCAGCTGTGGTCTCTGAGAGACTGAAGATTCGAGGCTCCCTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGACTTATCAAACTGGTTTCAAAGCACAGAGCTCAAGTAATTTACACCAGAAATACCAAGGGTGGAGATGCTCCAGCTGCTGGTGAAGATGCATGAATAGGTCCAACCAGCTGTACATTTGGAAAAATAAAACTTTATTAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAACACAGTGAATTTGTAGAGTGGGGGTGTTTGACGTATTTTAAAGGGATAAGTGTACTAGATACTATTG CTX 62.80 LQ 0 other NM_001195581 NM_002727 477 geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 MV4_11_RNAseq_1 CTSK chr1 150756877 + intergenic TAOK3 chr12 118684614 - intron > 0 3 79 343 0.520 0.940 1 130 0.000 0.030 84 101 4 560 CTTATGTATTGGTGTAAGAGTTGATGAATGACTTTAGCTGTGTGAATATATAATAGTCAAACTGCAAACATTTTGCATCCCTTTCGTAGAAATGGCATCAAAGGTGGCCTTGGCGAAGTTGCCCAGGGTGGCAGTGCAGCCCCGGGCTGAGGTGTAGCAGTCATCGATACCAGCCATCATGAGCAGCTTCTTAGGCACAGGTGCGGAGACGATGCCAGTGCCCCTGGGTGCAGGGATGAGGCGTACCAGCACAGAGCCGCAGCGGCCTGTCACCTTGCAAGGGACAGTGTGGGGCTTGCCGATCTTGTTCCCCCACTAGCCTCTGCGCACGGGGACGATGGAGAGCTTGGCCAGGATGATCGCCCCACGGATGGCGGTGGCCACCTCCTTGGAGCACTTAACACCCAGACCGACGTGGCCATTGTAGTCCCCGATAGCAACAAAT CTX 62.40 LQ 0 other 0 NM_000396 NM_016281 121 2697 geneB_no_inframe_contig_found geneB_transcripts=NM_016281 MV4_11_RNAseq_1 LOC339862 chr3 18058204 + coding SATB1 chr3 18383739 + intergenic > 10 6 144 154 0.000 0.000 433 184 0.010 0.040 144 144 498 288 AGAAGACAGTCACAGTAGTCCAGATAAGAGATGCATATGTTATCAATCGCCATGTGAAGAAGATGCTTGCTTCCCCTTTGCCTTCTGCCATGATTGTGAGTTTCGCGAGGCCTCCACAGCCATGCTTCCTGTACTGCAGAACTAAATTGACAAGCTGAATCTAAAATTCATAATGTAAGTACCCAGAATCACTGAAACAAGTTAGAAGAAAAAGAAGAAATGTAGAAGACTTGGGTACTTGAATTTAATATTCATTATAAAGCAGATCAATGATTTCATGGGGACGGTGATTGATGCA DEL 61.70 LQ 0 CLoss 0,0,0 NM_001257177,NM_001257177,NM_001257177 ,, ,, ,, 223,223,223 ,, ,, NM_001195470,NM_002971,NM_001131010 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 DDX21 chr10 70744709 + 3utr NA chr14 99439417 - intergenic > 4 0 104 99 0.670 0.740 236 0 0.010 0.000 142 152 1574 636 TTCGTCTTTATCCCAGGATTCAATCTGAATTTTTAAGTGTATAATGTATTTAGCTACTTTTTGGTTTAAAGGAACTTGTTGGGTTAGCTTGGTAAATGTTATAATTTTTACTATTTTCTACAAAGAAAATATTTTCTAATTTAAGTTGGAGGGTGGGAACCAAGAAGCGGGTGCTCACCCTCCGCAAGTCCTTGCTGGTGCAGACGAAGCGGCGGGCTCTGGAGAAGATTGACCTTAAGTTCATTGACAC CTX 61.36 LQ 0 other , NM_001256910,NM_004728 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 VAMP4 chr1 171652706 + intergenic MAP3K13 chr3 185135592 + intron > 0 4 77 76 0.750 0.060 1 235 0.010 0.030 81 77 0 437 GTTCTTCTTTAGGACTCTGCGATGGATCTTCTTGCGTGGTGCTCGAAGGGCTCTTTGGATCTCTGGGCTTTTCAAGATTCTCAAGTTTTTCAGTGGGTTCTTCTTTAGGACTCTGCGATGGATCTTCTTGCGTGGTGCTCGAAGGGCTCTTTG CTX 59.69 LQ 0 other 0,0,0,0,0,0 NM_003762,NM_003762,NM_003762,NM_001185127,NM_001185127,NM_001185127 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001242314,NM_001242317,NM_004721,NM_001242314,NM_001242317,NM_004721 ,,,,, ,,,,, ,,,,, ,39,,,39, 2901,2280,2901,2901,2280,2901 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001242314,NM_001242317,NM_004721;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 NA chr6 99624506 + intergenic PLAC8 chr4 84035868 - 5utr > 0 6 84 296 0.510 0.040 1 117 0.010 0.290 87 95 0 1441 CTTCAATAGCTTACAGTAAAAGGAGTAAAGGAGTTCAGCCTCAAAACGATATTGTTGACCTGTTATGTTATGAAAAATAATCCAGTGGTGAGATTCTCTCCCAGGCCACAAGACATTTCCTGCTCGGAACCTTGTTTACTAATTTCCACTGCTTTTAAGGCCCTGCACTGAAAATGCAAGCTCAGGCGCCGGTGGTCGTTGTGACCCAACCTGGAGTCGGTCCCGGTCCGGCCCCCCAGAACTCCAACTGGCAGACAGGCATGTGTGACTGTTTCAGCGACTGCGGAGTCTGTCTCTGTGGCACATTTTGTTTCCCGTGCCTTGGGTGTCAAGTTGCAGCTGATATGAATGAATGCTGTCTGTGTGGAACAAGCGTCGCAATGAGGACTCT CTX 58.29 LQ 0 other 3,3 , , , , , , , NM_001130715,NM_016619 -26,-26 , tuple,tuple , 348,348 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_001130715,NM_016619;geneb_utr_codons=13 , , MV4_11_RNAseq_1 RPN2 chr20 35857127 + coding DAPK3 chr19 3969827 - 5utr > 0 4 74 146 0.000 0.000 1 95 0.000 0.170 74 81 1501 58 AAGAAAGATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACTTAATCATTGGAGATGCCACTTTGAAGATGCGGAGGGGTTGCCATTAGGGGACTCCTGAGGTCCTATCTCCAGGCTGCGGTGACTGCACTTTCCCTGGAGTGGAAGCTGCTGGAAGGCGGACCGGCCGCCATGTCCACGTTCAGGCAGGAGGACGTGGAGGACCATTATGAGATGGGGGAG CTX 57.62 LQ 0 CLoss 0,0,3 NM_001135771,NM_002951, ,, 11,12, ,, 1378,1474, ,, ,, NM_001348,NM_001348,NM_001348 -31,-31,-31 2,2, tuple,tuple,tuple ,, 1365,1365,1365 29,29, ,, ERLNLTLPLAPTLST*SLEMPL*RCGGVAIRGLLRSYLQAAVTALSLEWKLLEGGPAAMSTFRQEDVEDHYEMGE,ERLNLTLPLAPTLST*SLEMPL*RCGGVAIRGLLRSYLQAAVTALSLEWKLLEGGPAAMSTFRQEDVEDHYEMGE, RPN2:NM_001135771[1,11]-DAPK3:NM_001348[2,9];RPN2:NM_002951[1,12]-DAPK3:NM_001348[2,9]; geneB_transcripts=NM_001348;geneb_utr_codons=13 ,, 2,2, MV4_11_RNAseq_1 TIMM8B chr11 111955986 - 3utr NA chr1 97145108 - intergenic > 0 3 190 57 0.500 0.970 0 114 0.010 0.020 190 190 3046 1053 CATGGAGTTATGTTGGGATAAATGTGTGGAGAAGCCAGGGAATCGCCTAGACTCTCGCACTGAAAATTGTCTCTCCAGCTGTGTAGACCGCTTCATTGACACCACTCTTGCCATCACCAGTCGGTTTGCCCAGATTGTACAGAAAGGAGGGCAGTAGGCCATCCCCCAGGAGAATGACAGAAGCAAAGGAATTTCGCAGAGCTGAAGATCAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCCTCCTTGCCTTTCGAAGCATCTTTTGGGCAAACTTCTTTCGCAGAGCTGAAGATCAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCG CTX 57.00 LQ 0 other NM_012459 geneB_no_transcripts MV4_11_RNAseq_1 RNF135 chr17 29361517 + intergenic THRIL chr12 125514178 + intergenic ? 7 0 203 125 0.920 0.000 114 0 0.070 0.000 204 212 1772 152 GGAAGAGGTGATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGGTTTTGCTTTGGATTTCAGCCCCCATATCATTTCTGGTAACAGAGCACAGCAATAGAATTTCTCGGAAGCAGACCTTGTGAATCGTACCTGTCTCTTAATTCAGAAATGGTAAGTGAATGGCGTCGAAAGGTGCA CTX 57.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 TARS2,MIR6878 chr1 150471690 - coding PLSCR3,TMEM256-PLSCR3,TMEM256 chr17 7294060 - coding ? 2 1 80 143 0.000 0.000 28 85 0.030 0.080 108 112 112 61 GGAGTTCAGACGTGTGCTCTTCCGATCTCTTAGGTCCATAGAAGGCACCATCTCCAGAGTTGAGGTCCCAGGGTTCTCCAAATTCCTTCAGGGCCTGTTTAAGGACCTGTTCGGCCTGGTCCGAGAAGCCCTCACAGATGCAGATGACTTTGGCCTACAGTTCCCGCTGGACCTGGATGTGAGGGTGAAGGCTGTGCTGCTGGGAGCCACATTCCTCATTGACTACATGTTCTTTGAGAAGCGAGGAGGCGCTGGCAGATCGGAAGAGCAC CTX 56.50 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 FAU chr11 64888174 - coding MIR6723 chr1 567958 - intergenic > 4 0 94 79 0.020 0.660 162 0 0.070 0.000 148 149 12047 1780 GGTTTCATTAGCCGGCCGGAAAAGGTCTGAATTCAGTGTCCTAAGCTGCACACACAGGAGAAGAAGAATAACAAGTCAGGTCGGGCTAAGCGGCGGATGCAGTACAACCGGCGCTTTGTCAACGTTGTGCCCACCTTTGGCAAGAAGAAGGGGGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAG CTX 55.08 LQ 0 CLoss NM_001997 381 geneB_no_transcripts MV4_11_RNAseq_1 UXT chrX 47511205 - 3utr CCDC117 chr22 29184710 - 3utr ? 9 0 469 76 0.010 0.000 109 1 0.140 0.000 470 478 285 456 GGAGAAAGTGCTGCGCTACGAGACCTTCATCAGTGACGTGCTGCAGCGGGACTTGCGAAAGGTGCTGGACCATCGAGACAAGGTATATGAGCAGCTGGCCAAATACCTTCAACTGAGAAATGTCATTGAGCGACTCCAGGAAGCTAAGCACTCGGAGTTATATATGCAGGTGGATTTGGGCTGTAACTTCTTCGTTGACACAGTGGTCCCAGATACTTCACGCATCTATGTGGCCCTGGGATATGGTTTTTTCCTGGAGTTGACACTGGCAGAAGCTCTCAAGTTCATTGATCGTAAGAGCTCTCTCCTCACAGAGCTCAGCAACAGCCTCACCAAGGACTCCATGAATATCAAAGCCCATATCCACATGTTGCTAGAGGGGCTTAGAGAACTACAAGGCCTGCAGAATTTCCCAGAGAAGCCTCACCATTGACTTCTTCCCCCCATCCTCAGACATTAAAGAGCCTGAATGCCAAAGGAGACGGCTCAGATGAATAAGCACCACAAGGATGAAGAAAACAATTTTTGTAGAAATTTTTGCAAGAAGATAAAG CTX 54.50 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 HNRNPH1 chr5 179041789 + 3utr PLIN3 chr19 4838609 - 3utr ? 4 2 340 90 0.510 0.000 46 122 0.030 0.060 341 340 3157 1156 CTCCTATATTGTTTTACAAAAAAATAAAAGCATGTCTTTCAACATGCATCCAAAACAGTGTTCAATTTAACGTGGCAAAGGGCAACATTTAACATAATTCAACTGCTTTTACCTAAATACGCTTACTGCTTAAGTACATCCTATAACTAACTTGAGAAAAGCTGGAACTTAAGTTTAACAGTTATAGTTTACTCAGCTTCACTGTTACATCCTAGATGAGTATTGTATTCAAAAATACTGGGCCTTAAGTCTTCATAACAATCCTGATTTCCACTTAGAGTAAGCATAAATCACAAGCTTGTATTGCAGAAACTGTTAAACTGAAGTTTTCTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGGGATATAGTTCATATCCCACTTCTTTGTTTACACCGATGTCCCTGAATATCAGCCTGTAGCT CTX 52.89 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 CAT chr11 34493602 + 3utr SRGN chr10 70864278 + 3utr > 4 81 267 56 0.000 0.000 187 52 0.280 0.020 268 271 100 101039 TGGCTATAAATATATAAAAAGAAAAGATAAAGATGATCTACTCAGAAATTTTTATTTTTCTAAGGTTCTCATAGGAAAAGTACATTTAATACAGCAGTGTCATCAGAAGATAACTTGAGCACCGTCATGGCTTAATGTTTATTCCTGATAATAATTGATCAAATTCATTTTTTTCACTGGAGTTACATTAATGTTAATTCAGCACTGATTTCACAACAGATCAATTTGTAATTGCTTACATTTTTACAATAAATAATCTGTACGTAAAAAAAAAAAAAAAAAAAAAATAATGAAACACAGTGAATTTGTAGAGTGGGGGTATTTGAC CTX 52.01 LQ 1 other NM_001752 NM_002727 477 geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 MV4_11_RNAseq_1 LRRC8D chr1 90309341 + 5utr GEMIN8P4 chr1 90432748 + intergenic > 8 8 74 109 0.000 0.000 372 228 0.070 0.730 74 74 60 10 CCAGCCTCCGGAGCTCGCCCAAGCCGCGTCCCCAGAGAGCGCCCTGAGAGAACAGGGTGGCCGCTTGGTCCAGAACTGAGCTGTGGGACGCTTACCCTCATGATATTCCCTTACTTTGAGATAACTGCGATTCTCTCACTTAATGGCAAGGAAAAAAATACTTGGAATGTGGCCCCTGAAAG DEL 51.03 LQ 0 other , NM_001134479,NM_018103 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 FGL2 chr7 76822915 - 3utr NA chr11 41995879 - intergenic > 4 0 77 72 0.000 0.000 221 1 0.010 0.000 78 78 2270 12 TAATAGTAATGCTCCAAATGAATTAATGACACATCTGTTCAATAAATAAAGAGCTTAAATATACAAAACATAAGAAAAAAAAAAAATCAAATTTTACTGATAATAGTAATGCTCCAAATGAATTAATGACACATCTGTTCAATAAATAAAG CTX 49.31 LQ 0 other , NM_006682,NM_020879 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 RFXANK chr19 19307855 + coding MIR371A chr19 54278870 - intergenic > 3 0 171 75 0.000 0.750 190 1 0.020 0.010 172 183 994 0 GGCTCAGACACTGTGGTCCTCAGTCTCTTTCCCTGCACCCCTGAGCCTGTGAATCCTGAACCGGATGCCAGTGTTTCCTCTCCACAGGCAGGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTGGACTCCCTGTCCATCTCGGAGACAGAGGCCATGGCGCGGGCGAGTGTAGGGCTGGCGCTGCCGGACGCGGTGCTAGTCGCCGGATGAAGTGAG ITX 48.50 LQ 0 CLoss ,,, NM_001278727,NM_001278728,NM_003721,NM_134440 ,,, ,,, ,,, 271,268,271,268 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 ATG3 chr3 112251357 - 3utr CAP1 chr1 40537925 + 3utr > 2 12 145 50 0.000 0.000 109 48 0.160 0.060 146 150 50 2463 TAAAGAATTAACCCATAGATGTGACCATTGACCATATTCATCAATATATACAGTTTCTCTAATAAGGGACTTATATGTTTATGCATTAAATAAAAATATGTTCCACTACCAGCCTTACTTGTTTAATAAAAATCAGTGAAAAGAGAAAAAAAAAAAAAAAAAAACAAACCCACATGATTTCAAGGAGTCTGGCATTCCTG CTX 48.00 LQ 0 other ,,, NM_001278712,NM_001278712,NM_022488,NM_022488 ,,, ,,, ,,, ,,, ,,, ,,, NM_001105530,NM_006367,NM_001105530,NM_006367 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_CDS_mapping_exception=NM_001105530:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_006367:-2 geneB_transcripts=NM_001105530,NM_006367;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 MIR6723 chr1 567127 - intergenic FAM91A1 chr8 124826866 + 3utr > 0 4 85 138 0.500 0.670 0 96 0.280 0.010 93 80 80 763 GGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGAAGAACCATGGGGTCCCCTCTGGTTTCTTGTGTTGAATGAGGCAAGGGTAATCATCTGATTCCGAGCTGAAGACCTCTGGTCCTCTTAAGGAGGGAGAGTGCATTTTTAGAGCTTTTAGCAAAATGTGAAAAGCTGATGTTTGCGAGATCGGAAGAG CTX 48.00 LQ 0 other NM_144963 geneB_CDS_mapping_exception=NM_144963:-2;geneB_no_inframe_contig_found geneB_transcripts=NM_144963;geneb_utr_codons=13 MV4_11_RNAseq_1 RBFOX2 chr22 36234316 - intron CTBP2 chr10 126677467 - 3utr > 6 2 418 216 0.910 0.500 71 136 0.770 0.100 419 424 42 281 CTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCCAAGTGGAGGAAGAAGCGAATGCGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTGGTCCTCTGCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATATAATAAATCACCTCTTCCGCTGTTTTAGCTGAAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATTAAGTTTCACAAGCTGTTTGTACTCAAATATATTTTCTCAGTTTCAGATCCTCTGCTATTTTATTGAGTGGAAAGTCTTGAGCTAAAAGGGTTCAAGAAGAATAATGTTGCATTTCCTTATGTCTCAGGAAACACTTTTTATGGTAACTTGTCAGATTGTCTATGAACAAACCCACTTTTTTAGACATTGATAAAG CTX 47.74 LQ 1 other ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001031695,NM_001031695,NM_001031695,NM_001031695,NM_001031695,NM_001082576,NM_001082576,NM_001082576,NM_001082576,NM_001082576,NM_001082577,NM_001082577,NM_001082577,NM_001082577,NM_001082577,NM_001082578,NM_001082578,NM_001082578,NM_001082578,NM_001082578,NM_001082579,NM_001082579,NM_001082579,NM_001082579,NM_001082579,NM_014309,NM_014309,NM_014309,NM_014309,NM_014309 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 27,27,27,27,27,27,27,27,27,27,27,27,27,27,27,,,,,,,,,,,27,27,27,27,27 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802,NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1338,1338,1338,1338,2958,1338,1338,1338,1338,2958,1338,1338,1338,1338,2958,1338,1338,1338,1338,2958,1338,1338,1338,1338,2958,1338,1338,1338,1338,2958 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001083914,NM_001290214,NM_001290215,NM_001329,NM_022802;geneb_utr_codons=13 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 MAT1A chr10 82006677 + intergenic TGOLN2 chr2 85549234 - 3utr > 1 2 124 172 0.670 0.000 6 126 0.030 0.050 127 124 34 104 CTCAGGGTAAAGGGCTATGGGCAACAGGGGACCAGACCAGGGATGAGTGGGGAGGGCACAAGGACCATTTGCCAGAATCCACCGCTTTCTGATTCCAGATTGAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAGATGCTTTTTTGGGTGCAAGTCTAACCTGTCTAGCATGAGATCTTCTTGATTTTCTGATTATTTTATGTAGCTTGAGACAAAGTGAATCAACTTCCACTTAGTTGTACCGAGCATAAAACAGAACTTGGGCTTCCTGGCAGTGAGGCCACTGTCCCATCACAG CTX 47.58 LQ 0 other 0,0,0,0 NM_000429,NM_000429,NM_000429,NM_000429 ,,, ,,, ,,, ,,, ,,, ,,, NM_001206840,NM_001206841,NM_001206844,NM_006464 ,,, ,,, ,,, ,,, 1365,,1140,1314 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_001206841:-2 geneB_transcripts=NM_001206840,NM_001206841,NM_001206844,NM_006464;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 SNHG3,RCC1 chr1 28836144 + 5utr MIR1244-3_locA,MIR1244-1_locA,MIR1244-2_locA chr12 9392192 - intergenic > 3 9 142 55 0.020 0.860 94 48 0.050 0.100 143 156 253 87 TCAGCCTCCTAAAGTGCTGGGATTACAGCTGTGAGCCACCCTGCCCGGCCACTTTTGTATGATTTCTAATGTATTTGTAATTTACCTAACAAATTGCCTAATCTCCTATGTTAATGTATTTATGAATTAAAATAAATACGACTGCAAAAAAAAAAAAAAAAAAACCTTGTAAAAAAAGCAAAAATGACAACAGAAAAACAATCTTATTCCGAG CTX 47.04 LQ 1 other NM_001048199 geneB_no_transcripts MV4_11_RNAseq_1 STX3 chr11 59548707 + intron RBM25 chr14 73572766 + coding > 0 4 120 109 0.740 0.000 0 174 0.000 0.020 132 127 1904 661 CAATCTCAAAAACAAATTTATTTATTAACCAAAGGGATAATCCTAATTAATCAAACACACTTTGAAATAGCTGCATGTAAAATGTTTATGATAAAGATAATTGAACACAGTAATGAAAAAAAAAAGAAAGAAGCTGCTTATCAAGAGCGCCTTAAGAATTGGGAAATCAGAGAACGAAAGAAAACCCGGGAATATGAGAAAGAAGCTGAAAGAGAAGAGGAAATAAGAGAGAAAAG CTX 45.24 LQ 0 NLoss 0,0,3 NM_001178040,NM_004177, ,, 2,2, ,, 115,115, ,, ,, NM_021239,NM_021239,NM_021239 452,452,452 11,11, blat,blat,blat 1354,1354,1354 2532,2532,2532 42,42, ,, QSQKQIYLLTKGIILINQTHFEIAACKMFMIKIIEHSNEKKKKEAAYQERLKNWEIRERKKTREYEKEAEREEEIREK,QSQKQIYLLTKGIILINQTHFEIAACKMFMIKIIEHSNEKKKKEAAYQERLKNWEIRERKKTREYEKEAEREEEIREK, STX3:NM_001178040[1,2]-RBM25:NM_021239[11,19];STX3:NM_004177[1,2]-RBM25:NM_021239[11,19]; geneB_transcripts=NM_021239 ,, 0,0, MV4_11_RNAseq_1 LYZ chr12 69747298 + 3utr FBXO42 chr1 16609990 + intron > 262 0 126 95 0.340 0.980 2219 1 0.080 0.000 127 116 21481 72 TTTTTTATATTAAGCCTACAACATTTTTCAGTTTGCAAATAGAACTAATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCACCTCCCG CTX 44.38 LQ 1 other NM_000239 NM_018994 geneB_no_inframe_contig_found geneB_transcripts=NM_018994;geneB_transcript_strand_disagree=NM_018994 MV4_11_RNAseq_1 GHITM chr10 85901216 - 5utr SCAMP2 chr15 75165607 - 5utr ? 1 2 231 69 0.000 0.000 15 88 0.010 0.010 231 235 1405 210 CTTTGAGTTCTTGGCCAGTTCTCCCACGCCGGATCCCAATTCTTGTTTTGGTGGCATATTCCCTGCTAGGTGTTAACAGCCATTGATTCTTCGTGATGGAATTCTTCACAACAGGGGAGGCCTTGGTGAAAGCTGGGTGGAAAACCCTAGAAGGTAGTGTCCGGAGACACACCAGCCTTGCAGCCAACATGGTGGTGGTGCACCAGGTCTACCGAGCAGATCTGAAATGCTCGGTCCCCGATCACCATGTCGGCTTTCGACACCAACCCCTTCGCGGACCCAGTGGATGTAAACCCCTTCCAGGATCCCTC CTX 44.37 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 POLR3E chr16 22309945 + intron GDI2 chr10 5807742 - 3utr > 3 11 198 44 0.000 0.000 108 44 0.150 0.140 199 210 65 5032 GTCCTGTCCTTACTCCTTCCCCGCAGGGGTCTGGAGGTCGGTACTTAGTTTCCCTACTTTAGGGATGAAAATAGGGAGGAATACCAAACCCAGACAACTCAGGTGGGTCACAGATGCCAAGCAGCTGTGGTGGGATTTGAACCTGCACAGTTTTGTTCTCGGGTCCAAGCTCTTACCCACTTAACCATACTGCCGTTTTTTTTTTTTTTTTTTTTTTTTTCTAGTGAAGTTAAACAAACATTGGGATACCGAC CTX 44.00 LQ 0 other ,,,,,,,,, NM_001258033,NM_001258033,NM_001258034,NM_001258034,NM_001258035,NM_001258035,NM_001258036,NM_001258036,NM_018119,NM_018119 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, NM_001115156,NM_001494,NM_001115156,NM_001494,NM_001115156,NM_001494,NM_001115156,NM_001494,NM_001115156,NM_001494 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, 1203,1338,1203,1338,1203,1338,1203,1338,1203,1338 ,,,,,,,,, ,,,,,,,,, ,,,,,,,,, ;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001115156,NM_001494;geneb_utr_codons=13 ,,,,,,,,, ,,,,,,,,, MV4_11_RNAseq_1 TXN chr9 113006296 - 3utr COMMD4 chr15 75614045 - intergenic > 5 0 135 81 0.490 0.660 126 1 0.170 0.010 136 135 59 0 TGTTTTCTGAAAACATAACAAGCCATTGGCTATTTAAAACTTGTAATTTTTTTAATTTAAAAAAATATAAAATATGAAGACATAAACCCAGTTGCCATCTGCGTGACAATAAAACATTAATGCTAACACTTTTTAAAAAAAAAAAAAAAAGGTAGCTGTGATACAAACCCCAGGACACCCACCCACCCAAAGAGCCAAAGAATAGTTCCTGTGACAT CTX 43.35 LQ 0 other 0,0,0,0,0,0 NM_001244938,NM_001244938,NM_001244938,NM_003329,NM_003329,NM_003329 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_017828,NM_001284378,NM_001284377,NM_017828,NM_001284378,NM_001284377 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 SLC43A3 chr11 57175142 + 3utr ANP32E chr1 150208423 - 5utr ? 1 3 247 146 0.000 0.880 7 86 0.000 0.050 247 246 750 112 GGCAGAGGATCCAGGCACATATAGGCTTCGGAGCCAAACAGGCCTAAAGAAATAGTTGACACACTTCCTCCCCCAGGTCATCTCCCCTGGAGTCAAGGGTCTGCCAAGGCTAAGTGCAAGGAGACACTTCTGTTTTGAAATAAAGAAGTTCCACATGCCTTTGCTTTGAGTCTGTGTGATATCAATCTGCTTGGCAACTGAGATTCTTTTCTTGCTGCGCAGACGTCCTTGTGTGTCTTTATTTTGTGTGTGTGTGTGTGTGTGTATGTGTGTGCGCGCGTGCGTGCGTGTGTGTGCGCGCGCTAGTGTGTGGACAAGGAGGTGGGGGCAGCTGAGTTAGAGTCCCAACTCTTGGACTCCATTTGCTATCCTCTTCTTTCTCCCCCACACCT CTX 43.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 RAB3GAP2 chr1 220428054 - intron LSM7 chr19 2328467 - coding > 1 3 183 150 0.670 0.000 43 119 0.010 0.000 190 175 52 3500 TTTTGTCATATAGCATTAACATGTATTATAAAAGTGCGTAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAGGCAATAAAACACTCTACAGCATATCCCTCTGTTGTCCATCATTGAAAACACTGGCAGCAATTTTGAAATGAAAAAAAAAAAAGAAAGAAGGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCCGGGTAAAGTTCCAGGGAGGCCGCGAAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGTGCTGGACGGCACCATTGAGTACATGCGAGACCCTGAC CTX 43.00 LQ 0 NLoss 0,3 NM_012414, , 1, , 115, , , NM_016199,NM_016199 6,6 2, blat,blat 16,16 312,312 60, , FVI*H*HVL*KCVVSKE*NHQHSKAALSTRQ*NTLQHIPLLSIIENTGSNFEMKKKKERRKKESILDLSKYIDKTIRVKFQGGREVES*RASTHSSTLCWTAPLSTCETL, RAB3GAP2:NM_012414[1,1]-LSM7:NM_016199[2,4]; geneB_blat_issues=too_many_mismatches geneB_transcripts=NM_016199 , 1, MV4_11_RNAseq_1 FEM1A chr19 4794549 - 3utr PBX3 chr9 128729368 + 5utr ? 2 1 147 120 0.790 0.000 86 6 0.150 0.000 148 138 89 647 ACCGTGGACTTTTATCTCGCTCACCAAATTCCTCACACATACAGCTCACTCCCTGTGCCCTCGGCCATCTCAGGCACCACAAAATCCTCACTGCTTGAAATTCACTTATGGAGTCCAACAAACAACTTTCTTAAAAAAAAAAAAAAAAAAAAAGCAGCGACTAATTGTGATGCATTCAGATTTCAGTATTCAGTACTGTATATTTCACCCTGTGTAATGGGGCCCCCTCTCCTTTCTCTCTTTTTGTATTGTATGCG CTX 43.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 RNASE2 chr14 21424595 + 3utr MIR6723 chr1 569040 + intergenic > 3 0 294 114 0.000 0.660 126 0 1.000 0.000 306 307 12 53 CGCGGAGACTGGGTATGCGCAGACACCAGCAAACATGTTCTATATAGTTGCATGTGACAACAGAGATCAACGACGAGACCCTCCACAGTATCCGGTGGTTCCAGTTCACCTGGATAGAATCATCTAAGCTCCTGTATCAGCACTCCTCATCATCACTCATCTGCCAAGCTCCTCAATCATAGCCAAGATCCCATCTCTCCATATACTTTGGGTATCAGCATCTGTCCCCATCAGTCTCCATACCCCTTCAGCTTTCCTGAGCTGAAGTGCCTTGTGAACCCTGCAATAAACTGCTTTGCAAATTCAAAAAAAAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGT CTX 42.84 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 STEAP1B chr7 22551424 + intergenic SPN chr16 29676306 + 3utr > 7 0 129 139 0.950 0.000 42 0 0.030 0.000 147 158 1035 719 TTAGGACACCACAGGACGCCTGAGATGTCCCTGTAATCATGTTTTTGATAAAGTCTCTGTGTCCTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAGGAGATATCAATGGTGATACCACGTTCACGCTCAGCTTTCAGCTGCCCCCTCGCTCCCATGTTTCCACCCGGCACCCTGATCCTCACCCGACTCTCCTTTTTTTTTTTCTTTTGAGACAGAGTTTGGCTTTGTCGCCCAGGCTGGAGTGCAATGCACGATCTCAGTTCACTGCAACCTCTGCC CTX 42.00 LQ 0 other 0,0,0,0 NM_001164460,NM_001164460,NM_207342,NM_207342 ,,, ,,, ,,, ,,, ,,, ,,, NM_001030288,NM_003123,NM_001030288,NM_003123 ,,, ,,, ,,, ,,, 1203,1203,1203,1203 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001030288,NM_003123;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 GAPDH chr12 6645703 + coding ORMDL3 chr17 38077900 - 3utr > 4 1 139 250 0.500 0.000 30 84 0.000 0.050 149 147 29755 143 ATATCTACCCTCCTCCCCCACACGACGGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGGGTAGACAGGTGGGGAAAAGGCCCGTGAGTCATTGTAAGCACAGGTCCAACTTGGCCCTGACTCCTGCGGGGGTATGGGGAAGCTGTGACAGAAACGATGGGTGCTGTGGTCCTCTGCAGGCCCTCACCCCTTAACTTCCTCATACAGACTGGCACTGGGCAGGGCCTCTCATGTGGCAGCCACATGTGGCGTTGTGAGGCCACCCCATGTGGGGTCTGTGGTGAGAGTCCTG CTX 42.00 LQ 1 CLoss ,,, NM_001256799,NM_001289745,NM_001289746,NM_002046 ,,, ,,, ,,, ,73,73,73 ,,, ,,, NM_139280,NM_139280,NM_139280,NM_139280 ,,, ,,, ,,, ,,, 462,462,462,462 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_139280;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16342639 - 5utr MTA1 chr14 105932863 + coding > 9 2 40 91 0.000 0.080 45 100 0.270 0.060 41 53 2961 104 CTCGGCCTTCGCAGACTCCAGGCTCTGGCAGATGTGGCCCTCCATAACAACGGCTCCCCCACCATCCTGGGCAAGCGCAGCTACGAGCAGCACAACGGGGTGGACGGCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGGGTCTGGCAAACCAC CTX 41.40 LQ 0 NLoss 3 NM_004689 575 tuple 1725 2148 geneB_no_inframe_contig_found;geneA_no_transcript_IDs_found geneB_transcripts=NM_001203258,NM_004689;geneb_utr_codons=13 MV4_11_RNAseq_1 MAN2B1 chr19 12754381 - intergenic SLIRP chr14 78174474 + coding > 0 6 96 318 0.660 0.030 1 120 0.000 0.200 102 96 260 2378 CTTCCATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCATCAACAAGATGTTGTCCTGTGCTGGGGCTGACAGGCTCCACTCAGCAGCGCGAGGTGCTGCGGCGCTGCGTAGAAGTATCAATCAGCCGGTTGCTTTTGTGAGAAGAATTCCTTGGACTGCGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCGGCCATGTCAGAAGGTGCATTTTACCTTTTGACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCAGTTTTCTTCAGAAGAAGGACTTCGGAATGCACTACAACAGGAAAATCATATTATAGATGGAGTAAAGGTCCAGGTTCACACTAGAAGGCCAAAACTTCCGCAAACATCTGATGATGAAAAGAAAGATTTTTGAGACTGCAG CTX 40.80 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001267863,NM_001267864,NM_031210 7,7,7 ,, tuple,tuple,tuple 20,20,20 324,279,330 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001267863,NM_001267864,NM_031210 ,, ,, MV4_11_RNAseq_1 CSF1R chr5 149474134 - intron MIR6723 chr1 567785 + intergenic > 4 0 223 138 0.960 0.670 123 0 0.010 0.000 224 252 1271 106 CTTATTGATTTTGCCATAACCACGCTTGTAGATTAGTTCATTTACTGACTTCAGATTGGGGTACCCCCATGCAATATATGGCTCTACAATCCTCAGCATGTTAATCGAAGCCTTGTTGAGCTTCACAAAGGTTCCATTGAAGATTTGACGAAGGCGAAGAAGCTGCAACACCTTTCGAACCTTTGGGCTCACTCCATTGATACCTCTGATTCTGATGACAAACGCCAATTTGGAGGGTAGTCCGAGTAACGTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAAAGATCGGAAG CTX 40.59 LQ 1 other NM_005211 geneB_no_transcripts MV4_11_RNAseq_1 SSTR2 chr17 71170908 - intergenic TMEM194A chr12 57450125 - 3utr > 2 2 105 142 0.840 0.000 30 66 0.330 0.020 135 134 5 261 AAATTTAAGTCTCGATGCTCCTCCGTCATAGAATTAAAAAATTAAAGAAAGCAATGCTTTAAATTTTTGTACTTTGCTGAAAATTCTTTTTCCCAGGGTCTATAAAACATTAATTTGTTTTTATATTTTACTATTTTTTTGTGTTTTTTTAGGGGAACCTATATAATTATGACCCAGTGATGTCTTTTGGTGACTTAAGCTTATGAATTCAGGTTACAATTGAGTTGATTCTAGATGGTTACTACCTTGAAAAGGATGTTGGTGCCTTATGTGACACG CTX 40.56 LQ 0 other 0,0 NM_001050,NM_001050 , , , , , , NM_001130963,NM_015257 , , , , 1335,1116 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001130963,NM_015257;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chr8 130382623 + intergenic NA chr8 130560480 + intergenic ? 9 0 48 307 0.000 0.000 804 0 0.040 0.000 48 48 129 209 ATCTGGTTTAGTCAGCATGACTATGTGTCTTCTCTCCTCAGGCCTTCCTTCCTCCTGTCCCCTTCAGTCCTGGACTGAGTTCAATGCACACATCTTGCACAGAATAGATGTTCATATATTCTTGGTTTAAGTGCCTATCAACCTTCATATAATTCCACTGGGTCTACTGAAAGATGGCAGAAGACGGACAGTCATAGTGTTTACTATGGGCCAAATCCTTCTCCCATATTTGCTCCTTTAATTTTCCCAATTCAATGAAGTAGCTCAGTGAAGTAGCTCAATGATGTAGCTCGGTGAAGTGCCCCACTTTGCAGTTGACAAGTTCTAAGGCTCAGAGTTGAAGTGACATCCGAG DEL 40.20 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 MDC1 chr6 30667680 - 3utr FARSA chr19 13033656 - coding > 4 0 125 72 0.000 0.000 180 1 0.230 0.000 126 121 109 2046 CTTTGGGGTCAGGAACTTGAAGGGATGCTTGGAGTGAGTAGATTTGAGGGTCCAGTTATGGAGTGCTACTAAAACATTTTCTTCTCTCCTGGCCTCTGGAAGCATCTTTAGCTTTGACTTTGGGCCACAAGGTGAACCTGCAGATGGTGTATGACAGTCCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCC CTX 40.16 LQ 0 NLoss 0,3 NM_014641, , 15, , , , , NM_004461,NM_004461 478,478 13, blat,blat 1433,1433 1527,1527 40, , LGSGT*RDAWSE*I*GSSYGVLLKHFLLSWPLEASLALTLGHKVNLQMVYDSPLCRLDAEPRP, MDC1:NM_014641[1,15]-FARSA:NM_004461[13,13]; geneB_transcripts=NM_004461 , 2, MV4_11_RNAseq_1 NA chr13 82264350 + intergenic CDK11B,CDK11A chr1 1575775 - coding > 10 2 40 252 0.950 0.500 79 55 0.110 0.070 41 50 466 308 CGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAGGGCGACTATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGCAGGAGCTGCCCAAGTACCTGCCGGCCCTGCAGGGCTGCTGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGC CTX 39.50 LQ 0 NLoss 0,0 , , , , , , , NM_033487,NM_033490 116,155 , tuple,tuple 346,463 1581,1698 , , , ; geneB_CDS_mapping_exception=NM_001291345:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001291345;geneB_CDS_mapping_exception=NM_001787:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001787;geneB_CDS_mapping_exception=NM_033486:-4;geneB_breakpoint_not_mapped_to_CDS=NM_033486;geneA_no_transcript_IDs_found;geneB_CDS_mapping_exception=NM_033489:-4;geneB_breakpoint_not_mapped_to_CDS=NM_033489 geneB_transcripts=NM_001291345,NM_001787,NM_033486,NM_033487,NM_033489,NM_033490 , , MV4_11_RNAseq_1 IL6ST chr5 55240542 - intron LOC153684 chr5 43043549 + 5utr > 5 2 35 171 0.970 0.000 39 70 0.140 0.380 36 36 4207 24 CAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATTTTTCTTTTTTCCTCTGTCGCCTAGGCTGGTGCAGTGGTGTCATCTTGGCTCAGTGCAGCCTCGACTTCCTGGGATCCAGCGATCCTCCCGCTTCAGCCTCTAGAGTAGCCGAGACCACAGCTTCCTACGCAGGAAACAGCCATCCACCCTCTGTGACTGGGCTTTTCCAG ITX 39.00 LQ 0 other ,, NM_001190981,NM_002184,NM_175767 ,, ,, ,, 1755,1938, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr17 14608543 + intergenic LOC101929596 chr2 38709235 - intron > 0 12 91 131 0.850 0.540 1 254 0.010 0.110 94 114 1 741 CTGGCCTCGGACACGAAGGCCCCAGAAGTGACGCAGCCCTCTATGGGCCCGAATCTTCTTCAGTCGCTCCAGGTCTTCACGGAGCTTGTTGTCCCCCCGGATATGAGGCAGCAGTTTCTCCAGAGCTGGGTTGTTTTCCAGGTGCCCTCGGATGGCCTTGTGCATGATTGTGTTCTTGCCCATCATCACCACAACCTTCCCTCGAAGCGACATGCGGATCTTCTGCATCTGCTTGTATCCCACAT CTX 38.56 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 LOC101929596 chr2 38709435 - intron RPA2 chr1 28233703 - coding > 4 0 201 83 0.750 0.650 110 1 0.020 0.000 202 204 975 1176 GGAAGCGAGAATGCAGAGTTTCCTCTGTGATATCAAGCACTTCAGGGTTGTAGATGCTGCCATTGTCGAACACCTGCTGGATGACCAGCCCAAAGGAGAAGGGGGAGATGTTGAGCATGTTCAGCAGCGTGGCTTCGCTGGCTCCCACTTTGTCTCCAGTCTTGATCAGCTGCACATCACTCAGGATTTCAATGGTGCCCCTGGAGATTTCACAGGTCACTATTGTGGGGATCATCAGACATGCAGAGAAGGCTCCAACCAACATTGTTTACAAAATAGATGACAT CTX 38.50 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001286076,NM_001297558,NM_002946 -26,78,70 ,, tuple,tuple,tuple ,232,208 525,837,813 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001286076,NM_001297558,NM_002946;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 KIAA1586 chr6 56919728 - 3utr SERBP1 chr1 67895872 - coding > 2 4 291 334 0.000 0.660 112 35 0.060 0.000 292 288 156 2403 GTTTTTATTCCATTTCTCTTTTATTTAATATAACCTCCAGGGCTTAGAACTTAGCTGAGTCCTGCTATTTTTTGCATCCTTACTTAAAGTAAAACAGTACAAAATTATAAACGGTGTTTGTTCTGTACAGAACTTCATGGAATATGTATTATGACCCACTCTAGCAAACATGGGCCAATCTCTAAAAAACTATAGCTTCTAAAACCAATCTTCAAGATTATCTTCTTAAAGAACGCCTTTTAAACAGCAACATGCTGATAAAAGTTTAACTGGCTTTCCAAAAAAAAAAAAAAGAAGCCGGCGGGGGCGGCGTTGGGGGCCCTGGGGCCAAGAGCGCAGCTCAGGCCGCGGCCCAGACCAACTCCAACGCGGCAGGCAAACAGCTGCGCAAGGAGTCCCAGAAAGACCGCAAGAACCCGCTGCCCCCCAGCGTTGGCGTGGTTGACAAGAAAGAGGAGACGCAGCCGCCCGTGGCGCTTAAGAAAGAAGGAATAAGACGAGTTGGAAGAAGACCTGATCAACAACTTCAGGGTGAAGGGAAAATAATTGATAGAAGACCAGAAAGGCGACCACCTCGTGAACGAAGATTCGAAAAGCCACTTGAAGAAAAGGGTGAAGGAG CTX 38.08 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,NM_001286274,NM_001286275,NM_001286276,NM_020931,,,, ,,,,,,,,,,,,,,,,,,, 3,4,4,4,3,4,4,4,3,4,4,4,3,4,4,4,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,, NM_001018067,NM_001018067,NM_001018067,NM_001018067,NM_001018068,NM_001018068,NM_001018068,NM_001018068,NM_001018069,NM_001018069,NM_001018069,NM_001018069,NM_015640,NM_015640,NM_015640,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640 38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112,112 1227,1227,1227,1227,1209,1209,1209,1209,1182,1182,1182,1182,1164,1164,1164,1164,1227,1209,1182,1164 95,95,95,95,95,95,95,95,95,95,95,95,95,95,95,95,,,, ,,,,,,,,,,,,,,,,,,, FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,FYSISLLFNITSRA*NLAESCYFLHPYLK*NSTKL*TVFVLYRTSWNMYYDPL*QTWANL*KTIASKTNLQDYLLKERLLNSNMLIKV*LAFQKKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEG,,,, KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018067[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018068[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_001018069[1,8];KIAA1586:NM_001286274[1,3]-SERBP1:NM_015640[1,8];KIAA1586:NM_001286275[1,4]-SERBP1:NM_015640[1,8];KIAA1586:NM_001286276[1,4]-SERBP1:NM_015640[1,8];KIAA1586:NM_020931[1,4]-SERBP1:NM_015640[1,8];;;; geneB_transcripts=NM_001018067,NM_001018068,NM_001018069,NM_015640 ,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,, MV4_11_RNAseq_1 HSP90AB4P chr15 58984633 - 3utr BAZ1A chr14 35240813 - coding > 0 4 76 136 0.800 0.000 1 188 0.000 0.020 81 80 132 269 GGAAGAGAAAGGTGAGAAAGAAGAGGAAGATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGTTCAGATGAGGACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTGATGCCAGTGACAGTGGGCGTTCTTATAAAACAGTTCTGG CTX 37.60 LQ 0 NLoss 0,0,3,3 NM_001110,NM_001110,, ,,, 2,2,, ,,, 207,207,, ,,, ,,, NM_013448,NM_182648,NM_013448,NM_182648 1069,1037,1069,1037 21,20,, tuple,tuple,tuple,tuple 3205,3109,3205,3109 4671,4575,4671,4575 26,26,, ,,, KRKVRKKRKIKMMKKNPRSKMWVQMRTPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,KRKVRKKRKIKMMKKNPRSKMWVQMRTPQSVSSVVHYLAMALFQIEQGIERRFLKAPLDASDSGRSYKTVL,, ADAM10:NM_001110[1,2]-BAZ1A:NM_013448[21,27];ADAM10:NM_001110[1,2]-BAZ1A:NM_182648[20,26];; geneB_transcripts=NM_013448,NM_182648 ,,, 2,2,, MV4_11_RNAseq_1 FAM162A chr3 122128843 + 3utr NA chr10 90899392 + intergenic > 3 0 321 89 0.010 0.720 128 1 0.240 0.010 322 326 19 0 CAGCTATCTAATGATTGCCCTGACGGTGGTAGGATGCATCTTCATGGTTATTGAGGGCAAGAAGGCTGCCCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGAAAGCTCGTCTGAAAGAGGAAGCAGCTATGAAGGCCAAAACAGAGTAGCAGAGGTATCCGTGTTGGCTGGATTTTGAAAATCCAGGAATTATGTTATAACGTGCCTGTATTAAAAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTTGCCCAAACCTGTACCATTTCCGTATTTCTGCTGTAGAAGTAGAAATAAATTTTCTTAAATAAAAAAAAAAAAAATGTGCTCCGACTAGGGGGAAAACAGTAGTTCCGATTTTTTCCCATTATTTTTATTTTATTTTCTGGTTGCCCTAGCTTCCCCC CTX 36.83 LQ 0 other NM_014367 geneB_no_transcripts MV4_11_RNAseq_1 LOC339862 chr3 18338142 - intergenic OSTF1 chr9 77761950 + 3utr > 3 1 323 76 0.000 0.760 122 7 0.060 0.010 324 310 286 676 CTTCACCTTCTGGGATACCAATAATTCAGGTATTTGGTTGCTTTATGGTGTTGCACATATCATGAAGGCTTTGTTCATTCCTTTTTTATTCTTTTTTAAAATTTTTGTCTGAGTAGGTTATTTCAAAAGACCTATCTTCAAGTTATGAGATTCTTTTTTTTGATCTAGTCTATTGTTGGAGCTTTTGAATGTATTTTGTCATTCAGTCAATGAATTCTTCAGTTTCAGAATTTGTTTGGTTCTTTTTTGTGATATCTATCTCTTTGGTAAATTTCACATTCATATTCTGAATTTTTTTTGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAATGCTTTACCTCAATGGTTGAGATATTTTGAATGGATTTTTCAAGGG CTX 36.28 LQ 0 other 0 NM_001257177 NM_012383 645 geneB_no_inframe_contig_found geneB_transcripts=NM_012383;geneb_utr_codons=13 MV4_11_RNAseq_1 MIR6723 chr1 569756 + intergenic MON1B,SYCE1L chr16 77234644 + intron > 0 3 74 142 0.660 0.000 1 174 0.000 0.250 76 83 132 53 AGAAATCGCTGTCGCCTTGATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAACAAAAAGAAAAAAATCTCCCAAGGCAGTCATGCATTTGTATGCCACTAGCATTTTTTTGTTATAGAAATATTCAAAGTGTACCAACGTAGAGAAAATAGCTTTAAACAAAGCCCATGTG CTX 35.88 LQ 0 other NM_001129979 61 729 geneB_no_inframe_contig_found geneB_transcripts=NM_001129979 MV4_11_RNAseq_1 LOC158960 chrX 153656679 + 3utr PRPF3 chr1 150316911 + coding > 5 0 371 74 0.020 0.480 113 0 0.120 0.000 372 375 112 485 GTTCCTTCTGGGGCTGTGAGGGAAAGCCAGCTCCAGGCCTGTCTTCTGGCTTCTTCCGGTGGTTCCCAGCAATGCTCCGTGTTCCTTGGCTTGCAGAGGTGTCATTCCAATCTCTGCCTTCAGCTGCGTGCAGTGCTCTCCTCCCTGTGTCTGTCTCTTTTTCTCCTCCTGTATCAGGGAGGGTCCATCTGCAGGAAAAAGACACCACTTTTGCAATTTTGATGAAAAGGATTAAAACAGGGATTGGCCGGGTGCGGCGATGCGCGCCTGTAGTCCCACTTTTCCGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCGGGGACTCGAGACCAGCCTGGCCAACATAGCTAGACCCCGTCTCTAAAGAAAAAAAAAGACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATCAAAAAGACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAG CTX 35.64 LQ 0 NLoss 3,0 , , , , , , , NM_004698,NM_004698 510,510 , tuple,tuple 1528,1528 2052,2052 , , , ; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_004698 geneB_transcripts=NM_004698 , , MV4_11_RNAseq_1 LINC01500 chr14 59261740 + intergenic DEFB116 chr20 29899210 - intergenic > 5 0 312 74 0.670 0.810 295 1 0.440 0.010 313 310 42 0 AACGAAGTGGTAACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCACCTCGGGCACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGATGTGCGCATTGACACCAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAATAAGCTATATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAAGATTCACCAAATAAGCTATATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGA CTX 34.33 LQ 0 other 0 NM_001037731 geneB_no_transcripts MV4_11_RNAseq_1 RALGAPB chr20 37207188 - 3utr CALR,MIR6515 chr19 13054904 + 3utr ? 0 53 72 134 0.000 0.000 1 300 0.000 0.320 72 78 76 1520 CTTGGCAACATACTGAAATTCATACAAACTGTATATATGATTTCAAGCAAATAATGATACTGCTTATTTTTTTTTTTTTTTTTTTTTTAAACTGGTATTTTATCTTTGATTCTCCTTCAGCCCTCACCCCTGGTTCTCATCTTTCTTTATCAACCTCTTTTCTTGCCTCTCTCCCCTTCTCTCCTCTCTTCGCCCCCCTCCACCCTTGGGGGCTG CTX 33.47 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 SRSF10 chr1 24334303 - intergenic MFHAS1 chr8 8642907 - 3utr > 0 3 90 236 0.830 0.000 1 190 0.010 0.230 97 96 0 29 ATGAGGAAAGCTGCTGCCAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAAAGAACAGCTTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTCTCTGTTAGCCCATGGATTAAGTGTTGGTTCATAGAGATTGCCAATAATCAGAAAGAACCTTAAATGTGCATTTAAGACAGTGTCCCTTCCCTTCTTTTCAATGAAGGTCCCTGCCTATATAAATCATCTGGCACGCTGGTGGGAAATCCTTTGCTCTTCCAACGTGTTATTAGTGCTGGGCAGAGATGGGGCACACTCAGGGGCCAAAGAGGACAAAAAGTC CTX 33.30 LQ 0 other 0,0,0,0,0,0,0,0 NM_001300937,NM_001191009,NM_001300936,NM_054016,NM_006625,NM_001191005,NM_001191007,NM_001191006 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_004225,NM_004225,NM_004225,NM_004225,NM_004225,NM_004225,NM_004225,NM_004225 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 3159,3159,3159,3159,3159,3159,3159,3159 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_004225;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 HNRNPU chr1 245021541 + coding ZNF12 chr7 6730736 - coding ? 0 4 73 134 0.000 0.000 1 179 0.000 0.080 73 73 2305 74 CGGGAACAGTGGCCGTCCAGCAAGAACTTCCTTACTGATTTTGAAGGCAACGCCAAGATCTTGTCCATTCTTATGCTTCTCTCAGATGTCCTATCTCACTATACATCATCGAATTCATTCAGGAGAGAAACCCTTTGAATGTAATGAGTGTGGAAAAGCCTTCTCTCGGATGTCATACCTCACTGTACATTATAGAACTCATTCAGG CTX 32.93 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 SIVA1 chr14 105225994 + 3utr SRGN chr10 70864279 + 3utr > 2 1 179 72 0.000 0.000 144 11 0.830 0.000 180 179 6 102344 CGAGACCTGAGGCTGGCTCAAGCCGGCTGCCTTCACCGGGAGCCACGCCGTGCATGGCAGCCTTCCCTGGACGAGCGCTCGGTGTTCACACTGAACTGTGGGGTCGACGGGAGGGGTGCCTTTTACATGTTCTATTTTGTATCCTAATGACAGAATGAATAAACCTCTTTATATTTGCAAAAAAAAAAAAAAAAATAATGAAACACAGTGAATTTGTAGAGTGGGGGTATTTGACATATTTTACAGGGTGGCATGTCATAGATAATATTACCTTTGACTGTTTTTACAGAGGGAGTGGGAGAGTGTCTCGGCTAAGCAGTATTCTGTC CTX 32.13 LQ 1 other , NM_006427,NM_021709 , , , , , , NM_002727,NM_002727 , , , , 477,477 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 , , MV4_11_RNAseq_1 HMGB2 chr4 174252852 - 3utr ZNF131 chr5 43175822 + 5utr > 4 14 375 45 0.000 0.000 100 32 0.080 0.250 376 379 276 451 CTATCCTTTAATGATGCGTGTGGAATGTGTGTGTGTGCTCAGGCAATTATTTTGCTAAGAATGTGAATTCAAGTGCAGCTCAATACTAGCTTCAGTATAAAAACTGTACAGATTTTTGTATAGCTGATAAGATTCTCTGTAGAGAAAATACTTTTAAAAAATGCAGGTTGTAGCTTTTTGATGGGCTACTCATACAGTTAGATTTTACAGCTTCTGATGTTGAATGTTCCTAAATATTTAATGGTTTTTTTAATTTCTTGTGTATGGTAGCACAGCAAACTTGTAGGAATTAGTATCAATAGTAAATTTTGGGTTTTTTAGGATGTTGCATTTCGTTTTTTTAAAAAAAATTTTGTAATAAAATTATGTATATTAAAAAAAAAAAAAAAAAAATCCACACCCATGTGCCTTCTCAAAACCAAC CTX 32.00 LQ 0 other ,,,,, NM_001130688,NM_001130688,NM_001130689,NM_001130689,NM_002129,NM_002129 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001297548,NM_003432,NM_001297548,NM_003432,NM_001297548,NM_003432 ,,,,, ,,,,, ,,,,, ,,,,, 1872,1770,1872,1770,1872,1770 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001297548,NM_003432;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 NUDT21 chr16 56463371 - 3utr RAB2A chr8 61531139 + coding > 0 3 151 218 0.000 0.000 0 32 0.010 0.010 152 164 1299 1659 CTCATTTCAAGCAGTTTTCTTTTGTTCAAATCGTGATTAGAAACCTAATACTGTAATTTGATTTGAGCCATAAAACACATTTTAATATTAGCTTGTATTATAGTTATTAAGCTTGTTTTTGTGGAAAAAAACTTACTAAAACCTAGGTAACTCAATGTAGAAGAGGCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATTCAAGAAGGAGTCTTTGACATTAATAATGAGGCAAATGGCATTAAAATTGGCCCTCAGCATGCTGCTACCAATGCAACACATGCAGGCAATCAGGGAGGACAGCAGGCTGGGGGCGGCTGCTGTTGAGTCTGTTTTTACTGTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTC CTX 32.00 LQ 0 NLoss 0,0,0,0 NM_007006,NM_007006,, ,,, 7,7,, ,,, ,,, ,,, ,,, NM_001242644,NM_002865,NM_001242644,NM_002865 135,159,135,159 6,7,, tuple,tuple,tuple,tuple 403,475,403,475 567,639,567,639 55,55,, ,,, LISSSFLLFKS*LET*YCNLI*AIKHILILACIIVIKLVFVEKNLLKPR*LNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC*VCFYCLAAQRGLLTYSF,LISSSFLLFKS*LET*YCNLI*AIKHILILACIIVIKLVFVEKNLLKPR*LNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC*VCFYCLAAQRGLLTYSF,, NUDT21:NM_007006[1,7]-RAB2A:NM_001242644[6,7];NUDT21:NM_007006[1,7]-RAB2A:NM_002865[7,8];; geneB_transcripts=NM_001242644,NM_002865 ,,, 0,0,, MV4_11_RNAseq_1 NA chr11 39801044 - intergenic NA chr11 39692361 - intergenic ? 12 12 120 54 0.000 0.000 243 630 0.800 0.480 120 120 14 24 TCTGAAGTTTTGGAGGCTAGAAGTAAAGAAGTCAAGGTGTTGTAAGGGGAGTGCTGTCACTAAAACAGGTTATTTGATAATTATCAAGCACTGTTCCAAGAATGAGGATTTCAGTATTAGGAATTCAGGAGCAGTTTGGTTTGACAGTTCTGATTCTAGGATTTTCATGAGGT DEL 31.50 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr13 82264369 - intergenic MLF2 chr12 6857564 - 3utr > 4 2 48 212 0.890 0.000 31 96 0.010 0.020 49 48 539 1031 CTCTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCCACCCTTTTCCTTCTTTAATCTCCTGGTTTACCATTGATGACTTCGCCTCTGCATCTACTGACTTGATTTTTCATTCTGCCACTCCATCTTCAAACCCCCTCACCTTTCCCATCCTACTCCTGCCATGCATTGAAGGGTCAATGCATTTTGGGGTGAGCTCTGGGTTTAGGGGCCCCCTCCATCCCTCAGCTACCCTGGATCTTTGCCCACCTCTC CTX 31.00 LQ 0 other NM_005439 747 geneB_no_inframe_contig_found geneB_transcripts=NM_005439;geneb_utr_codons=13 MV4_11_RNAseq_1 KCNH1 chr1 211347004 + intergenic G6PD chrX 153759828 - 3utr > 0 3 88 118 0.890 0.000 1 281 0.000 1.000 94 94 18 51 GAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTAGTCTTGTTTGACAAAGCTACCTATGATAAACTCTGTAAGGAAGTTCCCGAGAGAATCTGCCTGTGGCCTTGCCCGCCAGCCTCAGTGCCACTTGACATTCCTTGTCACCAGCAACATCTCGAGCCCCCTGGATGTCCCCTGTCCCACCAACTCTGCACTCCATGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCA CTX 30.91 LQ 0 other 0,0,0,0 NM_172362,NM_172362,NM_002238,NM_002238 ,,, ,,, ,,, ,,, ,,, ,,, NM_000402,NM_001042351,NM_000402,NM_001042351 ,,, ,,, ,,, ,,, 1638,1548,1638,1548 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_000402,NM_001042351;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 PIK3AP1 chr10 98510028 - intergenic RWDD1 chr6 116911498 + coding > 3 2 86 199 0.880 0.490 22 162 1.000 0.010 87 82 38 1091 CCACGATGGCCGCCAGGCGGCCCAGGAGATGGCCTCGACCATCAAGCACCAGGACCTGCACCTCCGCCATCTTCGGCAGCCTCTTGGAAATTAAAAAGAAAAGGATGAAAGAAGAAGAACAAGCAGGAAAAAATAAATTAAGTGGGAAACAACTATTTGAAACAGATCATAATCTTGACACATCTGATATCCAGTTCTTGGAGGATGCTGGAAACAACGCGGAGGTAGATGAGTCTTTGTTCCAAGAAATGGATGACTTGTAGCTGGAGGATGATGAAGAT CTX 30.66 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001007464,NM_015952,NM_016104 64,160,64 ,, blat,blat,blat 190,478,190 444,732,444 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001007464,NM_015952,NM_016104 ,, ,, MV4_11_RNAseq_1 MTRNR2L8,MIR4485 chr11 10530230 + 5utr KDM5A chr12 394337 - 3utr ? 0 3 87 67 0.760 0.110 1 254 0.010 0.090 96 85 3 108 GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGAACGCTTTCTTAATTGGTGGCTGCTTTTAGTATTAATACATTGGTGTGCTAACAGGGCATATAGGATGTGGCTTTTGTCCAGCTGA CTX 30.49 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 STXBP3 chr1 109352125 + 3utr MIR3134,PTBP3 chr9 115044953 - intron > 3 0 83 72 0.000 0.000 136 1 0.750 0.000 84 80 8 90 TTTAAAGAACACAATTTTATATAATTTTGAAATCATGTATGTTTAAATTAGAAAACCAAAAATCATGAACATTCTAAGAGAAAAATTTCCCAAATAGTAAAAAAAAAAATAAAAATAAACTTAACCCATTGATCAAAGAAGTTGTCACAAG CTX 30.35 LQ 2 other ,,,,, NM_007269,NM_007269,NM_007269,NM_007269,NM_007269,NM_007269 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001163788,NM_001163790,NM_001244896,NM_001244897,NM_001244898,NM_005156 ,,,,, ,,,,, ,,,,, 35,128,4,35,137,119 1575,1668,1374,1644,1677,1659 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001163788,NM_001163790,NM_001244896,NM_001244897,NM_001244898,NM_005156 ,,,,, ,,,,, MV4_11_RNAseq_1 NA chr2 138584529 - intergenic NA chr2 138476986 - intergenic ? 7 7 93 89 0.000 0.000 290 310 0.780 0.540 93 93 8 12 AAAGCTCACAAGCAATGGCCCTTCTCAAAGGAATTAATGAATAGGAACAGTAAGGAATGACTAAGAGGGTCTTCTTGTGGAGACAAATGATTGAGATGTACCAGTGCTATTTACTCAGAGAGAAAAGGCCATGTGAAGATACAGTGAGAAGGCGGCCATATGCAAGCCAAGGAGAGGAGCC DEL 30.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr8 130560480 - intergenic LINC00977 chr8 130229652 - 3utr > 5 5 307 77 0.000 0.000 154 146 0.020 0.170 307 307 209 39 CTCGGATGTCACTTCAACTCTGAGCCTTAGAACTTGTCAACTGCAAAGTGGGGCACTTCACCGAGCTACATCATTGAGCTACTTCACTGAGCTACTTCATTGAATTGGGAAAATTAAAGGAGCAAATATGGGAGAAGGATTTGGCCCATAGTAAACACTATGACTGTCCGTCTTCTGCCATCTTTCAGTAGACCCAGTGGAATTATATGAAGGTTGATAGGCACTTAAACCAAGAATATATGAACATCTATTCTGTGCAAGATGTGTGCATTGAACTCAGTCCAGGACTGAAGGGGACAGGAGGAAGGATAAGTCAATTGAGCTTCACTTCTCTAATTGAAATCACCGTGCTGATGGAGTCTGTCTGTGGAAATGAAAGGTGG DEL 30.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36811638 + intergenic ? 8 8 148 35 0.000 0.000 126 594 0.210 0.220 148 148 37 35 CTTATAACAATAAATATTTATTTATTTAGCACATGAAAAAAACAGACATGGGTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGTATGCATCAGACACTGCTTAAGGTATTTGTGATCC DEL 29.70 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 FNTA chr8 42940928 + 5utr TOMM20 chr1 235275038 - 3utr > 3 5 131 79 0.680 0.750 115 16 1.000 0.000 134 140 12 2258 ACAGTTTGGTTAAGTAAGCAGGGAATACAGTCGTTCCATCCGAGCTGGTCTGCACACTCACATTATCTTGCTATCACTGTAACCAACTAATGCCAAAAGAACGGTTTTGTAATAAAATTATAGCTGTATCTAAAAACAAAAAAAAAAAAAAGTATAGGAGAAACTGAAGAATGTACACTTTTTTAGAGGGCACATTTTGCTGTAAATCTGGAAATTTG CTX 28.75 LQ 0 other NM_002027 NM_014765 438 geneB_no_inframe_contig_found geneB_transcripts=NM_014765;geneb_utr_codons=13 MV4_11_RNAseq_1 WAC-AS1 chr10 28812516 + 3utr GDI2 chr10 5807742 - 3utr ? 4 11 136 127 0.750 0.000 14 174 0.050 0.140 138 138 143 5032 ACAAAAAGTAATTTCAAAGAGTTAAGATTTCTTCAGCAAAATAGATGATTCACATCTTCAAGTCCTTTTTGAAATCAGTTAATATTATTCTTTCCCCATTTCCATCTGAATGACTGCAGCAATAGTTTTTTGTTTTTTTTTTTTTGTGAAGTTAAACAAACATTGGGATACCGACACAGACAACTTGAGACAGTTTTTTTAATCTTTTAATCAGTGTAGCTATGTTCTTCTGCTGGTCAACAGCTGGATCCATACAGGTTGTGTGGCCTCTGTTC ITX 28.75 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 EIF2S3 chrX 24073067 - 5utr DNAJA1 chr9 33029883 + coding > 1 2 147 135 0.490 0.510 58 22 0.330 0.000 148 150 30 1905 GTTAATTGTGGCTTGTCTGCTGATAACTTCATGTGAAAGTGGCGTCAACTTGGTAACATCCAAGGTGGTGAGATCCTGACGCGAAAGATGCGGCTGCCCTAGAGTCACTCCAGCTTCTCCGCCCGCCATGTTGCCAAAAGAGGAAGGAGAGGTAAAAATGTTGTACATCAGCTCTCAGTAACCCTAGAAGACTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATGTGATTTGTGACAAATGTGAAGGTAGAGGAGGTAGGAAAGGAGCAGTAGAG CTX 28.42 LQ 0 NLoss 0,0 NM_001415, , 1, , , , , NM_001539,NM_001539 104,104 4, tuple,tuple 311,311 1194,1194 50, , VNCGLSADNFM*KWRQLGNIQGGEILTRKMRLP*SHSSFSARHVAKRGRRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGRKGAVE, EIF2S3:NM_001415[1,1]-DNAJA1:NM_001539[4,9]; geneB_transcripts=NM_001539 , 0, MV4_11_RNAseq_1 LARP4B chr10 857477 - 3utr ARHGDIB chr12 15114521 - 5utr > 0 5 93 292 0.000 0.020 1 28 0.000 0.330 99 92 102 993 TTTTATTTAAACTTGAAAATGACTTTGCCTTAACTTTTGTATAAGACAGCTTAGAGTCCATGGAGCCCGGCCCTGGGTTGGCGTTCAGAAGTCAGAGTTGAGAGACAGAGGCACCCCGGACAGAGACGTGAAGCACTGAATAAATAGATCAGAATGACTGAAAAAGCCCCAGAGCCACATGTGGAGGAGGATGACGATGATGAGCTGGACAGCAAGCTCAATTATAAGCCTCCACCACAGAAGTCCCTGAAAGAGCTGCAGGAAATGGACAAAGATGATGAGAGTCTAATTAAGTACAAGAAAACGCTGCTGGGAGATGGTCCTGTGGTGACAGATCCGAAAGCCCCCAATGTCGTTGTCACCCGGCTCACCCTGGTTTGTGAG CTX 28.00 LQ 0 other 0,3 NM_015155, , 18, , , , , NM_001175,NM_001175 -20,-20 1, tuple,tuple , 606,606 33, , FYLNLKMTLP*LLYKTA*SPWSPALGWRSEVRVERQRHPGQRREALNK*IRMTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCE, LARP4B:NM_015155[1,18]-ARHGDIB:NM_001175[1,6]; geneB_transcripts=NM_001175;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 WDR47 chr1 109535075 + intron CLN6 chr15 68500360 - 3utr > 6 1 192 204 0.940 0.000 28 83 0.050 0.000 193 204 1243 258 AGCAGCCTGAGGTGATCTGTGAAAATGGGTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGTGTACCATTTGCGTGGATTCGTGTGTGTGTGTGTGTCTTGTATATGTGTGCGCAGAGTGCATCATTTTCAGACTCTACTATTTCCGTCAAGTTTCTGTTTGATTTGGATCATCTCAGGATCGGATTCTGTTTTAGAGTGTTTCTGGGCCAGGATCCGGGCCCCTGCCCTCCTCTGCACCTGACCACACTCCCTACTCAGGGCTAGTCTGTTCT CTX 28.00 LQ 0 other ,, NM_001142550,NM_001142551,NM_014969 ,, ,, ,, ,, ,, ,, NM_017882,NM_017882,NM_017882 ,, ,, ,, ,, 936,936,936 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_017882;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 G6PD chrX 153763469 + coding PI4KA chr22 21073034 - coding ? 3 0 155 85 0.000 0.660 164 1 0.020 0.000 156 154 207 98 TGGACAGCCGGTCAGAGCTCTGCAGGTCCCTCCCGAAGGGCTTCTCCACGATGATGCGGTTCCAGCCTATCTGGCTCATGCAGGACTCGTGAATGTTCTTGGTGACGGCCTCGTAGACGGTCGGGGGCAAGGCCAGGTAGAAGAGGCGGTTGGCCAGCGGGAGTTTGATTTCTTTAACAAGATCACCAACGTGTCGGCTATCATCAAGCCCTACCCTAAAGGCGACGAGAGAAAGAAG CTX 27.88 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 CHCHD3 chr7 132720544 + intron MROH6 chr8 144654223 - coding > 2 2 125 107 0.690 0.000 24 88 0.000 0.250 126 131 975 24 GAGTACTTTCCCGCAGCTCCTCATTGCTCACATAGTAGGCAATGGCGTTGCTCTCAAACACACAGAATCCATCATCACCCTCAAATGCTGGGACCTTGCCGGCAGGAAATTTGCGGAGAAATTCAGGGGTGCGGTTGGAGGACCAGGTGCATGCTCTGGTGCGTGGGCTGCTGGCGCAGGTGCCCAGCCTAGCGGAGGGGAGGCCCTGGAGGGCGGCCCTGCGAGTGCTGAGCGCAC CTX 27.28 LQ 0 NLoss 0,3 NM_017812, , 2, , , , , NM_001100878,NM_001100878 143,143 2, blat,blat 427,427 2160,2160 41, , VLSRSSSLLT**AMALLSNTQNPSSPSNAGTLPAGNLRRNSGVRLEDQVHALVRGLLAQVPSLAEGRPWRAALRVLSA, CHCHD3:NM_017812[1,2]-MROH6:NM_001100878[2,14]; geneB_transcripts=NM_001100878 , 2, MV4_11_RNAseq_1 LINC00273 chr16 33963668 - intergenic TKT chr3 53264605 - coding > 0 3 90 245 0.800 0.040 1 121 0.010 0.020 94 103 0 1582 CCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCAGGCACTGGCCAAGCTGGGCCATGCCAGTGACCGCATCATCGCCCTGGATGGGGACACCAAAAATTCCACCTTCTCGGAGATCTTCAAAAAGGAGCACCCGGACCGCTTCATCGAGTGCTACATTGCTGAGCAGAACATGGTGAGCATCGCGGTGGGCTGTGCCACCCGCAACAGGACGGTGCCCTTCTGCAGCACTTTTGCAGCCTTCTTCACGCGGGCCTTTGACCAGATTAGCATGGCCGCCATCTCCGAG CTX 25.16 LQ 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001064,NM_001135055,NM_001258028 325,325,333 ,, tuple,tuple,tuple 975,975,999 1872,1872,1896 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001064,NM_001135055,NM_001258028 ,, ,, MV4_11_RNAseq_1 ARFGAP3 chr22 43172517 - intergenic CHKB-AS1 chr22 51030552 + intron > 5 2 290 143 0.940 0.530 47 51 0.100 0.330 301 301 99 8 CTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAGCAAGGAATTTAATGCAGAAGTACATCGGAAGCACATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGATGAAGATGCTTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTAACTCCAGACATGATGGAGGAGATGTATAAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAAAAAGAAGAGATGGAATGGAGCAGAGGAAATATTTGAAGAGATAATGGCTATGAAATTTCTAAACTAATGAAAGTCACATAATTGAGAAATTCATATAAATTTATATAATTGAGAACCTCATGCAGAAAAAAATACAAAATAAACC ITX 25.15 LQ 0 other 0,0 NM_001142293,NM_014570 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 EIF5 chr14 103807693 + 3utr TMBIM4 chr12 66531194 - 3utr > 1 4 43 143 0.000 0.000 25 131 0.010 0.060 43 73 560 765 CATTTATACAGTTATAAAAATAAAGGTTTGATTTTGGTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTCTTCCTAAATTAGCCACGCATAGCGGTTCGTTTGCAATTCAAAAATAATTTTATGAGTAGATAAGAATATCAGTTTACCGTTGTCTAGTGATTTTATCTAAATTTTCCCTGAATTATTAAGTA CTX 25.00 LQ 0 other ,,,,,,, NM_001969,NM_001969,NM_001969,NM_001969,NM_183004,NM_183004,NM_183004,NM_183004 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001282606,NM_001282609,NM_001282610,NM_016056,NM_001282606,NM_001282609,NM_001282610,NM_016056 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, 858,489,624,717,858,489,624,717 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001282606,NM_001282609,NM_001282610,NM_016056;geneb_utr_codons=13 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 HNRNPU chr1 245017232 + 3utr KDM5B chr1 202696720 - 3utr ? 4 2 122 129 0.520 0.000 26 104 0.000 0.040 144 144 3197 191 AGACGTGTGCTCTTCCGATCTCTTCTACATACACTCCATCTTCTCTATCTTAGTTCCAAGTTTTAGTTTTCAATCCCAATTATACCAATTCCATTGTTATTTTAAGAAAAAACCTTCCCAGTTATTGTCAGAAACTATGATTTAGCTTACCTTTTCCTATTCTGTTGCCAATTTTTGTTTTCCCCACATTCTATAGCCATAAACCTGAAGATGAGTAAAACTGGTGGGTCTTTAATAAAACAACAACAAAAACAGCAGTTTGTGATATAGCAG ITX 24.96 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12264469 + intergenic FBXW5 chr9 139835788 - coding > 0 4 143 141 0.870 0.000 0 192 0.060 0.040 156 154 41 372 CTTCCGATCTGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGCCACTACAACATCTGTCTG CTX 24.96 LQ 0 NLoss 0 NM_018998 458 tuple 1372 1701 geneA_no_transcript_IDs_found geneB_transcripts=NM_018998 MV4_11_RNAseq_1 GPX1 chr3 49394622 - 3utr NA chr3 96336032 + intergenic > 18 4 130 28 0.060 0.950 204 26 0.360 1.000 131 202 2866 4 ATCGATGAGGGTCGTTCCTCTAAACCTACAAGGGAGGAGCAACTGATCTTACGGAAAGTACCACCTCGAGATGGGTGCTGGTCCTGTTGATCCCAGTCTCTGCCAGACCAAGGCGAGTTTCCCCACTAATAAAGTGCCTGGTGTCAGGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCAC ITX 24.44 LQ 0 other , NM_000581,NM_201397 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 OTULIN chr5 14652962 + intergenic ATG12 chr5 115166718 - 3utr > 2 3 119 151 0.950 0.000 16 166 0.100 0.020 121 121 130 427 CACCATTCCAACCAGAAATTGGCACAAATGCTACTGTGTCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGCATCTTTTTGAGTGTTTCATAATGCATTTTCCAACTTGAAAACAATAATTGAAAAATAGCCTTATTGTATATTTTATGCCATGACTAAAAGTGCCATTTTTACTGATGCTATTAGACTGATAATTTCTTGAAGTGAAATTTAACCT ITX 24.30 LQ 0 other 0,0 NM_138348,NM_138348 , , , , , , NM_001277783,NM_004707 , , , , 225,423 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001277783,NM_004707;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LONP1 chr19 5691845 - 3utr LINC00987 chr12 9392589 - intergenic > 3 0 134 101 0.000 0.750 97 0 0.300 0.000 154 160 507 62 ACGTGTGCTCTTCCGATCTGAAGGACTTCTACGACCTGGCAGTGGAGCCACCGAGCGAGCAGCTCGGTCCAGTGACCCAGATCCCAGGGACCTCAGTCGGCTTAATCAGAGTGTGGCATAGAAGCTATTTAATGATTAAAGTCATTTGCAGTAAAAAAAAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACATTCGAGCAGAGATGCCCGCCCCCCCACCGTGGGCGCTGCCATCACCAGGTGACAGTCGAATGCTGGGAGC CTX 24.25 LQ 1 other ,, NM_001276479,NM_001276480,NM_004793 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12264975 + 5utr FANCL chr2 58386936 - coding > 5 1 146 147 0.890 0.000 14 92 0.600 0.030 147 153 101 451 ACTATAATCTCAAAGGAGAAAAAAAACCTTGTAAAAAAAGCAAAAATGACAACAGAAAAACAATCTTATTCCGAGCATTCCAGTAACTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCAGAGCCAATTACCTTAAAAATGTCTGGAAGGGAACACTGAAATAAGAATACAACATTTCGGTGAAGAGCTGGAAACTTAAAAAATTATCAAAAGGAATTTTGGTATCATCTTCAGAGAAAAAATAAAGCAAGAAATACTAACATCAAAAG CTX 24.12 LQ 0 NLoss ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, NM_001114636,NM_001130480,NM_001130481,NM_001130482,NM_001130483,NM_001288836,NM_001288837,NM_001288838,NM_001288839,NM_006296,NM_018062 ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, 1108,,,,,,,,,,1093 1143,,,,,,,,,,1128 ,,,,,,,,,, ,,,,,,,,,, ,,,,,,,,,, ;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001114636,NM_001130480,NM_001130481,NM_001130482,NM_001130483,NM_001288836,NM_001288837,NM_001288838,NM_001288839,NM_006296,NM_018062;geneB_transcript_strand_disagree=NM_001130480;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001130481;geneB_transcript_strand_disagree=NM_001130482;geneB_transcript_strand_disagree=NM_001130483;geneB_transcript_strand_disagree=NM_001288836;geneB_transcript_strand_disagree=NM_001288837;geneB_transcript_strand_disagree=NM_001288838;geneB_transcript_strand_disagree=NM_001288839;geneB_transcript_strand_disagree=NM_006296 ,,,,,,,,,, ,,,,,,,,,, MV4_11_RNAseq_1 C6orf211 chr6 151791236 + 3utr LINC00987 chr12 9392597 - intergenic > 6 0 144 145 0.000 0.850 160 0 1.000 0.000 145 140 11 61 TTTATATTCTTACACATTTTATTGGTCATTGTCACAGATAGTAAATACTAAAAATTTCAGGTCAGTTTGTTTTGAAACTGAAATTGGAAATAAATCTGGAAATGTTTTGTTGCACTAAAATAATAAAATGAATTGTACTGAAAAGTTAAACTAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGCAGATGACACGCGCTCTCCACAGA CTX 24.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 PRTN3 chr19 848175 + 3utr LINC00273 chr16 33963114 - intergenic > 3 0 135 93 0.000 0.830 134 1 0.100 0.010 136 148 1728 0 TCTTTGGACAGTAGCAGCTTTTCCCCAATCACTGTGGCGTCTGGGACGGCTCCTCCCGTCCCGCCACTCTCCCTTCCACGGGGCTCCGGGAGAGAGGCCGGCCCTGCACCTCACCCCACCGTGACCTCAATAAACGTTGAAACTCCATGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTT CTX 23.78 LQ 0 other NM_002777 geneB_no_transcripts MV4_11_RNAseq_1 SNHG6 chr8 67834169 - 3utr LINC00987 chr12 9392605 - intergenic > 8 0 354 79 0.000 0.890 213 0 0.260 0.000 355 368 110 43 AAAGCCTTTGAGGTGAAGGTGTATGAAAGTCATCATAACAGATGTTTTCCAAAAACTTGTAGAAGGTTGTGAAAAAACTACTAGGATCACGCGGCATGTATTGAGCATATAGGTTGCTGTAGATGAATGTTCTTAGCTGTCATGTTTAAAAATACTTCTGCTTCGTTACCTCAAGTGTGGCATGCAGCATTTTGGAAGGAAAATTGAAGACGTGTTCAAGAAAACATGAACAGAAGCAAATGATGAAAATCAGCATTTTACTTGATGTTGATAACATCACAATAAATTATGGAGAAAAATACATATTTGGCTAACTTTTAATTGCTGAACAATAAAGTGTTTTCTTTTAAATCAAAAAAAAAAAAAATAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAG CTX 23.43 LQ 0 other NM_173518 geneB_no_transcripts MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36921062 + intergenic ? 0 15 98 207 0.000 0.000 0 448 0.000 0.440 98 98 37 33 GGTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGCTTCCGTCCATGGGTGTCAGTGCAAATTCTCTGGGTTCACTTCTCCATAGATTTTTTTGTTATTTTCAAAAGCTTGTCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCTGGACGAGTTTCTGCTTGAGCACCAGCGCGGN DEL 22.40 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 ROMO1 chr20 34288899 + 3utr LRRFIP1 chr2 238674081 + 3utr > 1 2 60 407 0.000 0.000 22 124 0.270 0.040 60 63 119 574 AACTACATCTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAAGAAAGTCTTTGACTAAAAAAAAAAAAAAAAAAAAAAAAGTTTTTGAACCTTAAAATACTTTGTTTGAATTTCTAATCATCATTCAAAAGAGCAGTAAAAAATGGTTACTTGTTCTTGTACAAGCTACTAATTAGACTATAGTAGGATATTTTAAAGAGCTGAATCACTTTTGGTATTTTGGTATAAATATTTTCATTTGTTATGTCCCAGTATATTCTTACTGGAAAATTCTTGTTTTGATCTGCCTGAAGAAAATATCTGTTTTCTATATAAAAAAATTTTTTAAAATAATTGTAAAGTTAGATTTAAAATTGTAAAATATAAAATCACAAAGGAATGTACCTTATGAATGTTGTTGACATTTTATGAAATTATGTGGATTCATATTACTGTTACAAGATAGAATTGAATGCAAAAAGACC CTX 22.07 LQ 2 other ,,,, NM_080748,NM_080748,NM_080748,NM_080748,NM_080748 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735 ,,,, ,,,, ,,,, 1460,722,,, 1923,1185,2427,2259,2355 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001137550,NM_001137551,NM_001137552,NM_001137553,NM_004735;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 LOC100132077 chr9 97109476 - intron FBXW5 chr9 139835788 - coding > 0 4 86 141 0.890 0.000 1 196 0.000 0.040 89 89 2 372 ATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGCCACTACAACATCTGTCTG INS 21.56 LQ 0 NLoss 0 NM_018998 458 tuple 1372 1701 geneA_no_transcript_IDs_found geneB_transcripts=NM_018998 MV4_11_RNAseq_1 LOC441454 chr9 99672729 + 5utr FBXW5 chr9 139835788 - coding > 0 4 85 141 0.890 0.000 1 196 0.000 0.040 89 89 15 372 ATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGCCACTACAACATCTGTCTG ITX 21.56 LQ 0 NLoss 0 NM_018998 458 tuple 1372 1701 geneA_no_transcript_IDs_found geneB_transcripts=NM_018998 MV4_11_RNAseq_1 ZNF814 chr19 58382128 - 3utr WDR47 chr1 109534998 + intron > 3 3 172 40 0.000 0.940 72 21 0.240 0.030 174 170 40 1242 CTCACGGCAACCTCTGCCTCCCAGGTTCAAACGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACG CTX 21.00 LQ 0 other ,, NM_001144989,NM_001144989,NM_001144989 ,, ,, ,, ,, ,, ,, NM_001142550,NM_001142551,NM_014969 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142550,NM_001142551,NM_014969;geneB_transcript_strand_disagree=NM_001142550;geneB_transcript_strand_disagree=NM_001142551;geneB_transcript_strand_disagree=NM_014969 ,, ,, MV4_11_RNAseq_1 GOLGA3 chr12 133402267 - intron EMC8 chr16 85812950 - 3utr > 4 2 55 99 0.510 0.000 20 104 1.000 0.050 56 52 17 227 CTTTTGGTAGGCACGCTCAGTCTGAATGTCCGCCATCTTCCCGGCCGCCTGAAAAAAAAAAAAGCCCACATCTTATACTCCAATGAGTGTGTTTGTGAGTTTTTATCCTGTTTGAATTTTGATGTCGTCCAGGCGTCCTGGGATCAGGGTT CTX 20.00 LQ 1 other ,,, NM_001172557,NM_001172557,NM_005895,NM_005895 ,,, ,,, ,,, ,,, ,,, ,,, NM_001142288,NM_006067,NM_001142288,NM_006067 ,,, ,,, ,,, ,,, 381,633,381,633 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142288,NM_006067;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 HIPK3 chr11 33378558 + 3utr NA chr21 21363008 - intergenic > 1 3 70 75 0.000 0.040 7 152 0.010 1.000 70 76 1006 5 ATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTACTGTCGATTCACTTTGAATTAAAATATATATTGCAAAAAAAAAAAAAAAAATCAAGACTGGGAGAAAATATTTGCAAACTACATATCCATTAAAGGCCTTGTATTTAAAAAA CTX 19.20 LQ 1 other ,,, NM_001048200,NM_001278162,NM_001278163,NM_005734 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 PLEKHA7 chr11 16996174 - intron MIR6723 chr1 565155 + intergenic > 1 3 137 109 0.490 0.500 38 40 1.000 0.000 138 143 18 7159 AATCCTGGCTATAAAAAAATACAAGCATTTTGAACTGGGGGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATTTTTTATTATGAAGAAAAAAAAATCTTGAGTTTATGTTCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCG CTX 19.00 LQ 0 other NM_175058 221 geneB_no_transcripts MV4_11_RNAseq_1 PRKACB chr1 84610231 + coding RPF1 chr1 84955316 + coding > 6 6 71 84 0.000 0.000 166 134 0.050 0.020 71 71 64 554 GATCAGAAAACAGCTCTGGAAAATGACAGCCTTCATTTCTCTGAACATACTGCCTTATGGGACAGATCAAGTCGCTTATGATGAAGCTACAGATGAATTTGCTTCTTACTTCAACAAACAGACTTCTCCCAAGATTCTCATCACAACATCAGAT DEL 18.41 LQ 0 Fusion 0,0,0,0,3 NM_001300916,NM_002731,NM_182948,NM_207578, ,,,, 1,1,1,1, ,,,, 187,,187,, ,,,, ,,,, NM_025065,NM_025065,NM_025065,NM_025065,NM_025065 123,123,123,123,123 4,4,4,4, tuple,tuple,tuple,tuple,tuple 367,367,367,367,367 1050,1050,1050,1050,1050 23,23,23,23, ,,,, IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD,IRKQLWKMTAFISLNILPYGTDQVAYDEATDEFASYFNKQTSPKILITTSD, PRKACB:NM_001300916[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_002731[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_182948[1,1]-RPF1:NM_025065[4,9];PRKACB:NM_207578[1,1]-RPF1:NM_025065[4,9]; geneB_transcripts=NM_025065 ,,,, 1,1,1,1, MV4_11_RNAseq_1 C15orf43 chr15 45289432 + intergenic ANKRD28 chr3 15838167 - intron > 0 3 74 145 0.820 0.020 1 167 0.000 0.260 76 80 5 54 CTCAGAAGTATGCCATGTGATGCTACCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTTTTAAAAAAAAAAAAAAAACCCAGCTGTGCTGTTCAGAGAATGTTTGTAAGTGTTGTACAGAAGAGGAGGAAAAACTACTTGTGCTCTTCCAACTGTGACTTTTATCACATAGCTTGGAATTTAGTGTTTTAAAAGATCGAATGAGGCG CTX 18.23 LQ 2 other 0,0 NM_152448,NM_152448 , , , , , , NM_001195098,NM_015199 , , , ,28 2700,3162 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001195098,NM_015199;geneb_utr_codons=13 , , MV4_11_RNAseq_1 COA6 chr1 234492904 + intergenic FDPS chr1 155278678 + 5utr > 0 3 179 125 0.800 0.030 0 91 0.710 0.130 183 183 15 585 GGGAGTGCTGCTTCCGCCGCAGGCCCCGGTTCAGCCGCCGCCGCTGGCGCGCACTGTACAGCTGCATCAGCTGCTCGTAGGACATGTCCAGCAGCTGGTCGAGGTCCACGCCGCGGTAGGTGAACTTGCGGAAGGTCCGCTTCTTCTTCTGCTCTACTTCTGCCATCTTGCCGGATCCTCAGAGCCGATCGCGGAGCGGATTCTGCTTTTAGGAGTACCCGCCAACAAGCGGGACCGAGCAGGAATCCGTATCTGGGAACAGAGCCCTTTGCTCCTCCCTCAGAATGAACGGAGACCAGAATTCAGAT INS 18.20 LQ 2 other 0,0,0,0 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001135822,NM_001242824,NM_001242825,NM_002004 -26,-33,-84,-26 ,,, tuple,tuple,tuple,tuple ,,, 1062,1062,747,1260 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001135822,NM_001242824,NM_001242825,NM_002004;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 RAN chr12 131361599 - 3utr H2AFY chr5 134670619 - 3utr ? 9 0 374 77 0.020 0.000 36 0 0.140 0.000 376 363 427 7679 TGGCTGGTTAGAAACTGGTTCTGAATACAGCGTAACATACACAGCAATTCAGATCTTAAGAAACTCAACTGTTGCCAGTTAATACAGTAAGTAGAACTTTATTCAGCTTCACCCTTATTTCATTTTTCCATATATTTAAGTGATCCTTTCTATACCTTTTAAGGTAAGCAATCATCTCAAGATTATCAGACATCTAAAGAAAACTTTGGTAAACTGGACTATAGTAATCGTATGAGAAAAAAATAGCTCAAGATTCCTAACTGCTACAAGAATAGTGTTGATGGGATCAAACTCCTAATTATCCTAATAGACCTAATTCATTTTTAAATGTGGAAAATATGCAAGATAAATTAAATGCTTAGTTAAAAAAAAAAAAAAAGTTTCTCCTACTGGGAGGTGGGACCCCTTTCATTTTCAGTTTTGCTCATCTAGGGAAAATAAGGC CTX 18.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 SLC13A2 chr17 26795472 + intergenic USP32 chr17 58332431 - intron > 8 0 122 70 0.750 0.090 236 1 1.000 0.000 124 106 22 47 AAAGGTTGAAATTTTTTTTGTTGTCTATAAGAAGCTCACGGGAAAAGATGTTAATTTTGAATTCCCAGAGTTTAAATTGTAAACAAAAAAGACTAAATAAAAAGTATATATTCACAGTAAAAAAAAAAAAAAAAAAAAAAAAGAACTACATTACTCGTCTGAAAGATGGGTGCTTGCTGAAGTTTGTCAAAATCGTG ITX 17.63 LQ 2 other 0,0 NM_001145975,NM_003984 , , , , , , NM_032582,NM_032582 , , , 1074,1074 4815,4815 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_032582 , , MV4_11_RNAseq_1 MT1HL1 chr1 237144847 + intergenic LOC101929596 chr2 38709459 - intron > 0 9 134 205 0.830 0.500 0 103 0.000 0.030 140 147 32 940 TCTGGACGACCTGAAGGTGGAGCTGTCCCAGCTGCGCGTCGCCAAAGTGACAGGCGGTGCGGCCTCCAAGCTCTCTAAGATCCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTTATTAACCAGACTCAGAAAGGGACACCCAGGATTTCAATGGTGCCCCTGGAGATTTTAGTGGTGATACCTAAAGCCTGGAAAAAGGAGGTCTTCTCGGGCCCGAGACCAGTGTTCTGGGCTGGCACAGTGACTTCACATGGGGCAATGGCACCAGCACGGGCAGCAGCTGGCACCTTATTGGCCAGCAACATGTCCCTGATCTCAGTGAGGTCCTCCTTGGTGAACACAAAG CTX 17.51 LQ 0 other 0 NM_001276687 geneB_no_transcripts MV4_11_RNAseq_1 DLG2 chr11 84296031 + intron HSD17B12 chr11 43877440 + 3utr > 0 35 99 444 0.990 0.000 1 1618 0.010 0.820 100 99 0 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA INS 17.18 LQ 1 other ,, NM_001142699,NM_001300983,NM_001364 ,, ,, ,, ,, ,, ,, NM_016142,NM_016142,NM_016142 ,, ,, ,, ,, 939,939,939 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 COX6C chr8 100890367 - 3utr MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12264426 + intergenic > 3 0 223 86 0.000 0.900 168 1 1.000 0.000 224 220 15 28 CGCAGATTTCTACAGAAACTATGATGTCATGAAAGATTTTGAGGAGATGAGGAAGGCTGGTATCTTTCAGAGTGTAAAGTAATCTTGGAATATAAAGAATTTCTTCAGGTTGAATTACCTAGAAGTTTGTCACTGACTTGTGTTCCTGAACTATGACACATGAATATGTGGGCTAAGAAATAGTTCCTCTTGATAAATAAACAATTAACAAATACTTTGGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTG CTX 16.80 LQ 1 other NM_004374 geneB_no_transcripts MV4_11_RNAseq_1 ATP5L chr11 118277783 + coding HMGB2 chr4 174255484 - 5utr > 0 4 73 152 0.750 0.000 0 178 0.000 0.270 84 82 10296 1220 CGCAGGTCGCCTGGTTCCTCCCACCCCTGCTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAAATAGTCAATAGTGCTCAGAGGGAAGCGTCTCCGTTGGGTCCGGCCGCTCTGCGGGACTCTGAGGAAAAGCTCGCACCAGGTGGACGCGGATCTGTCAACATGGGTAAAGGAGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCAGATCG CTX 16.37 LQ 0 CLoss 0,0,0,3,0,3 NM_006476,NM_006476,NM_006476,,, ,56,,,, 2,2,2,,, ,tuple,,,, 184,184,184,,, ,20,,,, ,63,,,, NM_001130688,NM_001130688,NM_002129,NM_001130688,NM_001130688,NM_002129 -35,-35,-27,-35,-35,-27 1,1,1,,, blat,tuple,tuple,blat,tuple,tuple ,,,,, 630,630,630,630,630,630 54,30,29,,, ,91,,,, QVAWFLPPLLRSLELFRA*KKIVNSAQREASPLGPAALRDSEEKLAPGGRGSVNMGKGDPNKPRGKMSSYAFFVQTCQI,AGRLVPPTPAEIPRAIQSLKKNSQ*CSEGSVSVGSGRSAGL*GKARTRWTRICQHG*RRPQQAAGQNVLVRLLRADLPD,QVAWFLPPLLRSLELFRA*KKIVNSAQREASPLGPAALRDSEEKLAPGGRGSVNMGKGDPNKPRGKMSSYAFFVQTCQI,,, ATP5L:NM_006476[1,2]-HMGB2:NM_001130688[1,5];ATP5L:NM_006476[1,2]-HMGB2:NM_001130688[1,5];ATP5L:NM_006476[1,2]-HMGB2:NM_002129[1,5];;; ERROR_geneB_multiple_matching_frames=NM_001130688 geneB_transcripts=NM_001130688,NM_002129;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon ,NSQ*CSEGS,,,, 2,1,2,,, MV4_11_RNAseq_1 SNHG21 chr15 83425537 + 5utr TOMM20 chr1 235274931 + 3utr ? 1 4 277 145 0.000 0.660 96 12 0.060 0.000 278 288 206 1434 CATTCATCGCGCTTACATTTCTCCACCTCATTTGAAGAACGAGCTTCGTAGCCCACGGAGCTGAGGTATATGAGCTCCCTGAAAGCACAAAGCAGTTATTTCCATCTTCAGATCATTCAGAGATTATGAAGGCACAAACCCTGCCTTCAATTTGCTTATAGTCAAGTGGAGCAGACACAAGTCAATGATTGCAGTATAGCCACTGAAGTAATCTAAAAGAGGTGGGGAGGCCACAGCTTATGTGAATGACTTTCTCAGGAGTTATAAAGTGATACAGACTTACCCAGTGCTCAGTTTTCACAAACACAGTCAAGTCTATCAAATTTCCAGATTTACAGCAAAATGTGCCCTCTAAAAAAGTGTACATTCTTCAGTTTCTCCTATACTTTTTTTTTTTTGCCTATCTTTCAAAACTGAGCACTGGGTATTTTT CTX 16.32 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr6 153603862 + intergenic NA chr12 77014121 - intergenic ? 17 0 311 81 0.510 0.870 246 1 0.610 0.010 312 331 564 0 CCCGATCGCACCACATCAATGATGGGAGCAGCCCCAGTCTTGTTTTTAGCAGCATTCACCCGTGTCTGTTCACTGACCAAAGTCCACAATTTGTCAAGGTTGACAGTTGGGCAGAAGCTCTGGTTCCTCTTTAAGTGGTAATGCTTCATACCAACTTTCCCAAAGTAGCCTGGGTGGTATTTGTCGAAGTTGATCCGGTGGTGATGCAGACCACCAGCATTACCGCGGCCGCCGGGGTGCTTCCGGTGCTTGCCTATGCGGCCGTGGCCGTGGCTCACGTGGCCCCTAAGTTTCCGGGTCTTCCTCAGTCTGGATGGCATGTTGAGATCGGAGCAGCTGGGATTACAGGCGGCCGCAACGGCACCCAGCTAATTTTTCTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCT CTX 16.23 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 TARBP1 chr1 234587199 - intron HSD17B12 chr11 43877440 + 3utr > 0 35 105 444 0.990 0.000 1 1618 0.000 0.820 107 99 55 174 CGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCAGTTTAAATGTATGTAAATATCGAAGCTATATGGTATGATTTATAAAGATAAATGGGCCAAAGTGTACATTGAGACTGGCAGCCATCTATGGTACCACTGAAACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGCCTTTGTTTCTGCATTAAACCAATATTGATCACACATATGACACAGGCTAGTCCTATAAAAGTAATGACTTCATAGAAATGGCATTATAATTTTTAAGTTGATACTCTACAGGTAGCTATTGATATAATTAGTTTTAATAAAACATGCTGCAACCATGGTATACAACAAAAATACATTTCTTTGGTGATTGAAATTAAGGCCGTATTTACAATGACTTAATATAAGACTGACTTTTATCCTGCTTCATAACTTGTATGGAGAACTCACCAAGAAAGAATTCAATACTGTGAAATATGCA CTX 16.18 LQ 0 other NM_005646 1723 NM_016142 939 geneB_no_inframe_contig_found geneB_transcripts=NM_016142;geneb_utr_codons=13 MV4_11_RNAseq_1 SNHG4,MATR3 chr5 138666087 + 3utr NA chr5 32888243 - intergenic > 1 2 355 109 0.010 0.960 102 12 0.070 0.400 356 364 2016 4 TTCAGTGAAATGCAAAAATATTCCCGTTATCTTTGACCAGTATTAATTTTTTAGATCTTACTGCTTGTCACTTGAATCCCGTGATTGTCATACATCTCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTCTTCATATTTTCAAGATGTAATTTTACATTTCTGCATTTTTAAAACAGTTTGGCCATAATCCTAGATGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAACAGAAATTTGCATGTATAATTTGTGTTTACTTGTAACTTTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGTGAATACCAATAAAAAGAAAACCCTGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAAGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGATATCCCAGAGATCGGAAGAG ITX 15.96 LQ 0 other ,,,,, NM_001194954,NM_001194955,NM_001194956,NM_001282278,NM_018834,NM_199189 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 LRRFIP2 chr3 37176658 + intron ANKRD28 chr3 15838167 - intron ? 0 3 77 145 0.810 0.020 1 167 0.000 0.260 80 80 50 54 CTCAGAAGTATGCCATGTGATGCTACCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTTTTAAAAAAAAAAAAAAAACCCAGCTGTGCTGTTCAGAGAATGTTTGTAAGTGTTGTACAGAAGAGGAGGAAAAACTACTTGTGCTCTTCCAACTGTGACTTTTATCACATAGCTTGGAATTTAGTGTTTTAAAAGATCGAATGAGGCG ITX 15.86 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 PSMA5 chr1 109944534 - 3utr UQCRH chr1 46782439 - 3utr ? 0 29 128 138 0.000 0.520 0 315 0.000 0.190 155 166 1129 1890 TTTCCCTACACGACGCTCTTCCGATCTCTTGAAGAGGTTATCAAGGACATTTAAGGAATCCTGATCCTCAGAACTTCTCTGGGACAATTTCAGTTCTAATAATGTCCTTAAATTTTATTTCCAGCTCCTGTTCCTTGGAAAATCTCCATTGTATGCAGATCATAGAACTTTTATTTAGATGGAATCATTGCGAATTACATAGAAGCTACCAGCCTAAGCCAAACCCATGAGGTTCATGTGAACTGACAGTTACACAAATAATAAACTAATGGTACATCCAAAACCATAAGGGAATATTCTCATG DEL 15.75 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 INTS4 chr11 77597550 - intron MIR6723 chr1 569095 + intergenic > 0 3 79 141 0.830 0.670 1 92 0.000 0.100 82 79 122 117 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATAACTAATCAAACTAACCCCAAA CTX 15.64 LQ 1 other NM_033547 2593 geneB_no_transcripts MV4_11_RNAseq_1 NA chr16 72698791 - intergenic NA chr16 72557309 - intergenic ? 7 7 82 142 0.000 0.000 136 164 0.470 0.500 82 82 14 13 CTCGTATTTGAATTTGTGGCGCTTGGTGTCCGCGAGTTGCCGAATGAAGCTGAGCGTCTCAGTGGAACCAGGGATCTCAGGGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGGAAATATGCCAACTGAACATTGGACTACCACGTCAAGGGTCTCCTACCCCTGGGCCATGGATCAATACCAGTCTGTGACCTGTTAGGAACCGG DEL 15.00 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 96912490 - intergenic PAK1 chr11 77033023 - intergenic > 0 3 99 59 0.920 0.000 1 184 0.000 0.280 102 92 6 27 GTCGATGCCACCGCATTTATAGATCAGATGGCCAGTAGTGGTGGACTTGCCCGAATCTACGTGTCCAATGACGACAATGTTGATATGAGTCTTTTCCTTTTCTAATTTTTTATATGAAATAATGAGTAGTTTCTTCCTGAACCATTTGAGA CTX 14.72 LQ 0 other 0,0 , , , , , , , NM_002576,NM_001128620 , , , , 1638,1662 , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 PPM1H chr12 63359100 - intergenic C1orf146 chr1 92694415 + intron > 16 0 186 86 0.510 0.920 181 1 0.520 0.000 187 200 54 0 GATGAAATCAGTGAGCTGCATGCACTTGAAAGGCATGGCCTGTCTCCTCACTTGAGTGCAAGGTCCATCGACCAAAGCCCTGTTCTGATCAATAACATCTACAATCGCGACCAATTTTCCGGCATGAGGTCCAAAGGAGACATAGGCCACCCGGCCAACCTCCACGAAGCGCCTGAACACCATGTTGGCAGCGTTAGGATGCTGATATCAGATACAAGCTTCAAGGACAATTTCTTTTCGAAGGCTTATTCCAGTTTCGTGAGGCTAGCATGAGGTGTGTGCATTTGCC CTX 14.48 LQ 1 other 0 NM_020700 NM_001012425 543 geneB_no_inframe_contig_found geneB_transcripts=NM_001012425;geneb_utr_codons=13 MV4_11_RNAseq_1 NDC1 chr1 54231465 - 3utr CYP4Z1 chr1 47540466 + intron > 4 0 89 84 0.000 0.890 122 1 0.040 0.010 90 152 551 0 GGGAGACCAAGAGGAGAGAAGCATTTCCTTTGATGAAGTCACATCCTGTCTATGAGCCCACTAATGCTGTAACATTGGCCTGAAAGAGAAGCATTTCCTTTGATGAAGTCACATCCTGTCTATGAGCCCACTAATGCTGTAACATTGGCCAATCAGGTCAAACTTGTGGTCCAGGCGAGCCCAGGCCTCAGCAATGGCTGTGGTGTTGCTCAGCATGCACACAGCTCTCTGTACCTTGGCC ITX 14.42 LQ 2 other , NM_001168551,NM_018087 , , , , , , NM_178134,NM_178134 , , , 320,320 1518,1518 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_178134 , , MV4_11_RNAseq_1 UGP2 chr2 64118683 + 3utr MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12264398 + intergenic > 3 0 146 129 0.000 0.890 130 0 0.210 0.000 147 145 595 24 CTTTCCTTCTTTGAAGAGAATCCCAAAAGTTAGTTCATCTTAAAGTGCAATATTGTTTAATCTTAAAACTGGGCAACTTTGGAAGAACTTTTAACAGAAGCCTCAATGATGATCACTTTGAATTGCTTGTGATTTCAAAAATAAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCCCTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAG CTX 14.30 LQ 0 other , NM_001001521,NM_006759 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 BAIAP2L1 chr7 98015041 - intron NOP58 chr2 203168135 + coding > 1 2 145 114 0.940 0.700 47 22 0.080 0.000 146 145 48 1373 CTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAAAGTTCAGACTTCAAATAGTGGCAAATAAAAAGTGCTATTTGTGAAAAAAAAAAAAAGAAAAAAAAGAGAGAGAACGAGGATTAACAGAAAGGAATTATGATTATATCACCCGGACACACATCATGCTTAAGATTCAACTGGGAGCATACCAGGGATGCTCTCTAACGTAATCAAGGAGATCGGAAGAGCGTCGTGTAGG CTX 14.10 LQ 1 NLoss 0,3 NM_018842, , 1, , 51, , , NM_015934,NM_015934 522,522 15, tuple,tuple 1566,1566 1590,1590 46, , GKATGDETGAKVERADGYEPPVQESV*SSDFK*WQIKSAICEKKKKKKKRENED*QKGIMIISPGHTSCLRFNWEHTRDAL*RNQGDRKSVV*, BAIAP2L1:NM_018842[1,1]-NOP58:NM_015934[15,15]; geneB_transcripts=NM_015934;geneb_utr_codons=1 , 2, MV4_11_RNAseq_1 RALY chr20 32664888 + coding EXO1 chr1 241995515 + intergenic > 6 0 435 95 0.010 0.880 107 1 0.030 0.010 436 431 1759 0 CTAAGCCTGACAGACCCAAGGGGCTAAAGAGAGCAGCATCTGCCATATACAGTGGCTACATCTTTGACTATGATTACTACCGGGACGACTTCTACGACAGGCTCTTCGACTACCGGGGCCGTCTGTCGCCCGTGCCAGTGCCCAGGGCGGTCCCTGTGAAGCGACCCCGGGTCACAGTCCCTTTGGTCCGGCGTGTCAAAACTAACGTACCTGTCAAGCTCTTTGCCCGCTCCACAGCTGTCACCACCAGCTCAGCCAAGATCAAGTTAAAGAGCAGTGAGCTGCAGGCCATCAAGACGGAGCTGACACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGGAGCAGATCGCTGCGGAGCAAAAGGCCAATCCAGATGGCAAGAAGAAGGGTGATGGAGGTGGCGCCAGCGGCGGCGGCGGCGGTGGTGGTGGCAGGAACGGCGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCA CTX 13.83 LQ 0 CLoss 0,0 NM_007367,NM_016732 , , , 665,713 , , NM_130398,NM_130398 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 HNRNPD chr4 83274982 - 3utr ZBTB7A chr19 4047698 - 3utr > 6 0 132 70 0.490 0.000 168 0 0.070 0.000 133 134 267 41 TCAGAATCAATTTGTGTTTTATGCCCTTTCCCCCAGTATTGTAGAGCAAGTCTTGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAAATCCTTTTGTATAAAAAAAAAAAAAATCACCCACCACCCCCCCAAAAACACAAAAAAAGAAAATCTATCTATATACAGATATCTATAT CTX 13.79 LQ 0 other ,,, NM_001003810,NM_002138,NM_031369,NM_031370 ,,, ,,, ,,, ,,, ,,, ,,, NM_015898,NM_015898,NM_015898,NM_015898 ,,, ,,, ,,, ,,, 1755,1755,1755,1755 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_015898;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 NA chr1 96913777 - intergenic DDX39A chr19 14530125 - 3utr > 0 3 101 276 0.890 0.020 0 114 0.470 0.090 111 101 128 927 GGATAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCTCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCC CTX 12.54 LQ 0 other 3 NM_005804 -15 tuple 1284 geneA_no_transcript_IDs_found geneB_transcripts=NM_005804;geneb_utr_codons=13 MV4_11_RNAseq_1 FUS chr16 31201456 + coding SFPQ chr1 35636538 + intergenic > 10 0 446 84 0.040 0.930 158 1 0.020 0.010 447 467 4337 0 ATGAACCCAGAGGTCGTGGAGGTGGCCGTGGAGGCAGAGGTGGCATGGGCGGAAGTGACCGTGGTGGCTTCAATAAATTTGGTGGCCCTCGGGACCAAGGATCACGTCATGACTCCGAACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTATTAAGACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGAGAGGCAACGGTCTCTTTTGATGACCCACCTTCAGCTAAAGCAGCTATTGACTGGTTTGATGGTAAAGAATTCTCCGGAAATCCTATCAAGGTCTCATTTGCTACTCGCCGGGCAGACTTTAATCGGGGTGGTGGCAATGGTCGTGGAGGCCGAGGGCGAGGAGGACCCATGGGCCAGGTTTATACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCGCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGC CTX 12.02 LQ 3 CLoss 0,0,0 NM_001170634,NM_001170937,NM_004960 ,, ,, ,, 1159,1150,1162 ,, ,, NM_005066,NM_005066,NM_005066 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr11 39502274 + intergenic NA chr11 39692220 + intergenic ? 5 6 31 144 0.000 0.000 238 68 0.290 0.320 31 31 16 18 GAGGCATTCCAGAAGTTTTGTTTTGTTTTCTTGACAATCTTTTGGTGAGGTACCTTGGGGATGGATCCTCCAACTTCAAACCATCAGATGCCTGCAGCTCCAGCTGAGATCTGACGCCAACCTCATGAAAATCCTAGAATCAGAACTGTCAAACCAAACTGCTCCTGAATTCCTA DEL 11.90 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 B2M chr15 45010292 + 3utr P4HB chr17 79801968 - coding > 2 12 330 52 0.010 0.000 107 12 0.220 0.010 331 342 1905 7217 CTGTCTCCATGTTTGATGTATCTGAGCAGGTTGCTCCACAGGTAGCTCTAGCAGGGCTGGCAACTTAGAGGTGGGGAGCAGAGAATTCTCTTATCCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTGTTAAGATAGTTAAGCGTGCATAAGTTAACTTCCAATTTACATACTCTGCTTAGAATTTGGGGGAAAATTTAGAAATATAATTGACAGGATTATTGGAAATTTGTTATAATGAATGAAACATTTTGTCATATAAGATTCATATTTACTTCTTATACATTTGATAAAGTAAGGCATGGTTGTGGTAAATGACGATCTCGAGGAACGGGAAGAAGCAGAGGAGCCAGACATGGAGGAAGACGATGATGACGATCTCGAGGACCTGGAAGAAGCAGAGGAGCCA CTX 11.88 LQ 0 NLoss 0,3 NM_004048, , 4, , , , , NM_000918,NM_000918 483,483 11, tuple,tuple 1447,1447 1527,1527 132, , VSMFDVSEQVAPQVALAGLAT*RWGAENSLIQHQHLGQI*TLQSLALKAC*DS*ACIS*LPIYILCLEFGGKFRNIIDRIIGNLL**MKHFVI*DSYLLLIHLIK*GMVVVNDDLEEREEAEEPDMEEDDDDDLEDLEEAEEP, B2M:NM_004048[1,4]-P4HB:NM_000918[11,11]; geneB_transcripts=NM_000918 , 2, MV4_11_RNAseq_1 GOLGA3 chr12 133402267 - intron EMC8 chr16 85812950 - 3utr > 3 2 55 97 0.510 0.020 12 106 1.000 0.050 57 53 17 227 CTTTTGGTAGGCACGCTCAGTCTGAATGTCCGCCATCTTCCCGGCCGCCTGAAAAAAAAAAAAGCCCACATCTTATACTCCAATGAGTGTGTTTGTGAGTTTTTATCCTGTTTGAATTTTGATGTCGTCCAGGCGTCCTGGGATCAGGGTT CTX 11.76 LQ 1 other ,,, NM_001172557,NM_001172557,NM_005895,NM_005895 ,,, ,,, ,,, ,,, ,,, ,,, NM_001142288,NM_006067,NM_001142288,NM_006067 ,,, ,,, ,,, ,,, 381,633,381,633 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142288,NM_006067;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 RFXANK chr19 19307855 + coding NA chr14 77435043 - intergenic > 3 0 171 72 0.000 0.760 190 1 0.020 0.010 172 183 994 0 GGCTCAGACACTGTGGTCCTCAGTCTCTTTCCCTGCACCCCTGAGCCTGTGAATCCTGAACCGGATGCCAGTGTTTCCTCTCCACAGGCAGGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTGGACTCCCTGTCCATCTCGGAGACAGAGGCCATGGCGCGGGCGAGTGTAGGGCTGGCGCTGCCGGACGCGGTGCTAGTCGCCGGATGAAGTGAG CTX 11.17 LQ 0 CLoss ,,, NM_001278727,NM_001278728,NM_003721,NM_134440 ,,, ,,, ,,, 271,268,271,268 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 LINC01138 chr1 143745213 - intergenic ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.080 0.000 152 152 74 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , , , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NBPF20,NBPF8_locA,NBPF9_locA,NBPF25P_locA,NBPF10,NBPF25P_locB,NBPF12 chr1 144521766 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.070 0.000 152 152 280 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001278267,NM_001278267 , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NBPF11_locB,NBPF8_locB,NBPF14,NBPF9_locB,NBPF25P_locC chr1 147932742 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.060 0.000 152 152 113 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001037501-locB,NM_001037501-locB , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NBPF11_locB,NBPF8_locB,NBPF14,NBPF9_locB,NBPF25P_locC chr1 148176990 - intron ZRANB2 chr1 71530135 - 3utr > 2 1 127 97 0.860 0.070 120 6 0.030 0.000 152 152 197 1268 CCCTACGCGACGCTCTTCCGATCTGGGAGAACTGGTGAGTCTTTTCAAGAGGAGGAAGTCCCTCAAAAGGGGCTGTGTTTCGCAAACGGCGCCCCAAAAGGGCTGAAATACTTCGATCTGGAAGAAAAAGACTCAGGCACTGAGGGAAGTGGGATATATTTTCCTTTCTGACACATAATTTGGGGCAAAAAAGAAAGTCTTAAGAGTTTATCTTTTGTCTGCTGATACGGTTGCTTGATAAAGCCATCTCACATTGTTGACCAATG DEL 11.16 LQ 0 other , NM_001037501-locB,NM_001037501-locB , , , , , , NM_005455,NM_203350 , , , , 963,993 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005455,NM_203350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr TAF13 chr1 109598053 - intergenic > 13 0 405 183 0.000 0.980 504 1 1.000 0.010 406 393 73 0 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG CTX 11.08 LQ 0 other 0 NM_024945 NM_005645 geneB_no_transcripts MV4_11_RNAseq_1 AURKAIP1 chr1 1309116 - 3utr TMBIM4 chr12 66531199 - 3utr > 4 0 222 70 0.000 0.000 132 0 0.250 0.000 223 218 89 689 AGAAGACGCGGTTCCTGCGGAGGAAGGTCCAGGAGGGACGCCTGAGACGCAAGCAGATCAAGTTCGAGAAAGACCTGAGGCGCATCTGGCTGAAGGCGGGGCTAAAGGAAGCCCCCGAAGGCTGGCAGACCCCCAAGATCTACCTGCGGGGCAAATGAGTCTGGCGCCGCCCTTCCCGCCCGTTGCTGCTGTGATCCGTAGTAATAAATTCTCAGAGGTCTCAAAAAAAAAAAAAAAATTTTTCTTCCTAAATTAGCCACGCATAGCGGTTCGTTTGCAATTCAAAAA CTX 10.84 LQ 0 other ,,,,,,,,,,, NM_001127229,NM_001127229,NM_001127229,NM_001127229,NM_001127230,NM_001127230,NM_001127230,NM_001127230,NM_017900,NM_017900,NM_017900,NM_017900 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001282606,NM_001282609,NM_001282610,NM_016056,NM_001282606,NM_001282609,NM_001282610,NM_016056,NM_001282606,NM_001282609,NM_001282610,NM_016056 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, 858,489,624,717,858,489,624,717,858,489,624,717 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001282606,NM_001282609,NM_001282610,NM_016056;geneb_utr_codons=13 ,,,,,,,,,,, ,,,,,,,,,,, MV4_11_RNAseq_1 EMBP1 chr1 121313603 + 5utr LOC101929225 chr20 5976926 + intron > 0 3 71 69 0.520 0.000 1 166 0.000 0.020 77 83 1 31 CTGAAAGGGTGCAATACAGCTTTCTTGAAATGTGTATTGAACGGATGAATGTATAAATAAAAATTAAATTTTGTAAAAAAAAAAAAAAAAAAAAAAATGGAGAAAGTAGATAGTAGTATAAATATAGTGAAGTCTTTAAAAGCTAGGAGTTA CTX 10.78 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 ATP5E,SLMO2-ATP5E,SLMO2 chr20 57607358 + 5utr MTRNR2L8,MIR4485 chr11 10530425 - 5utr ? 3 0 300 81 0.500 0.800 101 1 0.200 0.010 301 307 1934 2 CCCATGGAATGAGATCCTTTTCAATCTGCCATAACATGTGCCCACACATCTTCACCTTGGAAATGTAGCATTTCAAGCTTTAGTCAGGGTAGATTATTCCTTCTTTACTTTCACAATTTTTACGTTGCTGCCAGAAGTCTTCTCAGCATTTGCTTTGAATTCTGTCTTCAGTGCATCTCTCACTGCTTTTGCACAGATCTGGGAGTATCGGATGTAGCTGAGTCCAGCCTGTCTCCAGTAGGCCACCATGCTGTAGCGAAAGCGGAGCTCGTCGGGCCGAATCGCCAAGACGCCGGCAATGTCGGCTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAAC CTX 10.35 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 TXNRD1 chr12 104659689 + intron SRGN chr10 70864278 + 3utr > 3 2 179 69 0.750 0.000 116 18 0.230 0.020 180 166 59 101039 CTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAGGTGCAGGGCCCTCGTCCGGGTGTGCCCCAAATAAACTCAGGAACGCCCCGGTAAAAAAAAAAAAAAAAAAAATAATGAAACACAGTGAATTTGTAGAGTGGGGGTATTTGACATATTTTACAGGGCGGCATGTCATAGATAATATTACCTTTGACTGTTTTTACAGAGGGAGTGGGAGAGTGTCTCGGCTAAGCAGTATTCTGTC CTX 10.28 LQ 0 other NM_001093771 304 NM_002727 477 geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 MV4_11_RNAseq_1 PRCC chr1 156760427 + intron NA chr1 96914017 + intergenic > 1 2 157 124 0.610 0.960 81 18 0.080 0.130 165 155 263 15 TGCTGGCATGCGCCTGTAATCCCAGCTACGTGGAAGGCTGAGACAGGAGAATCGCTTGAACCCAGGAGGCGAGGTTGCAGTGAGCCAAGATGGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCGTGTGGCAGTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATTTGTCACAGAATTTTGAGATCGGAAGAGCGTCGTG INS 10.26 LQ 1 other NM_005973 1084 geneB_no_transcripts MV4_11_RNAseq_1 HMHA1 chr19 1087007 + 3utr NDUFA11 chr19 5894687 + 3utr ? 0 4 139 107 0.000 0.010 0 203 0.000 1.000 143 148 165 70 TGCCGCCCAGGGCCGTCCAGGAAAACGCTCTCGATGACGGACGTATCCCCCGGCTCTAAGGTTTCGCCCGTCAGCCCCACATGGCCACCAAGCACTGGAAACGTGGCCCATGCGCCTGTGGAACTGCATTTTTTTTTTTTTTTTTTCACACACAGACACAGAATTTATTTCTGGACGCATTCTGCAGGCTGGAGGTCCCGGCAGGCACAGGGCTCACACCTTGGGTTTTGCAAACACCTCCCACCCCTCCAGCCGCCCCCTCTTG DEL 10.15 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 96913391 - intergenic SLC27A5 chr19 59003891 - intergenic > 0 4 89 142 0.950 0.020 1 182 0.010 0.270 92 83 0 124 GGTCATTTTTGCTGTCACCAGCAACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAGCCCACATTGGCCCCAGGAAGAATTCTTGAAGTATCGGTGGATGCCCTCATGGGAGGACCAGTGACTCTCACGAAAAGCAGCCTTTGTTGTCCAAGTGAATAAATAATGCCTTTCATGTAAGCATGTGAGAAATACAGGCAGATGCTGTAGCGAT CTX 10.08 LQ 0 other 0 NM_012254 geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 96912955 - intergenic ATG12 chr5 115166718 - 3utr > 0 3 86 151 0.940 0.000 1 166 0.000 0.020 88 83 15 427 TCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGCATCTTTTTGAGTGTTTCATAATGCATTTTCCAACTTGAAAACAATAATTGAAAAATAGCCTTATTGTATATTTTATGCCATGACTAAAAGTGCCATTTTTACTGATGCTATTAGACTGATAATTTCTTGAAGTGAAATTTAACCT CTX 9.96 LQ 0 other , , , , , , , , NM_001277783,NM_004707 , , , , 225,423 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001277783,NM_004707;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chrX 36698022 + intergenic NA chrX 36982319 + intergenic ? 0 5 97 155 0.000 0.000 0 194 0.000 0.190 97 97 37 26 GTTGGCATAGGCTCTCTGCTATCAGTTGAACCAGAGATTCAGGCTGCTTTCATCTTGTAGTTCCACCATCTCAACACGGGCTCTCCATGTTTGATGTTTTTTGTTATTTTCAAAAGCTTGTCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCTGGACGAGTTTCTGCTTGAGCACCAGCGCGGN DEL 9.70 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 MIR6723 chr1 568070 + intergenic YWHAB chr20 43536809 + 3utr > 2 2 102 89 0.500 0.490 19 124 0.420 0.000 104 101 42 1884 TTCGAAAAACCCGTATACAAAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAAAAAAAAAAAAAATCCCTCCTTTCTAGCTGAACAAAAATGGGCAGTTAATACTTGGCGCTTGAAAATGCAGTAGTGAATGTGGAAC CTX 9.69 LQ 0 other , , , , , , , , NM_003404,NM_139323 , , , , 741,741 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_003404,NM_139323;geneb_utr_codons=13 , , MV4_11_RNAseq_1 PGAM1 chr10 99192349 - 3utr SRGN chr10 70847892 + 5utr ? 0 35 143 102 0.900 0.080 0 187 0.000 0.360 157 157 5483 20209 TGCTCTTCCGATCTGAACTGCTATTCTGACTAGATTGTATGAAGGGAGTGGGTGCAGGCGACAAAATGGCTAAAATGAAAATGGGAGCCACTGGTCCCCGTCTGCAGCTACAACTCAAGATGTCTACAGATGTGGTCAGTGTGACATGTGCAGGTGGGAGAGCTAGACTAAGTTGGTCATGATGCAGAAGCTACTCAAATGCAGTCGGCTTGTCCTGGCTCTTGCCCTCATCCTGGTTCTGGAATCCTCAGTTCAAGGTTATCCTACGCAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTC ITX 9.35 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 HSD17B12 chr11 43877448 + 3utr LOC101928241 chr1 96709207 + intergenic > 18 0 353 100 0.000 0.990 820 1 0.700 0.010 354 340 162 0 CAGAATGATAGACTCAAGCATAAAACTTGGCAGTTTTATCTGCTTCAAAATGCCATTGATCATTATTCCTGTATTTTCTCTGAAACTGATTATAAAAACCAATGTCCAGCTACTCTTTTGACACTTGAAGAAATGGAGATCGATTTGATTTGTTTATAAGCAGACACACTGCAATTTACAAAGATCTCTTTACGGTTTTATAAAATTATCTTCCAGTTTGTACATTTATATGGAATTGTTCTTTATCAAGGGTAGCTAATGACATGAAAATAATTGTGAAATATGGAATTATTTCTGACACATGAAGCCCACTAAACTATGCTTTCTTATAATGCATATTTCTTCTCAGTTTATTTTTTATTTTATTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCC CTX 9.20 LQ 0 other NM_016142 geneB_no_transcripts MV4_11_RNAseq_1 LDB1 chr10 103867222 + intergenic PITX1 chr5 134364330 - 3utr > 2 6 111 41 0.350 0.000 80 14 0.180 0.010 112 111 37 1056 CATGCTTTCCTCAACTGCAGTCACCCCAGAGGAAAGGGGGAGAGATGGTGAAATGTCTCCTTGGTCTGAAGCTCTCACACCATATAAAATGGTATGCACACCTCCCTCCTCCCACTTCCCACTCCGGGTTGGTTTTGTGTTTGCTTTTCCG CTX 9.10 LQ 0 other 0,0 NM_003893,NM_001113407 , , , , , , NM_002653,NM_002653 , , , , 945,945 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002653;geneb_utr_codons=13 , , MV4_11_RNAseq_1 FBXO34 chr14 55707157 - intergenic TAX1BP1 chr7 27868484 + 3utr > 0 5 72 223 0.670 0.000 1 109 0.010 0.060 73 74 0 719 GTTTTCCTTTATTGAGTACCAAGCCATGTAATGGTAACTTGGACTTTAATAAAAGGGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACACCTAAAATAGACCACTGAGGAGACCATAGAGCGGATGCTTTCATGCACCCTTTACTGCACTTTCTGACCAGGAGCTACTTTGAGTTTGGTGTTACTAGGATCAGGGTCAGTCTTTGGCTTATCAATAAATTTTAATCTCTGTTAATCTTACCTGCTTTAAAAAAAAGTTCTTGTGTGTTCGTATCTTTATTTATTCCCTAG CTX 9.03 LQ 2 other 0,0,0,0 NM_017943,NM_017943,NM_017943,NM_017943 ,,, ,,, ,,, ,,, ,,, ,,, NM_001079864,NM_001206901,NM_001206902,NM_006024 ,,, ,,, ,,, ,,, 2244,2244,1773,2370 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001079864,NM_001206901,NM_001206902,NM_006024;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 MIR6723 chr1 564472 - intergenic COL9A2 chr1 40766371 - 3utr > 1 2 35 123 0.590 0.000 9 63 0.020 0.050 36 36 43 83 GCGGTGTATTCGATGTTGAAGCCTGAGACTAGTTCGGACTCCCCTGAGGCGGCTATACCCTTAAGCCAGCCCCACTACTTCCTTCCCTGCCTCCCAGCTCAGTATTTAAACATCATCTCCCTTCTCTTTCTCGCATAACTCCCCACCCCTTTCTCCCCG INS 9.00 LQ 0 other NM_001852 2070 geneB_no_inframe_contig_found geneB_transcripts=NM_001852;geneb_utr_codons=13 MV4_11_RNAseq_1 ATP8B2 chr1 154350142 - intergenic CRK chr17 1325475 - 3utr > 0 5 85 376 0.910 0.020 1 88 0.010 0.150 89 75 1 105 CTTAAGCTGTTCTTGCATAGGCTCTTAAGCAGCATGGAAAAATGGTTGATGGAAATTAAACATCAGTTCAGTCTCAAAAAAAAAAAAAGGAAAAAAAAAAGAAAAAAAAATGTTGAACCAATTGTGAATTACTTATGTATTATTCATTTCTCATGGGGAGAGTAATGCTGTTGAAGAACATTACATTGTAAACTGCCTTCATTTTTGGCTCTTTGTTTATGTTCAGGTTTAGTTTACAAACCCATTTAAGTATGGAATGATTTATATGGGGTCAGGTGCTCCACAAAATAGACCTATGAGACCAAAAATGACCTAGGCTATTTAGACGACAGCATGAAACTTCCACGTTAGTTCTCAGTCTATAAAGGCACTTACCGGTCTCTGGTGTGGTATGACCAATAGAAACACCTTATAGTTTGCTTTGGACCTCATTTTGGAAAAATAATCTGCC CTX 8.90 LQ 1 other 0,0 NM_020452,NM_020452 , , , , , , NM_005206,NM_016823 , , , , 615,915 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_005206,NM_016823;geneb_utr_codons=13 , , MV4_11_RNAseq_1 RPS17_locB chr15 83205511 - 3utr TPRKB chr2 73960989 - intron > 174 0 134 67 0.850 0.000 475 1 1.000 0.000 139 146 2494 1534 CTCCCACTAAGGAAATGCTGAAGCTTTTGGACCTCGCCACTCTGTCAAACCTGCAGGTCCCTCAGCCTACAGTTGGGATGAATTTCAAAACGCCTCGGGGACCTGTTTGAATTTTTTCTGTAGTGCTGTATTATTTTCAATAAATCTGGGACAACAGACCAAGAATCCGCCTCAAAAAAAAAAAAAAAAAAAAAAGAATGAATGAGCCATACAG CTX 8.70 LQ 0 other NM_001021-locB NM_016058 141 528 geneB_no_inframe_contig_found geneB_transcripts=NM_016058 MV4_11_RNAseq_1 BZRAP1-AS1 chr17 56409535 - intron EIF4A3 chr17 78120926 - 5utr > 0 8 69 125 0.000 0.080 1 172 0.000 0.220 69 91 132 437 CTGGAGAGTAAGGCGGGGATGGCAGAGGGTACGCAGAGGCTGAGAAGTGGGACCAGTGTCTCAAGGGGCACAGCGAGGTCGGCAGCGGCAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCGGCGAGGTCGGCAGCGGCACAGCGAGGTCGGGAGCGGCAGCGAGGTCGG INS 8.56 LQ 2 other 3,0,0 ,, ,, ,, ,, ,, ,, ,, NM_014740,NM_014740,NM_014740 -55,-55,-55 ,, tuple,tuple,tuple ,, 1236,1236,1236 ,, ,, ,, ;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_014740 geneB_transcripts=NM_014740;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 LYZ chr12 69747288 + 3utr GATAD2A chr19 19504102 + intron > 139 0 82 68 0.000 0.000 278 1 0.070 0.000 83 84 21353 15 AATAGAACTAATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTTTGAGATTCCGTTTAAAAAAAAAAAAAATTATAAGGGACAAGTGAACACTTAAGAGCTTTACTTGTGTGGC CTX 8.39 LQ 1 other NM_000239 NM_017660 1902 geneB_no_inframe_contig_found geneB_transcripts=NM_017660;geneb_utr_codons=2 MV4_11_RNAseq_1 LOC101929231 chr2 150453070 + intron COX5B chr2 98262554 + coding > 0 3 88 142 0.930 0.000 1 119 0.000 0.470 95 103 0 4003 ATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTTCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCATGAGGGCTCGCGGCCCCCGTGGCGCGGCCGCGATGCGGTCCATGGCATGTGGAGGCGGTGTTCCCAACGATGAAGAGCAGGAGACTGGGTTGGAGAGGGAGATCA INS 8.33 LQ 0 NLoss NM_001862 5 390 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001862 geneB_transcripts=NM_001862 MV4_11_RNAseq_1 C5orf34 chr5 43496087 + intron ATG12 chr5 115166718 - 3utr > 0 3 78 151 0.950 0.000 1 166 0.000 0.020 83 83 31 427 TCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGCATCTTTTTGAGTGTTTCATAATGCATTTTCCAACTTGAAAACAATAATTGAAAAATAGCCTTATTGTATATTTTATGCCATGACTAAAAGTGCCATTTTTACTGATGCTATTAGACTGATAATTTCTTGAAGTGAAATTTAACCT ITX 8.30 LQ 0 other , NM_198566,NM_198566 , , , , , , NM_001277783,NM_004707 , , , , 225,423 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001277783,NM_004707;geneb_utr_codons=13 , , MV4_11_RNAseq_1 GPAA1 chr8 145139313 - coding STMN1,MIR3917 chr1 26230282 - coding ? 5 0 229 70 0.090 0.000 202 0 0.010 0.000 230 235 573 8831 TGAGCTTGCGGAACATGCCCTCCAAAGCCTTGCCCACTGCCACCAGGTCATACTTGTACTGGCGGAAGCTATTGATGCCACGCAGGGTTAGGGCCTCCACACGGTAGCGCAGGAAGAGGCCATGGGAGCCGTGGGGGCGGCCGGAGGCCTGCCGCAGAACCATGAGCAGCAGTGTCTGCAGGCCCTGCAGCGGTCCATCCAATGATGTCCAGTCCTCGGGCTGCAGCTTGCCCTGAAGCGTGCACAACAGGCCAGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAGAATCTGTTCCAGAATTCCC CTX 8.29 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 BZRAP1-AS1 chr17 56409559 - intron EIF4A3 chr17 78120924 - 5utr > 0 6 69 123 0.000 0.100 1 160 0.000 0.220 69 93 140 437 CTGGAGAGTAAGGCGGGGATGGCAGAGGGTACGCAGAGGCTGAGAAGTGGGACCAGTGTCTCAAGGGGCACAGCGAGGTCGGCAGCGGCAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCACAGCGAGGTCGGCAGCGGCGGCGAGGTCGGCAGCGGCACAGCGAGGTCGGGAGCGGCAGCGAGGTCGG INS 7.97 LQ 2 other 3,0,0 ,, ,, ,, ,, ,, ,, ,, NM_014740,NM_014740,NM_014740 -54,-54,-54 ,, tuple,tuple,tuple ,, 1236,1236,1236 ,, ,, ,, ;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_014740 geneB_transcripts=NM_014740;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 PCBD2 chr5 134260153 + intron NPC2,MIR4709 chr14 74947466 - coding > 0 4 71 69 0.680 0.130 1 182 0.000 0.030 78 82 180 564 CTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGCTGTGGGTGAAAGAGTATGATGGGGTGGTGGTGGAGTGGAAACTTCAGGATGACAAAAACCAAAGTCTCTTCTGCTGGGAAATCCCAGTACAGATCGTTTCTCAT CTX 7.88 LQ 0 NLoss 0,3 NM_032151, , 2, , 216, , , NM_006432,NM_006432 127,127 4, blat,blat 380,380 456,456 24, , LVSVLVGLAMEVGLVLWVKEYDGVVVEWKLQDDKNQSLFCWEIPVQIVSH, PCBD2:NM_032151[1,2]-NPC2:NM_006432[4,5]; geneB_transcripts=NM_006432 , 1, MV4_11_RNAseq_1 HSPA8 chr11 122928280 + 3utr GPBP1L1 chr1 46093374 - 3utr ? 0 3 75 169 0.910 0.000 0 166 0.000 0.010 75 83 10963 472 GCCAATTTTAAATAGTTTTATTTAAGACATTGCATTTTCCACTTACAATACAGTGTTTATAAAGTGCAATGTTATGGTGGAGGTGTAAAATATTTGGATATAGGAAATGTTGTGTTATTCTTGCAGCCTTGATATTCAGGGTGGATTGTAAAATATAAATTTTTGTGAGATTTCAAAGATTAAGATTATTTTGATAACATTATTTACAGATTTAAAAGATGTGGTTATCACAAGTCTCGAGGGGGAAACTAC CTX 7.47 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 VIM chr10 17279592 + 3utr SRGN chr10 70864285 + 3utr > 3 277 330 63 0.000 0.070 130 74 0.910 0.010 331 331 32 103756 CTTGAATAAAAATTGCACACACTCAGTGCAGCAATATATTACCAGCAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTTCAAGTGCCTTTCTGCAGTTTTTCAGGAGCGCAAGATAGATTTGGAATAGGAATAAGCTCTAGTTCTTAACAACCGACACTCCTACAAGATTTAGAAAAAAGTTTACAACATAATCTAGTTTACAGAAAAATCTTGTGCTAGAATACTTTTTAAAAGGTATTTTGAATACTATTAAAACTGCTTTTTTTTTTCCAGCAAGTATCCAACCAACTTGGTTCTGCTTCAATAAATCTTTGGAAAAACTCAAAAAAAAAAATAATGAAACACAGTGAATTTGTAGAGTGGGGGTATTTGACATATTTTACAG DEL 7.43 LQ 0 other NM_003380 NM_002727 477 geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 MV4_11_RNAseq_1 TEX261 chr2 71215019 + 3utr PTMA,MIR1244-3_locD,MIR1244-1_locD,MIR1244-2_locD chr2 232577169 + coding > 2 19 122 28 0.000 0.930 57 74 0.070 0.010 123 123 96 63262 TCCCAGAGGAAGATTTATAAATAGGATATTGTAGATGTTCTTCTGAAAATCTAGCCCAGTCCTAAATTGTCCCCTCTCCTACTCCCAGTTTGACAGTCACGGAGCCTTGGGGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCN DEL 7.40 LQ 0 NLoss 0,0,0,0 NM_144582,NM_144582,, ,,, 6,6,, ,,, ,,, ,,, ,,, NM_001099285,NM_002823,NM_001099285,NM_002823 77,76,77,76 4,4,, tuple,tuple,tuple,tuple 231,228,231,228 336,333,336,333 40,40,, ,,, PRGRFINRIL*MFF*KSSPVLNCPLSYSQFDSHGALGEEDGDEDEEAESA,PRGRFINRIL*MFF*KSSPVLNCPLSYSQFDSHGALGEEDGDEDEEAESA,, TEX261:NM_144582[1,6]-PTMA:NM_001099285[4,5];TEX261:NM_144582[1,6]-PTMA:NM_002823[4,5];; geneB_transcripts=NM_001099285,NM_002823 ,,, 1,1,, MV4_11_RNAseq_1 CTSG chr14 25042767 - 3utr WAC-AS1 chr10 28811928 - 3utr > 2 1 128 38 0.000 0.750 66 7 0.250 0.080 129 136 94 155 GACAACAATGAGAAGCTTCAAACTGCTGGATCAGATGGAGACCCCCCTGTGACTGACTCTTCTTCTCGGGGACACAGGCCAGCTCCACAGTGTTGCCAGAGCCTTAATAAACGTCCACAGAGTATAAACAAAAAAAAAAAAAAAGAAAAGACAGTAGCATATGTTCATGTCAAG CTX 7.00 LQ 0 other NM_001911 geneB_no_transcripts MV4_11_RNAseq_1 OVOL2 chr20 17992678 - intergenic DTWD2 chr5 118309655 - intron > 0 16 68 93 0.680 0.840 1 687 0.010 0.600 73 73 1 359 CCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATTTTCTTCGTCTACCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATTTTCTGCCTCTTCCAC CTX 6.80 LQ 0 other 0 NM_021220 NM_173666 218 897 geneB_no_inframe_contig_found geneB_transcripts=NM_173666 MV4_11_RNAseq_1 XRCC5 chr2 217071004 + 3utr SEC62 chr3 169700644 + coding > 3 0 83 69 0.000 0.000 136 0 0.330 0.000 84 83 18 821 CAGTCACCTCTTCTTCAGCACCCTCATAAGTCGTCACTAATACACAGTTTTGTACATGTAACATTAAAGGCATAAATGACTCAGACAAAAAAAGAAAAAGAGAAAAAAAAAGATGGTGAAAAGGAAGAATCCAAAAAGGAGGAAACTCCAG CTX 6.77 LQ 0 NLoss 0,3 NM_021141, , 21, , , , , NM_003262,NM_003262 134,134 4, blat,blat 401,401 1200,1200 27, , QSPLLQHPHKSSLIHSFVHVTLKA*MTQTKKEKEKKKDGEKEESKKEETP, XRCC5:NM_021141[1,21]-SEC62:NM_003262[4,8]; geneB_transcripts=NM_003262 , 0, MV4_11_RNAseq_1 ERCC2 chr19 45860890 - coding PSMB4 chr1 151374339 - 3utr > 0 5 69 279 0.000 0.000 1 128 0.000 0.160 75 80 185 940 GCCAAAGGCTTCACCATCATCATCGAGCCCTTTGACGACAGAACCCCGACCATTGCCAACCCCATCCTGCTCTTCCGATCGGGCAACTTCAGTTCTGGATAATGCATCTGTATTTCATTCAAAGCCACTGATCATGTGGGCAATATCCCAGTTGGTCTCTGTAGACAATGGTCCCTCTATTTCAACACCTTTTTCGGTGACAGTGGCGATTTGAAACCGGTTGTAAGAACGGGCATCTCGGTAGTACAGCACTCGCATGCAGCGTTCTACTAAGTCGCGGGCCTCGGTCTGGCTTAGCACTGGCTGCTTCTCCAGAACTTCTCGCAGCAGAGGCTGAGCCAAGTATGCACCATAACCAG CTX 6.37 LQ 0 CLoss NM_000400 1305 NM_002796 geneB_no_inframe_contig_found geneB_transcripts=NM_002796;geneB_transcript_strand_disagree=NM_002796;geneb_utr_codons=13 MV4_11_RNAseq_1 ANAPC5 chr12 121746160 - 3utr SPPL3 chr12 121354661 + intergenic > 4 0 326 81 0.000 0.960 134 1 0.400 0.010 327 337 26 0 CTGCCATCGAGAACCTCAATGAAGCCAAGAACTATTTTGCAAAGGTTGACTGCAAAGAGCGCATCAGGGACGTCGTTTACTTCCAGGCCAGACTCTACCATACCCTGGGGAAGACCCAGGAGAGGAACCGGTGTGCGATGCTCTTCCGGCAGCTGCATCAGGAGCTGCCCTCTCATGGGGTACCCTTGATAAACCATCTCTAGAGAGGACATCCCTGCTGGGCTGCTGTGCAGAGTATAAGATTTTGGACTTGTTCATGTCCCCTCTCTCCCTATAAATGATGTATTTGTGACACCCTATCTTGTCAATAAACAGCATTCTGATTAAAAAAAAAAAAAAAAAAGTTGGTGATGACATTGCCAAGGCAACGGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAG ITX 6.36 LQ 0 other 0,0 NM_001137559,NM_016237 , , , , , , NM_139015,NM_139015 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ANAPC5 chr12 121746160 - 3utr TRNP1 chr1 27306773 + intergenic > 4 0 326 81 0.000 0.960 134 1 0.400 0.010 327 338 26 0 CTGCCATCGAGAACCTCAATGAAGCCAAGAACTATTTTGCAAAGGTTGACTGCAAAGAGCGCATCAGGGACGTCGTTTACTTCCAGGCCAGACTCTACCATACCCTGGGGAAGACCCAGGAGAGGAACCGGTGTGCGATGCTCTTCCGGCAGCTGCATCAGGAGCTGCCCTCTCATGGGGTACCCTTGATAAACCATCTCTAGAGAGGACATCCCTGCTGGGCTGCTGTGCAGAGTATAAGATTTTGGACTTGTTCATGTCCCCTCTCTCCCTATAAATGATGTATTTGTGACACCCTATCTTGTCAATAAACAGCATTCTGATTAAAAAAAAAAAAAAAAAAGTTGGTGATGACATTGCCAAGGCAACGGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAG CTX 6.36 LQ 0 other 0,0 NM_001137559,NM_016237 , , , , , , NM_001013642,NM_001013642 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ANAPC5 chr12 121746160 - 3utr KIAA1551 chr12 32101383 + intergenic > 4 0 326 78 0.000 0.960 134 1 0.400 0.010 327 337 26 0 CTGCCATCGAGAACCTCAATGAAGCCAAGAACTATTTTGCAAAGGTTGACTGCAAAGAGCGCATCAGGGACGTCGTTTACTTCCAGGCCAGACTCTACCATACCCTGGGGAAGACCCAGGAGAGGAACCGGTGTGCGATGCTCTTCCGGCAGCTGCATCAGGAGCTGCCCTCTCATGGGGTACCCTTGATAAACCATCTCTAGAGAGGACATCCCTGCTGGGCTGCTGTGCAGAGTATAAGATTTTGGACTTGTTCATGTCCCCTCTCTCCCTATAAATGATGTATTTGTGACACCCTATCTTGTCAATAAACAGCATTCTGATTAAAAAAAAAAAAAAAAAAGTTGGTGATGACATTGCCAAGGCAACGGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAG ITX 6.36 LQ 0 other 0,0 NM_001137559,NM_016237 , , , , , , NM_018169,NM_018169 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 MIR6723 chr1 566450 + intergenic DTL chr1 212277924 + 3utr > 0 4 113 117 0.740 0.000 0 244 0.010 0.040 155 181 936 456 GTTGACTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCAGCCATTTTACCTCACCCCCAAAAACACAAAAAAAAAAAAAAAAAAAAAAATCCATGAAAAAAAAAAGATTGATAAAGTAGATGATTTTGTTTGTATCCCTACCCATCCCCTGGCAGCCCTACTGATTGAAATTGGGGTACATTTGGCTGTCAGAAATATTACC DEL 6.34 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001286229,NM_001286230,NM_016448 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_CDS_mapping_exception=NM_001286229:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_001286230:-2;geneB_CDS_mapping_exception=NM_016448:-2 geneB_transcripts=NM_001286229,NM_001286230,NM_016448;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 SYNCRIP chr6 86328582 - coding FAIM3 chr1 207081441 + intron > 5 0 145 86 0.530 0.950 117 1 0.010 0.010 146 149 1597 0 CTGGAACGAGTGAAGAAGTTAAAAGATTATGCGTTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTGGAGGGAGAAAATATTGAAATTGTTTTTGCCAAGCCACCAGATCAGAAAAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGAC CTX 6.32 LQ 1 CLoss ,,,,,,,,,,,,,,,,,,,, NM_001159673,NM_001159673,NM_001159673,NM_001159674,NM_001159674,NM_001159674,NM_001159675,NM_001159675,NM_001159675,NM_001159676,NM_001159676,NM_001159676,NM_001159677,NM_001159677,NM_001159677,NM_001253771,NM_001253771,NM_001253771,NM_006372,NM_006372,NM_006372 ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, 940,940,940,1129,1129,1129,1129,1129,1129,1234,1234,1234,1234,1234,1234,778,778,778,1234,1234,1234 ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449,NM_001142473,NM_001193338,NM_005449 ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001142473,NM_001193338,NM_005449;geneB_transcript_strand_disagree=NM_001142473;geneB_transcript_strand_disagree=NM_001193338;geneb_utr_codons=7;geneB_transcript_strand_disagree=NM_005449 ,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 LYZ chr12 69747291 + 3utr GOSR1 chr17 28818656 + intron > 5 3 57 95 0.000 0.850 42 112 0.070 0.050 57 56 21353 139 CTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGAGCAAGACTCTGTCTAAAAAAAAAAAGAAAGGAAAAGACCAATGTGGTCCTGTAGGAGTTTAGAATCTAGGTGCTAGAGGAAAGTATATG CTX 6.31 LQ 1 other ,, NM_000239,NM_000239,NM_000239 ,, ,, ,, ,, ,, ,, NM_001007024,NM_001007025,NM_004871 ,, ,, ,, 246,435,441 558,747,753 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001007024,NM_001007025,NM_004871 ,, ,, MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr NA chr9 40655333 - intergenic > 13 0 405 172 0.000 0.990 504 1 1.000 0.010 406 406 73 0 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG ITX 6.04 LQ 0 other NM_024945 geneB_no_transcripts MV4_11_RNAseq_1 FRAT2 chr10 99092272 - 3utr MIR1244-3_locA,MIR1244-1_locA,MIR1244-2_locA chr12 9392192 - intergenic > 2 1 155 55 0.000 0.880 112 6 0.300 0.010 156 155 10 87 CCCAAACTTTAAGGTAGCTAAACCAATTTTTAAAAGATTCAATGGCTTGTTCATCCTCCAGATGTAGCTATTGATGTACACTTCGCAACGGAGTGTCTGAAATTGTGGTGGTCCTGATTTATAGGATTTCATAATTAAAATGTCTGCTGAATAAAAAAAAAAACCTTGTAAAAAAAGCAAAAATGACAACAGAAAAACAATCTTATTCCGAG CTX 6.00 LQ 0 other NM_012083 geneB_no_transcripts MV4_11_RNAseq_1 LIN7B chr19 49621717 + 3utr SRGN chr10 70864278 + 3utr > 2 1 166 31 0.000 0.000 64 6 0.300 0.020 167 168 41 101039 GGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAACAGCATCAGAGCTACTCGTCCTTGGAGTCTCGAGGTTGAAACCACAGATCTGGACGTTCACGTGCACTCTCTTCCTGTACAGTATTTATTGTTCCTGGCACTTTATTTAAAGATATTTGACCCTCAAAAAAAAAAAAAAAAAAATAATGAAACACAGTG CTX 6.00 LQ 0 other , NM_018111,NM_022165 , , , , , , NM_002727,NM_002727 , , , , 477,477 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_002727;geneb_utr_codons=13 , , MV4_11_RNAseq_1 LINC00987 chr12 9392628 + 5utr DDX5,MIR3064 chr17 62495747 + 3utr ? 2 2 118 331 0.890 0.000 12 110 0.370 0.000 119 120 41 2413 CTCTACTCGAAGGTGACCACGTTTAGATTCTGAGACGGGAAGGGGAGGGTGAATAGGTCACGGCGGCCTTTTTTTTTTAGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTCGTCGGTCTTCAAATATTTTTTATTGGAAGGCCATGCATTGCCTTCATTTATTGTATTTCAAATCACTGTACATTTACTTTTGTGAAAACACTGCCTGCATTTTCTAGTACAAAAAAAAACCTAAAAATTGTTTCAGGAATGTAGAGAAATATCCAACTTAAATAGCGAAAAAGTGCACCATAATTACTGCTGCACTGCAGTCATTTCTGCAATTCCCATGTTTCTTAAATAACTATCTTGTCAGATAACACACAATATAAAGAGCAATTATGAAAAACAGACATTTACATATACTTCTAAAGTCTTATTGGGAATATCCTGTTGGCATTGGATAAC CTX 6.00 LQ 1 other unhandled orientation ? MV4_11_RNAseq_1 BDH2 chr4 103999718 - 3utr PLAC8 chr4 84035868 - 5utr > 0 6 87 296 0.490 0.040 1 117 0.000 0.290 87 95 54 1441 CTTCAATAGCTTACAGTAAAAGGAGTAAAGGAGTTCAGCCTCAAAACGATATTGTTGACCTGTTATGTTATGAAAAATAATCCAGTGGTGAGATTCTCTCCCAGGCCACAAGACATTTCCTGCTCGGAACCTTGTTTACTAATTTCCACTGCTTTTAAGGCCCTGCACTGAAAATGCAAGCTCAGGCGCCGGTGGTCGTTGTGACCCAACCTGGAGTCGGTCCCGGTCCGGCCCCCCAGAACTCCAACTGGCAGACAGGCATGTGTGACTGTTTCAGCGACTGCGGAGTCTGTCTCTGTGGCACATTTTGTTTCCCGTGCCTTGGGTGTCAAGTTGCAGCTGATATGAATGAATGCTGTCTGTGTGGAACAAGCGTCGCAATGAGGACTCT DEL 5.97 LQ 0 other 0,0,3,3 NM_020139,NM_020139,, ,,, 10,10,, ,,, ,,, ,,, ,,, NM_001130715,NM_016619,NM_001130715,NM_016619 -26,-26,-26,-26 1,1,, tuple,tuple,tuple,tuple ,,, 348,348,348,348 33,33,, ,,, SIAYSKRSKGVQPQNDIVDLLCYEK*SSGEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,SIAYSKRSKGVQPQNDIVDLLCYEK*SSGEILSQATRHFLLGTLFTNFHCF*GPALKMQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAMRT,, BDH2:NM_020139[1,10]-PLAC8:NM_001130715[1,4];BDH2:NM_020139[1,10]-PLAC8:NM_016619[1,5];; geneB_transcripts=NM_001130715,NM_016619;geneb_utr_codons=13 ,,, 2,2,, MV4_11_RNAseq_1 NPTN chr15 73853191 + 3utr MRS2 chr6 24425344 + 3utr ? 3 0 161 70 0.440 0.000 138 1 0.040 0.000 162 163 356 170 ATCACTAGATGGCAGCAGTGCATTTTAGAGCTTTGCCAATTTAACAGCTGCATTAAGTAAAAAATGGCGCATGCATGATCTGATCCTCAGAGGACCTTTTCACTTCTATTTAAATATTTTAACAAAGGAAAAAAAAAAGCAACATTCACAGCACATCAAGCATTACGAATCTCTTAGGATTTTTAAGATTGTATTTGATAATACTTATATTTCACAGGGCACACTTTTGGC CTX 5.66 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 FLJ37453 chr1 16154865 + intergenic STAG3L1_locA,STAG3L3 chr7 72474255 - 3utr > 0 4 71 143 0.650 0.760 1 118 0.000 0.020 74 85 22 348 GTGTCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATGGAGCCGCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCATCATAGCCGGAAACAG CTX 5.59 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 TIAL1 chr10 121336963 - coding PTDSS1 chr8 97346651 + 3utr > 3 0 99 69 0.230 0.000 107 1 0.010 0.000 144 167 889 1166 ATTGTTGACTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGTCTGGGTTAACAGATCAGCTTATGAGACAGACATTCTCACCATTTGGACAAATTATGGAAATAAGAGTTTTCCCAGAAAAGGGCTATTCATTTGTCAGATTTTCAACCCATGAAAGTGCAGGTCCCATGTGAGGTGCTGGTGAGTATTACCTTTCATCTGTGCCATGCTCTAGAACCTTGACCTTGATAG CTX 5.33 LQ 0 CLoss ,,, NM_001033925,NM_001033925,NM_003252,NM_003252 ,,, ,,, ,,, 788,788,737,737 ,,, ,,, NM_001290225,NM_014754,NM_001290225,NM_014754 ,,, ,,, ,,, ,,, 984,1422,984,1422 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001290225,NM_014754;geneb_utr_codons=13 ,,, ,,, MV4_11_RNAseq_1 TBATA chr10 72553863 - intergenic ARIH2 chr3 49021035 + 3utr > 0 3 77 149 0.970 0.060 1 146 0.010 0.030 83 74 0 220 GTAAGGAGCTGAGTTCTTAAAGACTGAAGACAGGCTATTCTCTGGAGAAAAATAAAATGGAAATTGTACAATTATAAAAAAAAAAAAAAAAAGGCAAACTATAGGATAACACAGAGCCCTTTTTGAAAATAAATTGGCATTGGAGTGTTTTACCCTCTAGCTGTTTTACTTAGAATGTAACATATGCTGCCTACCCACCTCAAAATGTCTGTACTGCAAGAGG CTX 5.32 LQ 0 other 0 NM_152710 NM_006321 1482 geneB_no_inframe_contig_found geneB_transcripts=NM_006321;geneb_utr_codons=13 MV4_11_RNAseq_1 FRMD5 chr15 44280667 - intron EIF4G3 chr1 21153001 - intron > 0 3 87 161 0.970 0.000 1 176 0.000 0.100 96 89 0 122 GGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTGAATAAAAGTGCACACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGACTCACATTCTGGCTGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTGGAGACCAGTCTGGCCAACATGGCAAAATCCCATCTCTAC CTX 5.28 LQ 0 other ,,,,,,,, NM_001286490,NM_001286490,NM_001286490,NM_001286491,NM_001286491,NM_001286491,NM_032892,NM_032892,NM_032892 ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,103,103,103 ,,,,,,,, ,,,,,,,, NM_001198801,NM_001198802,NM_003760,NM_001198801,NM_001198802,NM_003760,NM_001198801,NM_001198802,NM_003760 ,,,,,,,, ,,,,,,,, ,,,,,,,, 4209,4119,4101,4209,4119,4101,4209,4119,4101 4866,4776,4758,4866,4776,4758,4866,4776,4758 ,,,,,,,, ,,,,,,,, ,,,,,,,, ;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001198801,NM_001198802,NM_003760 ,,,,,,,, ,,,,,,,, MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr NUP107 chr12 69109246 + intron > 22 0 124 66 0.000 0.030 484 0 0.080 0.000 125 125 21481 240 ATTTTATATTAAGCCTACAACATTTTTCAGTTTGCAAATAGAACTAATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAATAAATGAATTTATTTGTGTATAAACTCAGG INS 5.22 LQ 3 other NM_000239 NM_020401 970 2778 geneB_no_inframe_contig_found geneB_transcripts=NM_020401 MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr NBPF20,NBPF8_locA,NBPF9_locA,NBPF25P_locA,NBPF10,NBPF25P_locB,NBPF12 chr1 145186062 - intron > 13 2 405 178 0.000 0.990 504 115 1.000 0.000 405 406 73 43 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG CTX 5.04 LQ 0 other , NM_024945,NM_024945 , , , , , , NM_001277444-locA,NM_001278267 , , , , , , , , ; geneB_CDS_mapping_exception=NM_001277444-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001277444-locA;geneB_CDS_mapping_exception=NM_001278267:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001278267 geneB_transcripts=NM_001277444-locA,NM_001278267 , , MV4_11_RNAseq_1 RMI1 chr9 86618971 + 3utr OSTF1 chr9 77738057 + intron > 13 0 405 171 0.000 0.990 504 1 1.000 0.000 406 406 73 766 TTTTTATTTTGCTGATTATAATATTTGGTATATTTAAGGTAATCTAGTTAACTAGATGCTATTTCATAGATTATATTGAATGATTTAAAACTTTATTTTCAAGGATAGTTTATTTTAAATGGCATATTGAAAACATCATTATTAAGATCCAGTAGGTAGGACATTTATTGGATTAAAATGAAGCATTTATCTATGTCTTTAGGTGTCATTGTTCCCTTTCTGAATTAGCTGTACATATAAGCCTTCCTTTGGTTTTAAGTACTGATTTTTTTTTAAAAAAAAGAGGGACTGTTTACCATTCTTCCACTGTGCTGTTATAAAGTTGTATTTGAAAGGTAATGTTGTTTTTATTAATCTTTTGTCTTAAAATAATTTAAAGTGCTTTGAATTTTAAAACATTAAACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCTCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAG INS 5.04 LQ 0 other NM_024945 NM_012383 82 645 geneB_no_inframe_contig_found geneB_transcripts=NM_012383 MV4_11_RNAseq_1 CPTP chr1 1263657 - 3utr GNB2L1 chr5 180670840 - 5utr ? 2 2 156 49 0.290 0.000 96 14 0.070 0.020 158 159 49 6188 CGGGACTTCCTGGGCCCTTCTGTGAGGAGCCTTGGTCTCAGCTTCCGGCTGTCCTGCCCCCAGTCTGCCTGGCACGCTGAGGGGCAAACAAGGCAGGAGAGGCGGGGAGAGCCCCACAGTGCCCAGACTGCTGTTGAGGGTTTCTGCCAGCCAGGGCCATCCTCGTCGCTGCAGCGACACACGCTCTCGCCGCCGCCATGACTGAG CTX 4.97 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 FLJ37453 chr1 16154865 + intergenic STAG3L1_locB chr7 74990642 + 5utr > 0 3 71 143 0.650 0.750 1 102 0.000 0.080 74 85 22 119 GTGTCGCACTGCAAACGCGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATGGAGCCGCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTGCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGAAAACAG CTX 4.83 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 PDZRN4 chr12 41757506 + intron CEP97 chr3 101485784 + 3utr > 0 4 69 137 0.510 0.000 1 149 0.010 0.210 72 64 0 43 TCTGCTAGTGTGGAGATAAATCATATTATGGCCAAGGGTCATGATGGCAGGAGTAATCAGAGGTGTTCTTGTTTTTTAAAGAGATGGAGGCTGGCTCTGTTGGTGCGGTGCCATGATCATAGTTCACTATAACCTCGAACTCCTGGCTCAAGTGATCTCCCACTTCAGCCTCCCGAGTATCTGGGATTATAAGCAAGAGCC CTX 4.63 LQ 0 other NM_001164595 844 NM_024548 2598 geneB_no_inframe_contig_found geneB_transcripts=NM_024548;geneb_utr_codons=13 MV4_11_RNAseq_1 WDR47 chr1 109573017 + intron PITX1 chr5 134364263 - 3utr > 0 21 72 136 0.900 0.000 1 203 0.000 0.130 78 66 1 1172 AAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAGACGTCGGAGAAAAGTGCCGCGAAAAAAAGGATGAGTTGCAATTTCTCTCGGGATGGGGCGGGGGGTGGGTGTGTGTTCCCCCGGGGCCCGGAGGCCCCCTCCGCGGGGGGCAC CTX 4.53 LQ 0 other ,, NM_001142550,NM_001142551,NM_014969 ,, ,, ,, ,, ,, ,, NM_002653,NM_002653,NM_002653 ,, ,, ,, ,, 945,945,945 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_002653;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 GCDH chr19 13005739 + intron SLC35E1 chr19 16663169 - 3utr > 0 3 72 314 0.800 0.040 1 100 0.000 0.090 85 75 340 137 CTACTTCTAAGTCTGAATCCAGTCAGAAATAAGATTTTTTGAGTAACAAATAAATAAGATCAGACTCCATCTCAAAAAAAAAAAACAAAACAAAACCAAGTTCCCACTGGTGATGCCTGTCTGACACGTTTTGGTATTTAGTAGGAAATGAAGTGTTTCGAAGCTTCGAGAGAAGCTTCAAAATTGTCACAATTGCTGAAAACAGAATGAATCGTGAACATTATCTCAATATTTTGTATAATAGACAAGACCACAGTGTTTTGGTTCCCTGACCTGTTTTTGTGTTTATGTTAGGATCTGAATCATGTTCTGGGTAAGGGGACGAGGAGCGAACACTGCACTAAGATTTGGTTTGCCAAATCAGATTCTTTGGTCAAGAGTCAGTTTGGA ITX 4.46 LQ 0 other , NM_000159,NM_013976 , , , 506,506 , , NM_024881,NM_024881 , , , , 1233,1233 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_024881;geneb_utr_codons=13 , , MV4_11_RNAseq_1 NA chr15 53229254 + intergenic GTF2A2 chr15 59949669 - 5utr > 0 3 75 137 0.970 0.070 1 112 0.010 0.330 78 90 0 554 CACAAAACATTCTCCTTTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTACTAAACTTAAAGGAGAAGTAGGAACCTCCTGCCGGGCTCGTGGCGGCTTCTGTCCGCTCCGCGGCGGGAAGCGCCTTCCCCACAGGACATCAATGCAAGCTTGAATAAGAAAAACAAATTCTTCCTCCTAAGCCATGGCATATCAGTTATACAGAAATAGA ITX 4.29 LQ 0 other 0 NM_004492 -37 tuple 330 geneA_no_transcript_IDs_found geneB_transcripts=NM_004492;geneb_utr_codons=13 MV4_11_RNAseq_1 TBCK chr4 107074997 + intron FOXJ3 chr1 42650369 - intron ? 3 0 190 71 0.000 0.490 122 1 0.310 0.000 191 182 51 140 CTGAAACAAGAGTGTTGAAGTCTCCAGGTTTTATTGTATGGGTTCCATCTCTCTCTTTAGTGCTAATAAGTTGGGTACTCCAGTACTGAATTCATATATGTTTACACTGCTTATATATCCTCTTGCTGAACTGACCCATTTACCATTATATAATGACTTTCTTCGTCTCTTCTTAGAGTTTTTTTTTTCCATAGCATGTTACATACTATTTAATTTACTTTGTTTGCCCCTACCCAACATGCCCAAGAATAC CTX 4.21 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 KCTD14,NDUFC2-KCTD14,NDUFC2 chr11 77784151 + coding C9orf114 chr9 131591128 - coding ? 3 1 56 159 0.000 0.330 12 55 0.020 0.040 56 55 3715 272 GTCCCTCACAGCATACAGGTAGTCTTCACGTTTTACAAGATAATATCCAGCAAAAAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCGGGCGGCCCTACACACTGAGCGTAGCCCTGCCGGGCTCCATCCTGG CTX 4.02 LQ 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 BASP1 chr5 17267929 - intron SATB1 chr3 18390239 - 3utr > 0 6 68 263 0.000 0.000 1 132 0.000 0.030 70 58 48 1114 CAATGTGAAGCTTGCTGAAAATTAGAAATAAAAAAAATTTTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAGTTTGTTACTCTATTGTATGTTACAAAAGAACTATAGACTGTGGAATGCAGTTTAAAGATGACATATGCCAACAAATGCCTTGTATTATATGGCACTGCCGTAATTCAAATTTGTTTTTATTTTGGAAATAAAAGTTCACTGTACTTTTTTTTCATTCTCATTGTTACATGATTTTTTAAAAAAAGGAAAAGAAAATGTGAAACACAATTTAGTCCTCATTATTTATTTGTAGATCCTGC CTX 3.99 LQ 0 other ,,,,, NM_001271606,NM_001271606,NM_001271606,NM_006317,NM_006317,NM_006317 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001131010,NM_001195470,NM_002971,NM_001131010,NM_001195470,NM_002971 ,,,,, ,,,,, ,,,,, ,,,,, 2292,2388,2292,2292,2388,2292 ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001131010,NM_001195470,NM_002971;geneb_utr_codons=13 ,,,,, ,,,,, MV4_11_RNAseq_1 PPP1R12B chr1 202440924 - intron SERBP1 chr1 67875024 - 3utr > 1 4 273 234 0.890 0.050 37 40 1.000 0.080 274 274 10 244 AGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTAAAAGCACTCTGAGTCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATAAAAAAAAAAAAACCCACAGAAAAATGTAGGCAGCCCAGCATAAGATACCGCCTTTCACAGAAATGTTTGCTGACCCCGGAACTGTCACTCTCGGGTTACAAGAGTTTGTTTCTTTGAAACAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC DEL 3.96 LQ 0 other ,,,,,,,,,,, NM_002481,NM_002481,NM_002481,NM_002481,NM_032103,NM_032103,NM_032103,NM_032103,NM_032104,NM_032104,NM_032104,NM_032104 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001018067,NM_001018068,NM_001018069,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640,NM_001018067,NM_001018068,NM_001018069,NM_015640 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, 1227,1209,1182,1164,1227,1209,1182,1164,1227,1209,1182,1164 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001018067,NM_001018068,NM_001018069,NM_015640;geneb_utr_codons=13 ,,,,,,,,,,, ,,,,,,,,,,, MV4_11_RNAseq_1 GRB14 chr2 165430304 - intron LOC101929596 chr2 38709684 - intron > 1 3 122 141 0.660 0.660 91 23 0.200 0.010 122 131 30 411 ATAACCACATGACCTAATTTAGAATCAATCTTGGCATCCAGTCTTGCATTTCTAATCAAATTTACAATCCACCTTTCAGCTTCTTCTGGAGTCATGTTCAATTTATCTGCCAACATGTTAATAGCCAATCTGCAGACAGACACTGGCAACATTGCGGACACCCTCCAGGAAGCGAGAATGCAGAGTTTCCTCTGTGATATCAAGCACTTCAGGGTTGTCGATGCTGACATTGTCGAAGACCTGCTGGCGGAACAGCACAAAGGAGAAGGGGG DEL 3.88 LQ 0 other NM_004490 325 geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 96913955 - intergenic GTF2A2 chr15 59949669 - 5utr > 0 3 76 137 0.970 0.070 1 112 0.000 0.330 79 90 759 554 CACAAAACATTCTCCTTTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTACTAAACTTAAAGGAGAAGTAGGAACCTCCTGCCGGGCTCGTGGCGGCTTCTGTCCGCTCCGCGGCGGGAAGCGCCTTCCCCACAGGACATCAATGCAAGCTTGAATAAGAAAAACAAATTCTTCCTCCTAAGCCATGGCATATCAGTTATACAGAAATAGA CTX 3.36 LQ 0 other 0 NM_004492 -37 tuple 330 geneA_no_transcript_IDs_found geneB_transcripts=NM_004492;geneb_utr_codons=13 MV4_11_RNAseq_1 FLVCR2 chr14 76062586 + intron NA chr13 55014993 - intergenic > 0 6 68 138 0.530 0.910 1 232 0.000 0.120 74 60 11 473 TGAACTTTCTAGTGCGGATAGTTACGGTGTCGTTCATGATGGCGATCTATCTTCAGACAGCCAAGGAGGAAAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACA CTX 3.29 LQ 0 other NM_017791 669 geneB_no_transcripts MV4_11_RNAseq_1 PTCH2 chr1 45309717 + intergenic TTC17 chr11 43472730 + coding > 0 3 147 239 0.970 0.000 0 108 1.000 0.020 152 172 6 126 GATCTCACTTTATTTTTCTTGTATAAAAACCCTATGTTGTAGCCACAGCTGGAGCCTGAGTCCGCTGCACGGAGACTCTGGTGTGGGTCTTGACGAGGTGGTCAGTGAACTCCTGATAGGGAGACTTGGTGAATACAGTCTCCTTCCAGAGGTCGGAGAGTCAGTTAACAGAGGTATTACAAAATCTCGGCCAAGACCAATATCCACAACAGTCGCTTGAACAGATTGGCACCCGAATTGCCAAAGTTTTGGAAAAGAACCAGACGTCCTGGGTCCTCTCCAGCATGGCAGCCCTCTACTGGAGGGTGAAAGGCCAAGGAAAGAAGGCAATCGACTGCCTCCGCCAGGCTCTGCACTATGCGCCACACCAGATGAAGGATGTGCCCCTGATTAGCCTGGCCAACATCTTGC CTX 3.24 LQ 0 NLoss 3 NM_018259 983 blat 2947 3426 geneA_no_transcript_IDs_found geneB_transcripts=NM_018259 MV4_11_RNAseq_1 MIR6723 chr1 566297 - intergenic JMJD1C chr10 65006985 - intron > 0 3 71 139 0.830 0.000 1 137 0.000 0.180 71 63 2433 30 GTGATTTTCATATTGAATTGCAAATTCGAAGAAGCAGCTTCAAACCTGCCGGGGCTTCTCCCGCCTTTTTTTCCTCAGTCTAGCTAAATATTTATTGATTTTATCTATCTTTTCAAAATCCAGCTTTTCATTTTTTTAAAATTTTCTTCTGTTTTTTGTTTTTTTGTTTTTGTTTTTTTTTTTTTGTCTCAGTTTATTTCCG CTX 3.15 LQ 2 other , , , , , , , , NM_001282948,NM_032776 , , , ,447 7077,7623 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001282948,NM_032776;geneb_utr_codons=13 , , MV4_11_RNAseq_1 IPMK chr10 59972086 - intron RUNX3,MIR6731 chr1 25227543 - 3utr > 0 5 71 146 0.890 0.000 1 208 0.000 0.130 75 79 8 100 ATTTATTTGGAGTGGAGGCATTGTTTTTAAGAAAAACATGTCATGTAGGTTGTCTAAAAATAAAATGCATTTAAAAAAAAAAAAAAAAAAAAAAACAAAAAAACAAAAAAAAAACAAAACAGTTTTTAAAACTGATTTTAGAAAAAGAAGCTTAATCTAACGTTTTCAAACACAAGGTCTCTTACAGGTATAGTTCCGTGATTATGATAGCTCTGTGATTATAAG CTX 3.10 LQ 0 other , NM_152230,NM_152230 , , , 546,546 , , NM_001031680,NM_004350 , , , , 1290,1248 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001031680,NM_004350;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CCND2 chr12 4414154 + 3utr CCND2 chr12 4414155 + 3utr > 2 9 147 152 0.000 0.000 82 218 0.030 0.280 147 147 233 227 CTGCTGGCCAACTCTTACATCCCCAGCAAATCATCGGGCCATTGGATTTTTTCCATTATGTTCATCACCCTTATATCATGTACCTCAGATCTCTCTCTCTCTCCTCTCTCTCAGTTATATAGTTTCTTGTCTTGGACTTTTTTTTTCTTTTCTTTTTCTTTTTTTTTTGCTTTAAAACAAGTGTGATGCCATATCAAGTCCATGTTATTCTCTCACAGTGTACTCTATAAGAGGTGTGGGTGTCTGTTTGGTCAGGATGTTAGAAAGTGCTGATAAGTAGCATGATCAGTGTATGCGAG Internal_dup 3.00 LQ 2 ITD NM_001759 NM_001759 870 geneB_no_inframe_contig_found geneB_transcripts=NM_001759;geneb_utr_codons=13 MV4_11_RNAseq_1 MIR6723 chr1 569095 - intergenic RYR2 chr1 237766386 + intron > 3 0 141 72 0.670 0.870 92 1 0.100 0.100 142 142 117 0 TTTGGGGTTAGTTTGATTAGTTATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCA ITX 3.00 LQ 0 other NM_001035 4683 14904 geneB_no_inframe_contig_found geneB_transcripts=NM_001035 MV4_11_RNAseq_1 PWP1 chr12 108113840 - intergenic PIGK chr1 77595389 - intron > 0 84 64 132 0.480 0.950 1 1323 0.010 0.240 69 58 0 579 CCGCTGAATTTACTCCCGTGCCATAAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCCTTTTAATTACATTTATTTTAATGCTGAATTTACTCCCGTGCCATAAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTTCTGGGCAACCTCCTCTTCTGGTTTAGGAACAATCTGTTC CTX 2.86 LQ 0 other 0 NM_007062 NM_005482 987 1188 geneB_no_inframe_contig_found geneB_transcripts=NM_005482 MV4_11_RNAseq_1 PPP6R2 chr22 50798486 - intron ERP29 chr12 112460347 + coding > 4 0 132 68 0.790 0.480 179 0 0.090 0.000 133 138 114 4082 CCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCGACATTGTGCCATTGCATTCCAGCCTCCATGACAGAGCAAGAGTCCATCTCAAAAAAAAAAAAAAAAAAGGGCTGATTGAGAAGAACAAGATGAGTGACGGGAAGAAGGAGGAGCTCCAGAAGAGCTTAAACATCCTG CTX 2.81 LQ 0 NLoss 0,0,0,0,3 NM_001242898,NM_001242899,NM_001242900,NM_014678, ,,,, 1,1,1,1, ,,,, ,,,, ,,,, ,,,, NM_006817,NM_006817,NM_006817,NM_006817,NM_006817 226,226,226,226,226 3,3,3,3, blat,blat,blat,blat,blat 677,677,677,677,677 786,786,786,786,786 46,46,46,46, ,,,, PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL,PATWEAEAGESLEPRRWRLQ*ADIVPLHSSLHDRARVHLKKKKKKGLIEKNKMSDGKKEELQKSLNIL, PPP6R2:NM_001242898[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_001242899[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_001242900[1,1]-ERP29:NM_006817[3,3];PPP6R2:NM_014678[1,1]-ERP29:NM_006817[3,3]; geneB_no_inframe_contig_found geneB_transcripts=NM_001034025,NM_006817;geneb_utr_codons=13 ,,,, 1,1,1,1, MV4_11_RNAseq_1 NA chr1 214976630 - intergenic CHTF8 chr16 69152515 - 3utr > 0 4 72 126 0.950 0.550 1 206 0.010 0.010 76 79 0 422 CTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGAAGCCTGCTGTGCTTTCGTCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTTTTCCTCAGGGATACATTGGCCTGCAGGTCCCAGTTCACATGTAGTCCCC CTX 2.75 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001039690,NM_001040146,NM_138612 ,, ,, ,, ,, 366,366, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001039690,NM_001040146,NM_138612;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_138612 ,, ,, MV4_11_RNAseq_1 MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12264452 - intergenic C21orf33 chr21 45564930 + 3utr > 0 3 75 362 0.870 0.000 1 20 0.000 0.050 76 73 41 870 GGCCTCTCTACTCGAAGGTGACCACGTTTAGATTCTGAGACGGGAAGTGGAGGGTGAATAGGTCACTTTTTTTTTTTTTTTTTTTCTTTGCCGAAACCTGCAGGCGTTCTCTCTCTAAGGAGGATGTGCTGCAGTGCATGGGGGATGTTTCTTCCTGGGTGTGGCTGGGCTGCTCTCACATACAGAGGCCGAGGGGCCAATTCGTTCTCTGCCACAGGGACTTGCCTCACTGTGTCCCAAAAACAAATCGCAGCCAGCTTTTCCAGAAATAGAAAATTCTGCCGTCTGAGGTTTTATACTTCAGGTTAGTTAGTTTTTGGAAGGAAGAACATTTTTAGGTTTGCAAGCCTCCTGATCAGGAAACCAGAAATACCACATTTATGGACCATGAAAGGTTGGTTCTTGACTCTGAAGGGACTTTTGAGTTAATCAGCG CTX 2.60 LQ 0 other , , , , , , , , NM_004649,NM_198155 , , , , , , , , ; geneB_CDS_mapping_exception=NM_004649:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_198155:-2 geneB_transcripts=NM_004649,NM_198155;geneb_utr_codons=13 , , MV4_11_RNAseq_1 PLEKHA7 chr11 16996174 - intron MAPK1 chr22 22104394 - intergenic > 3 0 92 67 0.870 0.000 127 1 1.000 0.010 93 85 18 1 AAGAGAAAGGGCCAAGTTATCCAGTTTTAAGTGTCATTTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTCACTTCAAAAAAAAAAAAAAGAAAAAGGAAAAAAAAATCTCAGCTTGGTTCCACAAGCCCTGTAGTCCCATCTACT CTX 2.46 LQ 0 other 0 NM_175058 221 NM_002745 geneB_no_transcripts MV4_11_RNAseq_1 RGS7 chr1 241161825 - intron ZNHIT6 chr1 86173619 - coding > 0 4 76 144 0.880 0.000 1 192 0.010 0.060 90 90 0 155 ATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGTGAAGCAGGAGACGGATAGTAGTTTAGTGGTAAAAGAAGCGAAGGTGGGTGAACCAGAGGTAAAGGAAGAGAAGGTAAAGGAAGAGGTAATGGACTGGTCAGAAGTGAAGGAAGAGAAGGATAACTTGGAGATAAAACAG DEL 2.40 LQ 0 NLoss 0,0,0,0,0,0,0,0,3,3 NM_001282773,NM_001282775,NM_001282778,NM_002924,NM_001282773,NM_001282775,NM_001282778,NM_002924,, ,,,,,,,,, 3,3,3,3,3,3,3,3,, ,,,,,,,,, 176,176,176,176,176,176,176,176,, ,,,,,,,,, ,,,,,,,,, NM_001170670,NM_001170670,NM_001170670,NM_001170670,NM_017953,NM_017953,NM_017953,NM_017953,NM_001170670,NM_017953 78,78,78,78,116,116,116,116,78,116 2,2,2,2,1,1,1,1,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 232,232,232,232,346,346,346,346,232,346 1296,1296,1296,1296,1413,1413,1413,1413,1296,1413 31,31,31,31,30,30,30,30,, ,,,,,,,,, ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQ,, RGS7:NM_001282773[1,3]-ZNHIT6:NM_001170670[2,11];RGS7:NM_001282775[1,3]-ZNHIT6:NM_001170670[2,11];RGS7:NM_001282778[1,3]-ZNHIT6:NM_001170670[2,11];RGS7:NM_002924[1,3]-ZNHIT6:NM_001170670[2,11];RGS7:NM_001282773[1,3]-ZNHIT6:NM_017953[1,10];RGS7:NM_001282775[1,3]-ZNHIT6:NM_017953[1,10];RGS7:NM_001282778[1,3]-ZNHIT6:NM_017953[1,10];RGS7:NM_002924[1,3]-ZNHIT6:NM_017953[1,10];; geneB_transcripts=NM_001170670,NM_017953 ,,,,,,,,, 0,0,0,0,0,0,0,0,, MV4_11_RNAseq_1 NBPF20,NBPF8_locA,NBPF9_locA,NBPF25P_locA,NBPF10,NBPF25P_locB,NBPF12 chr1 145136472 + intron GPATCH1 chr19 33617552 + coding > 7 0 303 68 0.520 0.000 78 1 0.100 0.000 304 316 191 170 GTCAGGATTCTTACATCAATTATCTCAAATGAGACCATGCAAAGCAATTCAGTGTATACAACAATCATTTTTCCCCTTCAGTTCTGCTGCTTTATACAACAGTGTGATTGACAGAAAATTGGATGGCATGTGCCTGGTCAGAAAATGTCATCTGTTTACAAAATAACATCATGCAGCACAGTTTCTACTTTGTCTGCAAGTCAATTCACAAAAACTACTTATTTTCTGTTTTTTATTTGGGAGGCACATGGAACTGAAAAATTTAGCTGCCCAATTTTATTCAACTACCCCACCAAAAAAAAAAAAAAAAATCACAAAGTAGTAGCTCCGAGAGTTCCGACAGCAGCGACAGCCAGAGTGACGAGGAAACCGCAGACGTGTCG CTX 2.36 LQ 0 NLoss , NM_001277444-locA,NM_001278267 , , , , , , NM_018025,NM_018025 , , , 2678,2678 2796,2796 , , , ; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_018025 geneB_transcripts=NM_018025 , , MV4_11_RNAseq_1 LOC101927668,MACC1 chr7 20042533 - intron B2M chr15 45003728 + 5utr > 3 0 248 70 0.970 0.640 76 0 0.010 0.000 249 235 2487 1568 CTGGCGCTTTAGTTGAACCCAGGTACCTTTCTCTTTGGCTTCTTTCTTTTTCTGATCATTTTCCTTCACACGTTTCAGGAAGCTATCTCGGCTCTTAGAGTGCTTAATGTGCTCAATACGCACATTAATTCTCTTGGCAAGAATCTTGCCCTTAACTTGTTTGTTTACAACAATGCCAACAGCATGCTGGGTAACATTGTAGACTCTTCCAGTTTTGCCATGGTAACACTTGTGGGGCATTCCTTTTTGAACAGTATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCT CTX 2.25 LQ 0 other 3 NM_004048 -5 tuple 360 geneA_no_transcript_IDs_found geneB_transcripts=NM_004048;geneb_utr_codons=6 MV4_11_RNAseq_1 MEF2B,MEF2BNB-MEF2B,MEF2BNB chr19 19287823 - 3utr MEF2B,MEF2BNB-MEF2B,MEF2BNB chr19 19287823 - 3utr > 7 1 137 75 0.000 0.000 141 71 0.040 0.010 137 136 319 319 TCCCTTGTCCTAGGTTCCTAGTGATTGGTTCGAGATGGACACGTGACCCAATGAGCGGCCTTTCCTGGGAGTTCTACCAGGAGCATCAGGAAGGTTGAGCTGGGTGTATGGGAACCAGGCCGGGGCGAGGGGTTCCAGGGGGGACCTGAGAACATTGCGTGGAGCCCTGGATCCAACTGTACCTGACACTAGCCAATTTCATTTCTTCAG Internal_dup 2.12 LQ 0 ITD ,,, NM_001145784,NM_001145784,NM_005919,NM_005919 ,,, ,,, ,,, ,,, ,,, ,,, NM_001145784,NM_005919,NM_001145784,NM_005919 ,,, ,,, ,,, ,,, 360,1098,360,1098 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001145784,NM_005919;geneb_utr_codons=13;geneb_utr_codons=10 ,,, ,,, MV4_11_RNAseq_1 LINC00910 chr17 41428845 - intergenic IGHV chr16 32254564 + 5utr > 6 0 78 68 0.000 0.870 266 1 0.710 0.010 132 142 17 0 CTCTTTGTTCTATTACCATAATGATCTCTGTTCTATTATGATTACCTTGGGGGAAACCAGGCCACACAGAGTTAGGAGCTGAAGGGCCACAGTGAGAGGTGACCAGAAGACGAGAGTGTGAGCCCTCATTCACGCCCAGAGAAGGGCCGCTGGAGGGCTCCTTGGCCTAGCGGTAATGCCAGTGCCTGGGAAGGCCCTGGTTACTTAGCAGGCC CTX 2.04 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 DENR chr12 123255603 + 3utr FAM120A chr9 96327957 + 3utr > 2 1 82 62 0.700 0.000 138 6 0.080 0.010 83 98 26 1311 CACAGTTCTTAGCAAATGCAGTTAAAATCCATAAATAGCCAGGAGTGGATGTTACTCCAGGAAAATGCAGGATTAAAATTGTCCTTGTGTTAAAAAAAAAAAAAACCCTTTGATCTTAAAAAAAAAAAACCACCCCCCCCTTCTGTAGCAGGAAAAAAATATTTTTTTTTTTAGACATTTCCCAACAAAATTTTTA CTX 2.01 LQ 0 other , NM_003677,NM_003677 , , , , , , NM_001286722,NM_014612 , , , , 3354,3357 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001286722,NM_014612;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CLTC chr17 57768073 + coding UCK2,MIR3658 chr1 165788579 + intergenic > 5 0 254 70 0.010 0.930 105 1 0.020 0.010 255 265 733 1 TGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAGGTGGATAAATTAGATGCTTCAGAATCACTGAGAAAAGAAGAAGAACAAGCTACAGAGACACAACCCATTGTTTATGGTCAGCCCGGGAGCGGCCAAAATGAAGTTTAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACC CTX 1.59 LQ 1 CLoss , NM_001288653,NM_004859 , , , 4915,4903 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 PNPT1 chr2 55907990 - coding AMBRA1 chr11 46450322 + intron > 0 3 67 141 0.480 0.940 1 164 0.000 0.040 69 82 209 634 CACAGGTTCTGTGTAATCTGTTAGCAGTAGATGGTGTAAATGAGCCTGATGTCCTAGCAATTAATGGCGCTTCCGTAGCCAGGTATCTCTGTCAGCTTCCCCTCTTGTGAGTCTCGCAGGTCGCTCACCCTCCAGACCTTTAGGCCGAGGCCTGCCAGTCTCTGGACGGCTACGGCGTAGGGTGGCAGGCACAATCTCCGGGGGCAGATGAAGGTAATCACGG CTX 1.56 LQ 0 CLoss ,,, NM_033109,NM_033109,NM_033109,NM_033109 ,,, ,,, ,,, 517,517,517,517 ,,, ,,, NM_001267782,NM_001267783,NM_001300731,NM_017749 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001267782,NM_001267783,NM_001300731,NM_017749;geneB_transcript_strand_disagree=NM_001267782;geneB_transcript_strand_disagree=NM_001267783;geneB_transcript_strand_disagree=NM_001300731;geneB_transcript_strand_disagree=NM_017749 ,,, ,,, MV4_11_RNAseq_1 CNPY2,PAN2 chr12 56704742 - coding TP53BP2 chr1 224051628 - intergenic > 3 0 299 70 0.000 0.930 97 1 0.010 0.010 300 312 1029 0 GCCTTATGCCCGCTCAGAGGCCCACCTCACAGAGCTGCTGGAGGAGATATGTGACCGGATGAAGGAGTATGGGGAACAGATTGATCCTTCCACCCATCGCAAGAACTACGTACGTGTAGTGGGCCGGAATGGAGAATCCAGTGAACTGGACCTACAAGGCATCCGAATCGACTCAGATATTAGCGGCACCCTCAAGTTTGCGTGTGAGAGCATTGTGGAGGAATACGAGGATGAACTCATTGAATTCTTTTCCCGAGAGGCTGACAATGTTAAAGACAAACTTTGCAGTAAGCGAACAGATCTTTGATGCCGACAGGATGCAGAAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCG CTX 1.56 LQ 0 CLoss 0,0 NM_014255,NM_014255 , , , 505,505 , , NM_005426,NM_001031685 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 MYADM chr19 54377956 - 3utr FBL chr19 40325450 - coding > 3 0 299 76 0.000 0.840 94 0 0.040 0.000 300 304 171 11418 ATAAGAAAGCCGACAGGCAACCCAGAAAAGAGTTGAGAAAAAAGAAGAGTGGAAAAAGAGAAACAGGCTGGGTGCGGCAGCTCACACCGGTCCTCCCAGCTACTTGGGAGGATGGGGCAGGAGAATCGCTGGAACCCAGGAGGCGGGGGTTGCAGTGAGTCGAGATCGCACCACTGCGCTCCAGCCTGGGCCACAGAGTGAGAATCCGTCTTAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAGAGAAACAGCTCAGGGGTGAAAACAGGATGTGGGCAACAAAACAACACAGGAAGGAAACTGCATTGACTCCACAGCCTCAGCCGAGGCCGTGTTTGCCTCCGAAGTGAAAAAGATGCAACAGGAGAACATGAG DEL 1.50 LQ 0 NLoss 0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001020818,NM_001020819,NM_001020820,NM_001020821,NM_001290188,NM_001290189,NM_001290190,NM_001290191,NM_001290192,NM_001290193,NM_001290194,NM_138373, ,,,,,,,,,,,, 2,3,3,3,3,3,3,3,3,3,2,3, ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, ,,,,,,,,,,,, NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436,NM_001436 267,267,267,267,267,267,267,267,267,267,267,267,267 8,8,8,8,8,8,8,8,8,8,8,8, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 799,799,799,799,799,799,799,799,799,799,799,799,799 966,966,966,966,966,966,966,966,966,966,966,966,966 101,101,101,101,101,101,101,101,101,101,101,101, ,,,,,,,,,,,, IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM,IRKPTGNPEKS*EKRRVEKEKQAGCGSSHRSSQLLGRMGQENRWNPGGGGCSESRSHHCAPAWATE*ESVLKKKKKKRKKRKRETAQG*KQDVGNKTTQEGNCIDSTASAEAVFASEVKKMQQENM, MYADM:NM_001020818[1,2]-FBL:NM_001436[8,9];MYADM:NM_001020819[1,3]-FBL:NM_001436[8,9];MYADM:NM_001020820[1,3]-FBL:NM_001436[8,9];MYADM:NM_001020821[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290188[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290189[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290190[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290191[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290192[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290193[1,3]-FBL:NM_001436[8,9];MYADM:NM_001290194[1,2]-FBL:NM_001436[8,9];MYADM:NM_138373[1,3]-FBL:NM_001436[8,9]; geneB_transcripts=NM_001436 ,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0, MV4_11_RNAseq_1 NDC1 chr1 54231465 - 3utr CYP4Z2P chr1 47358486 - intron > 4 0 89 83 0.000 0.890 122 1 0.040 0.140 90 152 551 1 GGGAGACCAAGAGGAGAGAAGCATTTCCTTTGATGAAGTCACATCCTGTCTATGAGCCCACTAATGCTGTAACATTGGCCTGAAAGAGAAGCATTTCCTTTGATGAAGTCACATCCTGTCTATGAGCCCACTAATGCTGTAACATTGGCCAATCAGGTCAAACTTGTGGTCCAGGCGAGCCCAGGCCTCAGCAATGGCTGTGGTGTTGCTCAGCATGCACACAGCTCTCTGTACCTTGGCC DEL 1.44 LQ 0 other , NM_001168551,NM_018087 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 CXCL12 chr10 44910411 + intergenic C6orf120 chr6 170103149 + 3utr > 0 4 68 139 0.930 0.000 1 163 0.010 0.080 73 74 0 153 NCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGAGGGATATAAAACCCTCCATCTGTGAAGCTGATTGCAGTTTGCTGTGAACCTTGCTACTTGTACTTGGTTGAAGTTCTAGGTACCTTTAGTCAAGGGATGGAAAAATAAAGCCATACGCAGTTTTGTTACCTCAGTTACCN CTX 1.34 LQ 0 other 0,0,0,0,0 NM_001277990,NM_000609,NM_001178134,NM_199168,NM_001033886 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001029863,NM_001029863,NM_001029863,NM_001029863,NM_001029863 ,,,, ,,,, ,,,, ,,,, 576,576,576,576,576 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001029863;geneb_utr_codons=13 ,,,, ,,,, MV4_11_RNAseq_1 NA chr5 49909886 - intergenic NA chr5 49790542 - intergenic ? 6 11 140 35 0.000 0.000 124 26 0.040 0.340 140 140 160 31 TTATAAGACTCTTTTTTTCCAGAGATGGGAATCTTGCTATGTTGTCCACTCTGGAGTGCAGTGGCTATTCACAGGCTTGATCATTGCATACTACAGTCTTGAACTCCTGGACTCAAGTCTCCCAGTGGCTGGGACTACAGCTAGATGATGATATTCTGATATATGAGATGCAAG DEL 1.30 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NUDT4,NUDT4P2,NUDT4P1 chr12 93795703 - 3utr GPATCH1 chr19 33617552 + coding > 5 0 307 68 0.520 0.000 43 1 0.040 0.000 308 316 381 170 GTCAGGATTCTTACATCAATTATCTCAAATGAGACCATGCAAAGCAATTCAGTGTATACAACAATCATTTTTCCCCTTCAGTTCTGCTGCTTTATACAACAGTGTGATTGACAGAAAATTGGATGGCATGTGCCTGGTCAGAAAATGTCATCTGTTTACAAAATAACATCATGCAGCACAGTTTCTACTTTGTCTGCAAGTCAATTCACAAAAACTACTTATTTTCTGTTTTTTATTTGGGAGGCACATGGAACTGAAAAATTTAGCTGCCCAATTTTATTCAACTACCCCACCAAAAAAAAAAAAAAAAATCACAAAGTAGTAGCTCCGAGAGTTCCGACAGCAGCGACAGCCAGAGTGACGAGGAAACCGCAGACGTGTCG CTX 1.30 LQ 0 NLoss ,,,, NM_001301022,NM_001301023,NM_001301024,NM_019094,NM_199040 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_018025,NM_018025,NM_018025,NM_018025,NM_018025 ,,,, ,,,, ,,,, 2678,2678,2678,2678,2678 2796,2796,2796,2796,2796 ,,,, ,,,, ,,,, ;;;; geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_018025 geneB_transcripts=NM_018025 ,,,, ,,,, MV4_11_RNAseq_1 SRGN chr10 70847891 - 5utr SUMO2 chr17 73179054 - 5utr ? 1 2 49 120 0.000 0.740 9 72 0.360 0.670 49 42 20209 102 CTGCATTTGAGTAGCTTCTGCATCATGACCAACTTAGTCTAGCTCTCCCCTCGTCCACCGCTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTTGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGC CTX 1.17 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 NBPF20,NBPF8_locA,NBPF9_locA,NBPF25P_locA,NBPF10,NBPF25P_locB,NBPF12 chr1 144524702 + intron NBPF11_locB,NBPF8_locB,NBPF14,NBPF9_locB,NBPF25P_locC chr1 148179920 + intron ? 3 0 293 83 0.670 0.910 260 1 1.000 0.000 294 294 14 183 CGCCGACCGGGGAGTTTCTGGGGTCTCTCCCTCTGGCTCCAGAATCTCCTAACGCGCAGGTGTCCAACGTGACCAGCGCGATTCACCGCTCTAATATCTCTGGTTTTCCAAGGACTTGCTCAGTCGTCCTGCCAGGCGGGCCCTGTAAGTCTGGGAACCCTAGAGCCAGTTTTTCCAAGATGGTACTTTATTGGTTCCATAAAGCCAACCATAGTCCCCTAAAGCCTTCAGGTCATATCTGAAAACATGATGTTTCAGTCAAAGCCTTGGTGATATAACCTGTGTTTCCAGTTTGTCCGCTCCAATCTCTCCGGTCTTCCAAGGCCTTGCTCAGTCGTCCTGCTGGGCGGGCCCTGAGGATGCAAGGGACGGAGGAAGTTTCG DEL 1.17 LQ 0 other unhandled orientation ? MV4_11_RNAseq_1 CSNK2A1 chr20 461768 - intergenic LARP1 chr5 154194460 + 3utr > 0 8 66 379 0.000 0.020 1 101 0.000 0.100 66 75 47 168 CTAAACCATAACTGTGCTGGGAAGAAGTTGTGCCATGAAGGTCTTTAATTTTTTTTAATAAAAACAAAAGACCAAAAAAAAAAAAAAAAATCAGAAAACCCCCACCTAATCCACAGAAAGTAATGTCTTTCCCCTCCCCTTGGAATTTTTGTTTTGTTTTTGGAAATAATATTTTTTTAAAAGTTGCCTTATTGTGGAGCGGGAATCTGAAATACCCAAATGCCTGTTTTCCTCGGTGGAGTCAACCCGAAGAGCTCCCACCTTCTCTGGATGTGCCTGGGCTTGGACTGGCTAGAATCTTTCTCTGGACTGTTGCATGTACAGTGCCTCCATCCTGGAGGCAAGAGAGTTGGGAGTGGCTCGAATCAGAGCCGTGCCCAAGATATACCTGCTGTTGCATCGTTTGAAGCTGACGTCCTGTGTCTGTACACTGCTGCCACTGTTGTGTCCTCGCG CTX 1.12 LQ 0 other 0,0,0 NM_177559,NM_001895,NM_177560 ,, ,, ,, ,, ,, ,, NM_015315,NM_015315,NM_015315 ,, ,, ,, ,, 3060,3060,3060 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_015315;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 NA chr16 54903377 - intergenic CHTF8 chr16 69152515 - 3utr > 0 4 71 126 0.960 0.550 1 206 0.000 0.010 78 79 6 422 CTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGAAGCCTGCTGTGCTTTCGTCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTTTTCCTCAGGGATACATTGGCCTGCAGGTCCCAGTTCACATGTAGTCCCC INS 1.12 LQ 0 other ,, ,, ,, ,, ,, ,, ,, ,, NM_001039690,NM_001040146,NM_138612 ,, ,, ,, ,, 366,366, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001039690,NM_001040146,NM_138612;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_138612 ,, ,, MV4_11_RNAseq_1 C11orf31 chr11 57510502 + 3utr NA chr2 44292824 - intergenic > 6 0 455 62 0.020 0.660 236 1 0.430 0.010 456 471 143 0 ATCGAGCATTGCACTAGCTGACGCGTCTATGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCAGAGCTTCCAGTAAAGGTGAACCCGACGAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGGCCCCCACGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAGAAGTACCTGTCGTAGGGAGATTTGGGTAGAAGCCCTCATGCTGAGCTTTGTGTCCCTGGTGATGTTGGAACATTAATGATGGAACATGGCCAAACTTCAGTCATGATCCTGAAGCCATGGTTTCTTCCCTGCCAGAAATGAAGGTTCAGTTATGAGGCAACCCTCTAGTAAGGCATTGTAAAAGTTACTGGATTTGGTTTAATAAAAGTTGAAATAAAGAAAAAAAAAAAAAAAAACAAAAAAACACAAAAAAATAGTAAAATATAAAAACAAATTAATGTTTTATAGACCCCGG CTX 1.10 LQ 0 other NM_170746 geneB_no_transcripts MV4_11_RNAseq_1 HSD17B8 chr6 33174227 + coding KIF13A chr6 17952855 - intron > 3 0 76 59 -0.090 0.940 155 1 0.020 0.340 145 183 188 0 GCAGAGTCCAGGGTCCTTGAGGCAGTTACATGAAAAGACCTCCAGTGACTTCCACTGAGGACCCTGAGGATGTGGCAGATGTGGTCGCATTCTTGGCATCTGAAGATAGTGGATACATCACAGGGACCTCAGTGGAAGTCACTGGAGGTCTTTTCATGTAACTGCCTCAAGGACCCTGGACTCTGTCACCCAGACTGGAGTGCAGTGAGTGGTGCGATCATAGCTTACTGCAGCCTGAAACTCCTG ITX 1.09 LQ 0 CLoss ,,,, NM_014234,NM_014234,NM_014234,NM_014234,NM_014234 ,,,, ,,,, ,,,, 769,769,769,769,769 ,,,, ,,,, NM_001105566,NM_001105567,NM_001105568,NM_001243423,NM_022113 ,,,, ,,,, ,,,, 146,146,146,147,146 5313,5274,5250,213,5418 ,,,, ,,,, ,,,, ;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001105566,NM_001105567,NM_001105568,NM_001243423,NM_022113 ,,,, ,,,, MV4_11_RNAseq_1 FAIM3 chr1 207081598 + intron NFIC chr19 3465146 + 3utr > 0 4 66 136 0.950 0.000 1 149 0.010 0.060 67 65 1 75 CAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTTTAAAAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAACCTTTAAAAAAATTCCATGTTTCCTAATTTGCACGAAATTTTCTACCACAAGATGTGCCTTGCCTTCCGAGAATAAGTATTACCTTTAAACAATAT CTX 1.08 LQ 0 other ,,,,,,,,,,,,,, NM_001142473,NM_001142473,NM_001142473,NM_001142473,NM_001142473,NM_001193338,NM_001193338,NM_001193338,NM_001193338,NM_001193338,NM_005449,NM_005449,NM_005449,NM_005449,NM_005449 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843,NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843,NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, 1527,1320,1293,1287,1500,1527,1320,1293,1287,1500,1527,1320,1293,1287,1500 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ;;;;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001245002,NM_001245004,NM_001245005,NM_005597,NM_205843;geneb_utr_codons=13 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, MV4_11_RNAseq_1 JAK1 chr1 65305457 + coding EEF1G,MIR3654,MIR6747 chr11 62334472 - coding ? 3 0 160 69 0.050 0.660 126 0 0.100 0.000 161 156 71 31719 GCAGATTCCTTTGTACTTCACAATGTTCTCATGATAGAGGTTCCTTAAGATCTCGATTTCCTTTTTCAGATCAGCTATGTGGTTACCTCCACTCTCAGGCTTCAGAGATTTAACAGCCACCTGCTCCCCTGTATTGTCCCCTTCGGGGTCATACCTGCAGAGACCCAACCTAAAAAGGACACACCACGGAAAGAGAAGGGTTCACGGGAAGAGAAGCAGAAGCC CTX 1.07 LQ 1 Fusion unhandled orientation ? MV4_11_RNAseq_1 UQCRQ chr5 132203377 + 3utr EMBP1 chr1 121245474 + intergenic > 4 0 400 62 0.010 0.740 98 1 0.360 0.010 401 406 908 0 ACCGGATCGGTGACTGTGGAGGGCGAGCTGAGCCCTGGCCGCCGCCACAATGGGCCGCGAGTTTGGGAATCTGACGCGGATGCGGCATGTGATCAGCTACAGCTTGTCACCGTTCGAGCAGCGCGCCTATCCGCACGTCTTCACTAAAGGAATCCCCAATGTTCTGCGCCGCATTCGGGAGTCTTTCTTTCGCGTGGTGCCGCAGTTTGTAGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCAAAAAAAAAAAATTAAACTAACCCGTAATGGACATGTAATTTGGAAGGGCTCATTAACCTCATTGAAACAC CTX 1.03 LQ 0 other NM_014402 geneB_no_transcripts MV4_11_RNAseq_1 TMEM170B chr6 11583754 + 3utr NA chr4 18856257 + intergenic > 4 0 117 62 0.130 0.530 205 1 1.000 0.010 118 123 8 0 CTTAAATGTCATTACACAGAATTTATTGGATTAAAAATTTGTAATATACAGTATTTTAATAAAGTTTCTGTATTCAATTTCATGCACTTATATATAAATAAACCTGTCTTTGAAAGCTAATAAAAAAAAAAAAAAACTACTCTTATGTCCACTTTACAAAAGAAAACAGCATTGTGATTACTCCCA CTX 1.01 LQ 0 other NM_001100829 geneB_no_transcripts MV4_11_RNAseq_1 AKAP6 chr14 32954017 - intron DTL chr1 212277924 + 3utr > 0 4 59 117 0.860 0.000 1 244 0.030 0.040 61 95 0 456 AAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCAGCCATTTTACCTCACCCCCAAAAACACAAAAAAAAAAAAAAAAAAAAAAATCCATGAAAAAAAAAAGATTGATAAAGTAGATGATTTTGTTTGTATCCCTACCCATCCCCTGGCAGCCCTACTGATTGAAATTGGGGTACATTTGGCTGTCAGAAATATTACC CTX 1.01 LQ 0 other ,, NM_004274,NM_004274,NM_004274 ,, ,, ,, ,, ,, ,, NM_001286229,NM_001286230,NM_016448 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_CDS_mapping_exception=NM_001286229:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_001286230:-2;geneB_CDS_mapping_exception=NM_016448:-2 geneB_transcripts=NM_001286229,NM_001286230,NM_016448;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 CROCC chr1 17279278 - intron PSRC1 chr1 109822633 - 3utr > 0 4 55 137 0.550 0.000 1 139 0.010 0.030 57 57 0 191 TGATTTTTAGCTTAGGGGAGGGTCCGACAGCTGTGGAAGAGGGATTGGGGTTGGGATGGAGTAGAGACCATGGGAAATGGGGTGGATTAGGATTGAGCTGGAGAAGACTTAAACTCTCTGGGTTGAAAGAAGATTAGGGGAAAAGAGGTCACCTTCCAGCAGTGAAATGAACAAATAGAAGATGAGAAGTACAG INS 1.00 LQ 0 other ,, NM_014675,NM_014675,NM_014675 ,, ,, ,, ,, ,, ,, NM_001005290,NM_001032291,NM_032636 ,, ,, ,, ,, 933,1002,1002 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001005290,NM_001032291,NM_032636;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 SLC36A4 chr11 92880850 - 3utr NA chr2 44292826 - intergenic > 4 0 92 56 0.000 0.750 118 1 0.260 0.010 93 90 42 0 ACATCAAGAAAACCTAATCTTCTGACTCCCAGGCCAGGATGTTTTATTTCTCACATCATGTCCAAGAAAAAGAATAAATTATGTTCAGCTTAAAAAAAAAAAAAAAACACAAAAAAATAGTAAAATATAAAAACAAATTAATGTTTTATAG CTX 1.00 LQ 0 other , NM_001286139,NM_152313 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NA chr2 107315196 + intergenic ITGB1BP1 chr2 9558811 - coding > 0 5 57 209 0.920 0.000 1 149 0.010 0.050 61 63 0 275 GGCTTTTAGGGGTAGTTTTCACGACACCTGTGTTCTGGCGGCAAACCCGTTGCGAAAAAAACGACACAGTAGTAGCAGTTCCCAAAGTAGCGAAATCAGTACTAAGAGCAAGTCTGTGGATTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCACCAAAAGCTCAGGACAAAGCAACAATAACTCAGATACCTGTGCAGAATTTCCAATAAAATACGTTGGCGCCCTTCACAAACTGAACCTCTCCG ITX 1.00 LQ 0 NLoss 0,0 , , , , , , , NM_004763,NM_022334 6,6 , tuple,tuple 16,16 603,453 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_004763,NM_022334 , , MV4_11_RNAseq_1 NA chr1 96912424 - intergenic ITGB1BP1 chr2 9558811 - coding > 0 5 57 209 0.920 0.000 1 149 0.010 0.050 59 63 0 275 GGCTTTTAGGGGTAGTTTTCACGACACCTGTGTTCTGGCGGCAAACCCGTTGCGAAAAAAACGACACAGTAGTAGCAGTTCCCAAAGTAGCGAAATCAGTACTAAGAGCAAGTCTGTGGATTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCACCAAAAGCTCAGGACAAAGCAACAATAACTCAGATACCTGTGCAGAATTTCCAATAAAATACGTTGGCGCCCTTCACAAACTGAACCTCTCCG CTX 1.00 LQ 0 NLoss 0,0 , , , , , , , NM_004763,NM_022334 6,6 , tuple,tuple 16,16 603,453 , , , ; geneA_no_transcript_IDs_found geneB_transcripts=NM_004763,NM_022334 , , MV4_11_RNAseq_1 POLR3E chr16 22321510 + intron NA chr1 243138577 - intergenic > 4 0 144 57 0.000 0.920 123 1 0.040 0.010 145 142 149 0 CTACCACGCAGATGAGCCTTGAGAACATTGTGCTAAGTGAAAGAAGCCACATGCTTCTTCACTCGCAGCTACGCGCTGTGTGATTACGTCTCAGTCAGCGACCGACCACATACTCAACGGTGGTCCCATAACATTATAATGGAGATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGN CTX 1.00 LQ 0 other ,,,, NM_001258033,NM_001258034,NM_001258035,NM_001258036,NM_018119 ,,,, ,,,, ,,,, 364,256,256,364,364 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 PLEKHF2 chr8 96135187 + intergenic NA chr8 55120413 + intergenic > 0 29 55 319 0.990 0.000 1 701 0.010 0.260 57 59 1 321 CAAGAAGTGCCTTTTGCCTCCCACCATAATTCTGAGGCCTCCCCAGCCATGTGGAACTATGGAGTCTCACTTTGTCACCAAGCTGGAGTGTGGTGGCATGATCTTGGCTCACTGCAACCTCCCAGGTTCAAGCTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTCGCCAGGGTGGTCTCTATTTCTTGACCTCGTGATTTGCCCACCTTGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGTCACTTTGCCCGGCCTAATTTTGATTTTTTAAAACATTTAATTAAAATGTTATTTAATTACTGAG INS 1.00 LQ 0 other 0 NM_024613 geneB_no_transcripts MV4_11_RNAseq_1 HSP90B1,MIR3652 chr12 104341163 + coding NA chr6 164331830 - intergenic > 33 0 135 45 0.000 0.000 788 1 0.050 0.010 140 136 7752 0 AGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAG CTX 1.00 LQ 0 CLoss NM_003299 2337 geneB_no_transcripts MV4_11_RNAseq_1 LINC01120 chr2 132143141 - intergenic DARS chr2 136664831 - 3utr > 0 6 48 91 0.840 0.000 1 142 0.010 0.100 49 61 0 988 ATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTCAAAAAAAAAAAAAAAAAAAAAGAAAGCCACACTTATTCTTTTCAGTAACCTGCTAGTGCACAGGCTGTACTTTAGGTACTTAAAATATGCACT INS 1.00 LQ 0 other , , , , , , , , NM_001293312,NM_001349 , , , , 1206,1506 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001293312,NM_001349;geneb_utr_codons=13 , , MV4_11_RNAseq_1 CHD1L chr1 146789374 - intergenic SERINC2 chr1 31897558 + coding > 0 4 50 106 0.970 0.000 1 193 0.010 0.100 55 55 0 53 CAAAATCTGATATCCTGTCTTCCACTTGGTCAATTTGGCTATTGATACCTGTGTAGGATCCCCACCGTCCTGCAGGGCCACATCGACTGTGGCTCCCTGCTTGGCTACCGCGCTGTCTACCGCATGTGCTTCGCCACGGCGGCCTTCTTCTTCTTTTTCAC ITX 1.00 LQ 0 NLoss 3,3,3,3,3 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 81,86,22,81,77 ,,,, blat,blat,blat,blat,blat 242,257,65,242,230 1380,1395,1203,1380,1368 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 ,,,, ,,,, MV4_11_RNAseq_1 NA chr2 131029974 + intergenic DARS chr2 136664831 - 3utr > 0 6 47 91 0.870 0.000 1 142 0.010 0.100 48 61 0 988 ATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTCAAAAAAAAAAAAAAAAAAAAAGAAAGCCACACTTATTCTTTTCAGTAACCTGCTAGTGCACAGGCTGTACTTTAGGTACTTAAAATATGCACT ITX 1.00 LQ 0 other , , , , , , , , NM_001293312,NM_001349 , , , , 1206,1506 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001293312,NM_001349;geneb_utr_codons=13 , , MV4_11_RNAseq_1 OLA1 chr2 174939740 - 3utr LOC100287072 chr17 20680213 + intergenic > 12 0 321 40 0.000 0.000 504 1 0.130 0.010 322 348 404 0 GTTGGGGAGATGGGAATCTTTGACAAACAAATTATTTTTATTTGTTTTAAAATTAAAATACTGTGTACCCCCCCCCCCCATGAAATGCAGGTTCACTAAATGTGAACAGCTTTGCTTTTCACGTGATTAAGACCCTACTCCAAATTGTAGAAGCTTTTCAGGAACCATATTACTCTCATGATACTTCATTAATCTCCATCATGTATGCCAAGCCTGACACATTTGACAGTGAGGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTTTTACAGTACTCCAGATGTCTACACTCAATAAAACATTTGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTTTTACAGTACTCCAGATGTCTACACTCA CTX 1.00 LQ 0 other , NM_001011708,NM_013341 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ELANE chr19 856243 + 3utr NA chr11 49423506 - intergenic > 3 0 150 45 0.000 0.490 66 1 0.230 0.010 151 137 107 0 TCATCCAACGCTCCGAGGACAACCCCTGTCCCCACCCCCGGGACCCGGACCCGGCCAGCAGGACCCACTGAGAAGGGCTGCCCGGGTCACCTCAGCTGCCCACACCCACACTCTCCAGCATCTGGCACAATAAACATTCTCTGTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG CTX 1.00 LQ 0 other NM_001972 geneB_no_transcripts MV4_11_RNAseq_1 BRAT1 chr7 2582909 - coding UNC45B chr17 33478261 - intron > 3 0 116 43 0.000 0.680 106 1 0.170 0.010 117 106 128 0 GTCTGCTGGAGAGAGACCCCATCCCCGCCGCACACTCGTTCGTGGACCTGCTTCTCTGTGTGGCTCGTTCTCCCGTGTTCAGTTCTTCCGACGGCAGCCTGTGGGAGACAGTGGCGACCCGCTGAATTTAAGCACATTAGTCAGCGGAGGAG CTX 1.00 LQ 0 CLoss ,, NM_152743,NM_152743,NM_152743 ,, ,, ,, 852,852,852 ,, ,, NM_001033576,NM_001267052,NM_173167 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001033576,NM_001267052,NM_173167;geneB_transcript_strand_disagree=NM_001033576;geneB_transcript_strand_disagree=NM_001267052;geneB_transcript_strand_disagree=NM_173167 ,, ,, MV4_11_RNAseq_1 CYP4Z2P chr1 47357871 - intron EPHA1-AS1 chr7 143112156 + 5utr > 0 9 46 170 0.900 0.000 1 58 0.140 0.600 47 60 1 99 GCCTCATTGTCTACCATGAAGGCACAATCAGAGTGCTCCAGGGTGGTGAGTAGCTGGGATTACAGGTTTATTTGCAAGATGGGTTTGAGGGAATTAAGGATAAAGTCTGCTGAAAGTAGCACCAGCCTCTGGATTAAAAGGGATGTTTGGATGAAGCTTCAATCTCAAGAAGAGGCAAGAGAAAACTAAAGAAAAAGAGACAAGAAGGTAGTTGACAAGCTGTGAACCTG CTX 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 SPATA6 chr1 48749910 + intergenic SERINC2 chr1 31897558 + coding > 0 4 46 106 0.980 0.000 1 193 0.010 0.100 55 55 0 53 CAAAATCTGATATCCTGTCTTCCACTTGGTCAATTTGGCTATTGATACCTGTGTAGGATCCCCACCGTCCTGCAGGGCCACATCGACTGTGGCTCCCTGCTTGGCTACCGCGCTGTCTACCGCATGTGCTTCGCCACGGCGGCCTTCTTCTTCTTTTTCAC INS 1.00 LQ 0 NLoss 3,3,3,3,3 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 81,86,22,81,77 ,,,, blat,blat,blat,blat,blat 242,257,65,242,230 1380,1395,1203,1380,1368 ,,,, ,,,, ,,,, ;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001199037,NM_001199038,NM_001199039,NM_018565,NM_178865 ,,,, ,,,, MV4_11_RNAseq_1 HSP90B1,MIR3652 chr12 104341205 + coding TGFBR3 chr1 92109564 + intergenic > 24 0 393 35 0.000 0.000 554 1 0.070 0.010 394 419 8537 0 AAAGCACAAGCGTACCAAACGGGCAAGGACATCTCTACAAATTACTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGACACCCGCTGATCAGAGACATGCTTCGACGAATTAAGGAAGATGAAGATGATAAAACAGTTTTGGATCTTGCTGTGGTTTTGTTTGAAACAGCAACGCTTCGGTCAGGGTATCTTTTACCAGACACTAAAGCATATGGAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAACAGCAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAAC CTX 1.00 LQ 0 CLoss 0,0,0 NM_003299,NM_003299,NM_003299 ,, ,, ,, 2379,2379,2379 ,, ,, NM_001195684,NM_001195683,NM_003243 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 GEMIN6 chr2 38993069 - intergenic COX5B chr2 98262554 + coding > 0 3 45 142 0.970 0.000 1 119 0.010 0.470 73 103 0 4003 ATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTTCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCATGAGGGCTCGCGGCCCCCGTGGCGCGGCCGCGATGCGGTCCATGGCATGTGGAGGCGGTGTTCCCAACGATGAAGAGCAGGAGACTGGGTTGGAGAGGGAGATCA ITX 1.00 LQ 0 NLoss 0 NM_024775 NM_001862 5 390 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001862 geneB_transcripts=NM_001862 MV4_11_RNAseq_1 LYZ chr12 69747295 + 3utr SLC2A14 chr12 7994573 + intron > 25 0 80 45 0.000 0.990 312 1 0.080 0.010 80 82 21481 3 AATACTGGTGAAAATTTACCTAAAACCTTGGTTATCAAATACATCTCCAGTACATTCCGTTCTTTTTTTTTTTGAGACAGCCTGGGCAACAAGAGCGAAACTGTCTCAAAAGAAAAACAAAACAAAACAAAACAAGTTCAGTAAAGTGAAG INS 1.00 LQ 1 other ,,,,, NM_000239,NM_000239,NM_000239,NM_000239,NM_000239,NM_000239 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001286233,NM_001286234,NM_001286235,NM_001286236,NM_001286237,NM_153449 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001286233,NM_001286234,NM_001286235,NM_001286236,NM_001286237,NM_153449;geneB_transcript_strand_disagree=NM_001286233;geneB_transcript_strand_disagree=NM_001286234;geneB_transcript_strand_disagree=NM_001286235;geneB_transcript_strand_disagree=NM_001286236;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001286237;geneB_transcript_strand_disagree=NM_153449 ,,,,, ,,,,, MV4_11_RNAseq_1 CCAR1 chr10 70551081 + 5utr OLFML2B chr1 161995617 - intergenic > 5 0 92 35 0.000 0.000 337 1 0.080 0.010 93 87 691 0 TCAAAAATCCAAGGAGAATGGTGCCAGTGTATGATAAAATCCATGTAGTGATGAGGAATGGTGTTAAATAATGTAATATATAAAAATCATGAAATCCACACTGTTCTCAAGAAGGATAATGTAAAGAATGAAGACAAAGATCAAAAATCCAAGGAGAATGGTGCC CTX 1.00 LQ 0 other 0,0,0,0,0,0 NM_001282959,NM_001282959,NM_001282960,NM_001282960,NM_018237,NM_018237 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001297713,NM_015441,NM_001297713,NM_015441,NM_001297713,NM_015441 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 GFI1 chr1 92949721 - intron MIR1244-3_locB,MIR1244-1_locB,MIR1244-2_locB chr12 12263917 + intergenic > 3 0 118 41 0.000 0.900 134 1 0.130 0.010 119 127 188 0 CCCAGATGCGAGTTTCTCCTGGGGCGGGGGTTGGTCGTCTGTTGTTCCCCTCACTTTCCTGTCCCTTTGCTCTCCCACCTCCTTTCTCTGGCCTCTGCTGTCCCCAATCCCTCTGCTGTCCCCAATCCCACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTCAT CTX 1.00 LQ 0 other , NM_001127216,NM_005263 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 CCDC88A chr2 55561560 - coding NA chr3 104808722 + intergenic > 7 0 302 32 0.000 0.000 242 1 0.070 0.010 303 313 172 0 AGAGAATTCCCAACTTGATGAGGAAAACTTAGAACTGCGAAGGAATGTAGAATCTTTGAAGTGTGCAAGCATGAAAATGGCTCAGCTACAGCTAGAAAACAAAGAACTGGAAAGTGAAAAAGAGCAACTTAAGAAGGGTTTGGAGCTCCTGAAAGCATCTTTCAAGAAAACAGAACGCTTAGAAGTTAGCTACCAGGGTTTAGATATAGAAAATCAAAGACTGCAAAAAACTTTAGAGAACAGCAATAAAAAAATCCAGCAATTAGAGAGTGAACTACAAGACTTAGAGATGGAAAATCAAAGACTGCAAAAAAACTTTAGAGAACAGCAATAAAAAAATCCAGCAG CTX 1.00 LQ 1 CLoss ,, NM_001135597,NM_001254943,NM_018084 ,, ,, ,, 2397,2397,2397 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 PDCD5 chr19 33036584 + intergenic PLIN3 chr19 4838609 - 3utr > 0 3 42 128 0.990 0.000 1 143 0.010 0.060 67 108 0 1156 GATTGCTTAGGCCTGGGTGATTGAGGATGCAATGAGCTGTGATTGTGCCACCACACTCCAGCCTGGGCAATACAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAATCAAGGATATAGTTCATATACCACTTATTTGTTTAAACCGATGTCCCTGAATATCAACCTGTAGCTAATGGACTTGGGTTTTCTGTTCTAAGTGGGCCTCCTTGGGATGGG ITX 1.00 LQ 0 other 0,0,0 NM_004708,NM_004708,NM_004708 ,, ,, ,, ,, ,, ,, NM_001164189,NM_001164194,NM_005817 ,, ,, ,, ,, 1302,1269,1305 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_001164189,NM_001164194,NM_005817;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 IL1RAP chr3 190367863 + 3utr HMCN1 chr1 185705382 + intron > 3 0 373 34 0.000 0.480 140 1 0.320 0.090 374 361 174 0 CTTAGTGGCCTTGAGAGTTGCTTTTGGCATTAATATTCTAAGAGAATTAACTGTATTTCCTGTCACCTATTCACTAGTGCAGGAAATATACTTGCTCCAAATAAGTCAGTATGAGAAGTCACTGTCAATGAAAGTTGTTTTGTTTGTTTTCAGTAATATTTTGCTGTTTTTAAGACTTGGAAAACTAAGTGCAGAGTTTACAGAGTGGTAAATATCTATGTTACATGTAGATTATACATATATATACACACGTGTATATGAGATATATATCTTATATCTCCACAAACACAAATTATATATATACATATCCACACACATACATTACATATATCTGTGTATATAAATCCACATGCACATGAAATATATATACATATCCACACACATACATTACATATATCTGTGTATATAAATCCACATGCACATTACATATCCAC CTX 1.00 LQ 0 other ,,, NM_001167928,NM_001167929,NM_001167931,NM_002182 ,,, ,,, ,,, ,,1345, ,,, ,,, NM_031935,NM_031935,NM_031935,NM_031935 ,,, ,,, ,,, 268,268,268,268 16908,16908,16908,16908 ,,, ,,, ,,, ;;; geneB_no_inframe_contig_found geneB_transcripts=NM_031935 ,,, ,,, MV4_11_RNAseq_1 LRRC75A-AS1,SNORD49B chr17 16345315 + 5utr NA chr4 176360441 + intergenic > 5 0 189 35 0.000 0.820 171 1 0.270 0.010 203 212 3575 0 CTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCGTGACATCATGTACAACAAGGGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAGACGTTTTTTCAGACAGTCACCATGAACTAACACTACAATCTAGCATGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAG CTX 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 PPIG chr2 170493170 + coding NA chr8 78842800 + intergenic > 3 0 91 31 0.000 0.000 184 1 0.040 0.010 92 90 686 0 ATCAGAAGAAATTCAGAAAAAGATGACAAGTATAAAAACAAAGTGAAGAAAAGGGCCAAATCTAAAAGTAGGAGTAAGAGCAAAGAGAAATTCAGAAAAAGATGACAAGTATAAAAACAAAGTGAAGAAAAGGGCCAAATCTAAAAGTAGGAGTAAG CTX 1.00 LQ 0 CLoss NM_004792 1402 geneB_no_transcripts MV4_11_RNAseq_1 TXNDC5,BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5,EEF1E1 chr6 7881750 - 3utr TMEM255B chr13 114514910 + intergenic > 3 0 202 32 0.000 0.000 82 1 1.000 0.010 203 191 3 0 GGAAATCTTTATTAATCACGTATGGTTCACAGATAATTCTTTTTTTAAAAAAACCCAACCTCCTAGAGAAGCACAACTGTCAAGAGTCTTGTACACACAACTTCAGCTTTGCATCACGAGTCTTGTATTCCAAGAAAATCAAAGTGGTACAATTTGTTTTTTTACACTATGATACTTTCTAAATAAACTCTTTTTTTTTAAAAAAACCCAACCTCCTAGAGAAGCACAACTGTCAAGAGTCTTG CTX 1.00 LQ 0 other 0,0,0 NM_001145549,NM_001718,NM_030810 ,, ,, ,, ,, ,, ,, NM_182614,NM_182614,NM_182614 ,, ,, ,, ,, 981,981,981 ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 ESD chr13 47345391 - 3utr NA chr1 239246872 - intergenic > 18 0 303 31 0.000 0.560 231 1 1.000 0.010 304 295 53 0 CTGATAACTTCATAGCTGCCTGTACAGAAAAGAAAATCCCCGTTGTTTTTCGATTGCAAGAGGGTTATGATCATAGCTACTACTTCATTGCAACCTTTATTACTGACCACATCAGACATCATGCTAAATACCTGAATGCATGAAAAAACTCCAAATAAGAGAATCTCTTCAGGATTATAAAAGTTGTAAAATGCAACTGTATTGCTGAGCAAAAAAAAAAAAAAATTCAAAACATTGGATTTTATAGTGCTAAAAGGGCTTTATTCTATAGTTGAATCACCTCTGAATAAAGATATAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTGGATTTTATAGTGCTAAAAGGGCTTTATTC CTX 1.00 LQ 0 other NM_001984 geneB_no_transcripts MV4_11_RNAseq_1 SS18L2 chr3 42636284 + 3utr NA chr3 82368534 - intergenic > 4 0 259 39 0.000 0.980 37 1 0.010 0.010 260 277 637 0 CTTCCATTTGGCTGTCGTGAGGAGTAATTGAATGTAATCCATCTCTTACAAAATGGAGACAGGGTCTTTACCAACTCAACTGGTTAAAACATGAATGAAACCTCTGTGGCTCTTTCGAAACGTGAAAATGTGAAGAAAGCTACTAACTTAGCTGTATTCTCATGTAAATATTTTTTAAATAATTAAGCAAATCCCTCAATAAGTTGAGCCCAGGTGTCCTCTTTCCTGAACTTGGAGCATGTTTGGATAACAAAAACATCCCAGTGATGTCTTGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAGGTGAACTCG ITX 1.00 LQ 0 other , NM_001201572,NM_016305 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 KCTD3 chr1 215717202 + intergenic PPP4R2 chr3 73118216 + intergenic > 0 3 29 92 0.520 0.000 1 181 0.010 0.040 65 64 0 255 TTCAACTTGGAGCCTAGATTACTTTGCCAAATGTATTATTTTCATAATGCAATAAAATATAAATTAGAATACATCTTACTATTTCACATTTTAAAAATCAGTACACTCTTCAGGATTTTCTTTTATTTCAACTTGGAGCCTAGATTACTTTGCCAA CTX 1.00 LQ 0 other 0 NM_016121 NM_174907 geneB_no_transcripts MV4_11_RNAseq_1 CRIP1 chr14 105955118 + 3utr RNU6-2_locF chr14 32690544 - intergenic > 3 0 404 30 0.000 0.710 171 1 0.180 0.010 405 407 122 0 GCCCGTGCCGCCCCAGCCGCTGCCGCCTGCACCGGACCCGGAGCCGCCATGCCCAAGTGTCCCAAGTGCAAAAAGGAGGTGTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTGGCATCGGCCCTGCCTGAAGTGCGAGAAATGTGGGAAGACGCTGACCTCTGGGGGCCACGCTGAGCACGAAGGCAAACCCTACTGCAACCACCCCTGCTACGCAGCCATGTTTGGGCCTAAAGGCTTTGGGCGGGGCGGAGCCGAGAGCCACACTTTCAAGTAAACCAGGTGGTGGAGACCCCATCCTTGGCTGCTTGCAGGGCCACTGTCCAGGCAAATGCCAGGCCTTGTCCCCAGATGCCCAGGGCTCCCTTGTTGCCCCTAATGCTCTCAGTAAACCTGAACACCAAAAAAAAAAAAAAAAAAAAAAATGAAAGTAAGTAAACATATCTATATGGCACAGTGGGGTAAATTTGAGGGATTTTAG ITX 1.00 LQ 0 other NM_001311 geneB_no_transcripts MV4_11_RNAseq_1 FRMD3 chr9 86067397 - intron HIATL1 chr9 97222440 + 3utr > 0 3 32 115 0.750 0.000 1 72 0.010 0.030 36 36 0 540 CTGTCTCAAAAAAAAAAAAAAGTTGTCAAAAAAAAAAAAAAAACAACTCAAGCATTCTGGTGGCAACATAGAGATTGTAGGCTGCTTCTAAGAAAGTTATTAACAATTTGGAAATTCCTAAGTAGGATGAGAGTTAGTAACTGGATACGAG ITX 1.00 LQ 0 other ,, NM_001244959,NM_001244960,NM_174938 ,, ,, ,, 148,15,148 ,, ,, NM_032558,NM_032558,NM_032558 ,, ,, ,, ,, 1521,1521,1521 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_032558;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 CBX4 chr17 77806957 - 3utr ZBTB20,MIR568 chr3 114826265 + intron > 4 0 276 27 0.000 0.000 174 1 1.000 0.010 277 282 20 0 TTTGACCTTTCTTCCCCTCCATCCAGTATTTCGGTTGATTTCATTTTCTCCCCTCTCTTCCCCTTCCACGAACTGCAATACCAGTAACCTTGGTATATATTTTTTGATACTGTACACATGGATGTCTTGTTTCTATGTGCAAAAAAAAAAAAAAAAAAAGTTTGTTAAAAGGCTACACGAGCTCTCTAGAAACTGCTGCTACTAGAAATGTCTAAACTATAAGCTTCCAACTATTACCTGCTTGAATGTAAATATTAAATGGAGATGTTGAAGGTGAGAAAAAAAAAAAAAAAAAAAGTTTGTTAAAAGGCTACACGAGCTCTCTAGAA CTX 1.00 LQ 0 other NM_003655 NM_015642 geneB_no_inframe_contig_found geneB_transcripts=NM_015642;geneB_transcript_strand_disagree=NM_015642;geneb_utr_codons=13 MV4_11_RNAseq_1 NA chr1 60616213 - intergenic RBM25 chr14 73572697 + coding > 0 4 37 346 0.980 0.000 1 56 0.010 0.010 38 29 0 555 GCGACAGAATGAGACTCTGTCTCAAAAAAAAAAAAAAAACGGGACCGAGAAGAAGATGAAGAAGATGCATACGAACGAAGAAAACTTGAAAGAAAACTCCGAGAGAAAGAAGCTGCTTATCAAGAGCGCCTTAAGAATTGGGAAATCAGAGAACGAAAGAAAACCCGGGAATATGAGAAAGAAGCTGAAAGAGAAGAAGAAAGAAGAAGAGAAATGGCCAAAGAAGCTAAACGACTAAAAGAATTCTTAGAAGACTATGATGATGATAGAGATGACCCCAAATATTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATGGAAGCCGATGAACGAGATAGGAAGAGAGAGAAGGAGGAG CTX 1.00 LQ 0 NLoss 3 NM_021239 429 tuple 1285 2532 geneA_no_transcript_IDs_found geneB_transcripts=NM_021239 MV4_11_RNAseq_1 NA chr8 16215895 - intergenic HEATR6 chr17 58142238 - intron > 0 4 29 131 0.770 0.000 1 174 0.010 0.080 72 70 0 48 GGATAAGACCACTTTGCAATAGGTGAAATTTCTCATGGCACTTTAAGTGAAATGTAAACATTTAAAAATATATGAGGTCATAGCTGATGAAAATGAATTGGAATAATTTTCATGATGTTTATATCTTCATATATTTTTAAATGTTTACATTTCACTTAAAGTGCCATGAGAAATTTCACCTATTGCAAAGTGGTCTTATCC CTX 1.00 LQ 0 other NM_022070 1416 3546 geneB_no_inframe_contig_found geneB_transcripts=NM_022070 MV4_11_RNAseq_1 SREK1IP1 chr5 64020312 - coding PEX5L chr3 179534751 - intron > 7 0 140 29 0.000 0.670 112 1 0.020 0.010 141 133 759 0 GAAGAAAGAAAAAAGCAAAGAAAAAATCAAATTGAAAAAAAAAAGGAAAAGGTCTTACTCATCCAGTTCCACTGAAGAGGACACTTCAAAACAAAAGAAACAAAAATATCAGAAGAAAGAAAAGAAAAAAGAAAACAAAAGAAACAAAAATATCAGAAGAAAGAAAAGAAAAAAG CTX 1.00 LQ 0 CLoss ,,,,,,, NM_173829,NM_173829,NM_173829,NM_173829,NM_173829,NM_173829,NM_173829,NM_173829 ,,,,,,, ,,,,,,, ,,,,,,, 367,367,367,367,367,367,367,367 ,,,,,,, ,,,,,,, NM_001256750,NM_001256751,NM_001256752,NM_001256753,NM_001256754,NM_001256755,NM_001256756,NM_016559 ,,,,,,, ,,,,,,, ,,,,,,, 934,868,835,763,811,616,364,940 1875,1809,1776,1704,1752,1557,1305,1881 ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001256750,NM_001256751,NM_001256752,NM_001256753,NM_001256754,NM_001256755,NM_001256756,NM_016559 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 MAST2 chr1 46255912 + intergenic JPX chrX 73218601 + intron > 0 4 37 162 0.990 0.000 1 66 0.010 0.020 38 33 1 116 TCCTGCCTCAGCCCCCCGAGTAGCTGAGATTACAGGTACTGGCTCCTGTATCACCCAGCTCTGGAGTTGAAAGAGCTCTTCATTCCTGAGTCTCCTGTACCACTGAGAATAGAAATACAAAAAAAATTCTAAAACTTGTATGGAACTACAAAAGACATTAAATAATCAAAGTAATCTTGAGCAACAAGGACACAG CTX 1.00 LQ 1 other 0 NM_015112 geneB_no_transcripts MV4_11_RNAseq_1 CHMP3,RNF103-CHMP3,RNF103 chr2 86730971 - 3utr NA chr2 189552157 + intergenic > 4 0 141 32 0.000 0.940 134 1 0.100 0.010 148 151 323 0 CACTGTTACTACGCCTAGTCCCCAATGTTTACTTTTCTGGTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCCCAGTATGTTATTCCTTTGTGTCCATGTTATTTCACTCCCACTTGTGAGAACATGGAATATTTGGTTTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCC ITX 1.00 LQ 0 other ,,, NM_001005753,NM_001193517,NM_001198954,NM_016079 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 NRP2 chr2 206566104 - intron PPP1CB chr2 29024299 + 3utr > 0 3 34 265 0.970 0.000 1 84 0.040 0.050 43 43 0 616 TGGGACTACAGGCTTACACCACCAAGCTTGGCTAATTTTTTTTTTTTTTTTTTTTTAAAGACTAAATGTGAAAAAATAATCACTACTTAAGCTAATTAATATTGGTCATTAAATTTAAAGGATGGAAATTTATCATGTTTAAAAATTATTCAAGCACTCTTAAAACCACTTAAACAGCCTCCAGTCATAAAAATGTGTTCTTTACAAATATTTGCTTGGCAACACGACTTGAAATAAATAAAACTTTGTTTCTTAGGAGAAAATGATTCTGTAATTCCAGTGTCACTAATTTATATTGTTCTTTCCCC ITX 1.00 LQ 2 other ,,,,,,,,,,, NM_003872,NM_003872,NM_018534,NM_018534,NM_201264,NM_201264,NM_201266,NM_201266,NM_201267,NM_201267,NM_201279,NM_201279 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876,NM_002709,NM_206876 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, 984,984,984,984,984,984,984,984,984,984,984,984 ,,,,,,,,,,, ,,,,,,,,,,, ,,,,,,,,,,, ;;;;;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_002709,NM_206876;geneb_utr_codons=13 ,,,,,,,,,,, ,,,,,,,,,,, MV4_11_RNAseq_1 UBE2G2 chr21 46188962 - 3utr NA chr1 242877156 + intergenic > 4 0 138 26 0.000 0.000 123 1 0.670 0.010 139 139 18 0 AGGGAGGAGAGGCAGTCTCTTGACAAAATAAAGTATTTTTATTCATTTGTATTTATTAAATGAAAAAACAATCCCATGGTGTCCCTGTTGTGTGGTGGAACCTAATGACTGTTGAAATAAAGTTCTGTGTTTTCCCTGAAAAAAAAAAAAAAAAACAATCCCATGGCGTN CTX 1.00 LQ 0 other ,, NM_001202489,NM_003343,NM_182688 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 CLPSL1 chr6 35748377 - intergenic LYRM2 chr6 90346792 - 3utr > 0 4 35 127 0.990 0.000 1 134 0.010 0.020 44 44 0 363 CGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAG INS 1.00 LQ 0 other 0 NM_001010886 NM_020466 267 geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 MV4_11_RNAseq_1 TCP11 chr6 35143371 + intergenic LYRM2 chr6 90346792 - 3utr > 0 4 35 127 0.990 0.000 1 134 0.010 0.020 44 44 0 363 CGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAG ITX 1.00 LQ 0 other 0,0,0,0,0,0,0 NM_001261820,NM_001261821,NM_001261819,NM_018679,NM_001093728,NM_001261817,NM_001261818 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, NM_020466,NM_020466,NM_020466,NM_020466,NM_020466,NM_020466,NM_020466 ,,,,,, ,,,,,, ,,,,,, ,,,,,, 267,267,267,267,267,267,267 ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_020466;geneb_utr_codons=13 ,,,,,, ,,,,,, MV4_11_RNAseq_1 IL1RAPL2 chrX 103874972 + intron JPX chrX 73218601 + intron > 0 4 35 162 0.990 0.000 1 66 0.010 0.540 36 33 0 103 TCCTGCCTCAGCCCCCCGAGTAGCTGAGATTACAGGTACTGGCTCCTGTATCACCCAGCTCTGGAGTTGAAAGAGCTCTTCATTCCTGAGTCTCCTGTACCACTGAGAATAGAAATACAAAAAAAATTCTAAAACTTGTATGGAACTACAAAAGACATTAAATAATCAAAGTAATCTTGAGCAACAAGGACACAG INS 1.00 LQ 0 other NM_017416 geneB_no_transcripts MV4_11_RNAseq_1 CNN2 chr19 1038601 + 3utr FAM83E chr19 49115708 - intron > 4 0 133 32 0.000 0.980 144 1 0.030 0.010 134 134 333 12 CTGCCCCGGGGCCAGGTGGAGAAAGTGAGGGCCGTACAAGGAAGTGAAATTCTGAGTTGTTGGGGCTAAGCCTGACCCCCTCTCCATGCTCCCCGCCCCAACCCACTCTGGCCTCAGTAGATTTTTTTTTCAGCCTGGGCAACATAGCGAGACTCCATCTCAATAAAATTAATAATAATAAAACCTTCCAAAAAAAGTGCCGGGACCAAATGGATTCACT ITX 1.00 LQ 0 other , NM_004368,NM_201277 , , , , , , NM_017708,NM_017708 , , , 465,465 1437,1437 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_017708 , , MV4_11_RNAseq_1 NA chr8 55104143 - intergenic ZFHX4-AS1 chr8 77505936 - intergenic > 4 0 122 33 0.000 0.990 128 1 0.070 0.010 123 123 232 0 GCAGCCTTGTTTCCATGAGATCAAACAGTTTTTGGAGTGTGCCCAGAACCAGGGTGACACCAACAAGCTCTGTGGGGCTTTCAATGAGGTTCTCAAACAGTGCAGACTTGCAAACAGATAGGCAGTTCCACATGGCTGGGGAGGCCTCAGAATTAT INS 1.00 LQ 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr2 199289561 - intergenic DCUN1D4 chr4 52757926 + coding > 0 3 28 206 0.750 0.000 1 54 0.010 0.180 29 24 0 71 TCAGCCTCCTGAGTAGCTGGGACTACAGGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATGCACAAAACATGGGTTATTTTACTCTACAGGAGTGGTTAAAAGGAATGACTTCTCTCCAATGTGATACAACAGAAAAACTCAGAAATACTTTGGATTACTTAAGATCATTCTTAAATGATTCTACAAACTTTAAACTTATTTACAGATATGCGTTTGACTTTGCACGGG CTX 1.00 LQ 0 NLoss 3,3,3,3 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001040402,NM_001287755,NM_001287757,NM_015115 139,183,79,139 ,,, tuple,tuple,tuple,tuple 415,547,235,415 879,1011,699,774 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001040402,NM_001287755,NM_001287757,NM_015115 ,,, ,,, MV4_11_RNAseq_1 SRSF11 chr1 70716358 + coding SCN3A chr2 165939022 - intergenic > 6 0 469 25 0.000 0.550 122 1 0.190 0.010 470 463 1903 0 GACGATCCAAAAGCCCAAGGCGGAGAAGATCTCATTCCAGAGAAAGAGGTAGAAGGTCAAGGAGCACATCAAAAACAAGAGACAAAAAGAAAGAAGACAAAGAAAAGAAACGTTCTAAAACACCACCAAAAAGTTACAGCACAGCCAGACGTTCTAGAAGTGCAAGCAGAGAGAGACGACGACGAAGAAGCAGGAGTGGCACAAGATCTCCTAAAAAGCCTCGGTCTCCTAAAAGAAAATTGTCCCGCTCACCATCCCCTAGGAGACATAAAAAGGAGAAGAAGAAAGATAAAGACAAAGAAAGAAGTAGGGATGAAAGAGAACGATCAACAAGCAAGAAGAAGAAGAGTAAAGATAAGGAAAAGGACCGGGAAAGAAAATCAGAGAGTGATAAAGATGTAAAACAGGTTACACGGGATTATGATGAAGAGGAACAGGGGTATGACAGTGAGAAAGGGAAATAAGAGAGAAAAGAAAGACAAAGAAAGAAGTAGGGATGAAAGAGAACGATCAACAAGC CTX 1.00 LQ 1 CLoss 0,0,0,0,0,0 NM_001190987,NM_001190987,NM_001190987,NM_004768,NM_004768,NM_004768 ,,,,, ,,,,, ,,,,, 1322,1322,1322,1325,1325,1325 ,,,,, ,,,,, NM_001081677,NM_001081676,NM_006922,NM_001081677,NM_001081676,NM_006922 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 DYNC1I2 chr2 172546770 + coding LOC442028 chr2 95578503 + intron > 5 0 218 30 0.000 0.930 64 1 0.060 0.010 219 240 604 0 CCGCGGAGCTGGTGGTGGCTACAGTTGGTGTTGGGGGCTTAGGCGAGGGACGTTACCGGGAAGTTGCAGGCGGGAGGACTCTTCCCCATCCAGTCACCTGACAGGTCACAAACATGTCAGACAAAAGTGAATTAAAGGCTGAGTTGGAACGTAAGAAGCAGCGACTGGCCCAAATCAGAGAGGAAAAGAAGAGAAAAGAAGAAGAAAGGAAAAAAAAAAGAAACAGGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAG INS 1.00 LQ 0 CLoss ,,,,,, NM_001271785,NM_001271786,NM_001271787,NM_001271788,NM_001271789,NM_001271790,NM_001378 ,,,,,, ,,,,,, ,,,,,, 105,105,105,105,105,105,105 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneB_no_transcripts ,,,,,, ,,,,,, MV4_11_RNAseq_1 AKNA chr9 117100671 - intron PARD3B chr2 205884305 + intron > 3 0 122 33 0.000 0.990 86 1 0.170 0.130 123 120 41 0 GAGGATGCCAGCCCTGGGCTAGGCACTGGGTTTAACTGTTGGAGGAACTGTCAGACTGTTTTCCACAGTGGCTCCACCATTTACATTCCCACCAGCAGTGCTGAGGATTCCAGTTTCTCCACCATTTACATTCCCACCAGCAGTGCTGAGAG CTX 1.00 LQ 0 other ,, NM_030767,NM_030767,NM_030767 ,, ,, ,, 4068,4068,4068 ,, ,, NM_057177,NM_152526,NM_205863 ,, ,, ,, 395,395,395 3411,3432,3315 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_057177,NM_152526,NM_205863 ,, ,, MV4_11_RNAseq_1 RASA2 chr3 141334184 + intergenic NA chr3 76485461 + intergenic > 3 0 96 26 0.000 0.790 110 1 0.110 0.010 97 126 70 0 TTTTTATTTAAATTTTATTTTCTTATCAAGAGTATTATAAAAATTAACTTTTTTAACTGTCGCTTGGAAATAACTCAAATAAATTACAAGAAGCCTGAAAAAAAAAAAAAAAACAAACCCACATGATTTCAAGGAGTCTGGCATTCCTGAA INS 1.00 LQ 0 other 0 NM_006506 geneB_no_transcripts MV4_11_RNAseq_1 CAMTA1 chr1 6885270 + coding NA chr1 187808076 - intergenic > 3 0 110 66 0.000 0.960 106 1 0.000 0.010 143 156 699 0 TCTCTTTTCCTACACGACTCTCTTCCGATCTTGGAACAGCAATAGTAGTCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGTCTGCCGAAATGTTCAAGTTTACCAAAAGAGAGGCACCGCTGGAACACTAATGAGAGATCATGATGCATGCCCACTGCAACATATTTTCACAATTTCTCTAATAAATCTGCCCTTCTTTACCTACAACTATCTTGGTAAATGGC ITX 1.00 LQ 1 CLoss ,, NM_001195563,NM_001242701,NM_015215 ,, ,, ,, 234,234,234 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 CAMTA1 chr1 6885270 + coding RIMS3 chr1 41076536 - intergenic > 3 0 110 62 0.000 0.970 106 1 0.000 0.010 143 163 699 0 TCTCTTTTCCTACACGACTCTCTTCCGATCTTGGAACAGCAATAGTAGTCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGTCTGCCGAAATGTTCAAGTTTACCAAAAGAGAGGCACCGCTGGAACACTAATGAGAGATCATGATGCATGCCCACTGCAACATATTTTCACAATTTCTCTAATAAATCTGCCCTTCTTTACCTACAACTATCTTGGTAAATGGC ITX 1.00 LQ 1 CLoss 0,0,0 NM_001195563,NM_001242701,NM_015215 ,, ,, ,, 234,234,234 ,, ,, NM_014747,NM_014747,NM_014747 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr1 243138563 - intergenic COX5B chr2 98262554 + coding > 0 3 92 142 0.930 0.000 1 119 0.010 0.000 95 103 0 5875 ATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTTCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCATGAGGGCTCGCGGCCCCCGTGGCGCGGCCGCGATGCGGTCCATGGCATGTGGAGGCGGTGTTCCCAACGATGAAGAGCAGGAGACTGGGTTGGAGAGGGAGATCA CTX 1.00 LQ 0 NLoss NM_001862 5 390 geneB_blat_issues=too_many_mismatches;geneB_anchor_fail_but_found_blat_hit=NM_001862 geneB_transcripts=NM_001862 MV4_11_RNAseq_1 ACSL1 chr4 185681510 - coding NA chr4 43726596 + intergenic > 3 0 91 72 0.000 1.000 207 1 0.030 0.010 92 92 343 0 GGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTGCTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAAACAAACACTGCATGTTGT ITX 1.00 LQ 1 CLoss ,,,, NM_001286708,NM_001286710,NM_001286711,NM_001286712,NM_001995 ,,,, ,,,, ,,,, 1782,1782,1680,1269,1782 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 ACSL1 chr4 185681510 - coding UGT2A2,UGT2A1 chr4 70473991 + intron > 3 0 91 72 0.000 1.000 207 1 0.030 0.010 92 92 343 0 GGAGAATACATAGCCCCTGAAAAGATTGAAAATATCTACATGCGAAGTGAGCCTGTTGCTCAGGTGTTTGTCCACGGAGAAAGCCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAAACAAACACTGCATGTTGT ITX 1.00 LQ 1 CLoss ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001286708,NM_001286708,NM_001286708,NM_001286708,NM_001286708,NM_001286708,NM_001286710,NM_001286710,NM_001286710,NM_001286710,NM_001286710,NM_001286710,NM_001286711,NM_001286711,NM_001286711,NM_001286711,NM_001286711,NM_001286711,NM_001286712,NM_001286712,NM_001286712,NM_001286712,NM_001286712,NM_001286712,NM_001995,NM_001995,NM_001995,NM_001995,NM_001995,NM_001995 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1782,1782,1782,1782,1782,1782,1782,1782,1782,1782,1782,1782,1680,1680,1680,1680,1680,1680,1269,1269,1269,1269,1269,1269,1782,1782,1782,1782,1782,1782 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798,NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798,NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798,NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798,NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ;;;;;;;;;;;;;;;;;;;;;;;;;;;;; geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_001252274:-2;geneB_CDS_mapping_exception=NM_001252275:-2;geneB_CDS_mapping_exception=NM_001301239:-2;geneB_CDS_mapping_exception=NM_006798:-2 geneB_transcripts=NM_001105677,NM_001252274,NM_001252275,NM_001301233,NM_001301239,NM_006798;geneB_transcript_strand_disagree=NM_001105677;geneB_transcript_strand_disagree=NM_001252274;geneB_transcript_strand_disagree=NM_001252275;geneB_transcript_strand_disagree=NM_001301233;geneB_transcript_strand_disagree=NM_001301239;geneB_transcript_strand_disagree=NM_006798 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, MV4_11_RNAseq_1 LYRM2 chr6 90346550 - 3utr ARG1 chr6 131879046 - intergenic > 3 0 367 30 0.000 1.000 87 1 0.230 0.010 368 368 220 0 CAAAGCCCAGTCTTACTATTTATATGTACAGTATTTGGTGATAGAGAGCAAAGGAAAAACACATCAGAACAGTTGCCTTAACACTGAAAAACATACCCTGCATTTTGAAAATGTTTATGGATGTCTCAGCAGTTCTTAAAAGAAGAAAAAAACCACTAACAAATGGCCAGTAGATGCTGGACACAATCATTAGGGAAGTGTAAATCAAAACTACTATGAGGTCGGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAGGCTGTGGTAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGCTTGGTGTAGTGGCTCATGCTTGTAATCCCAGTACTTTAGGAG INS 1.00 LQ 0 other 0,0 NM_020466,NM_020466 , , , , , , NM_000045,NM_001244438 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 ADAMTS20 chr12 43864873 + intron C12orf56 chr12 64679840 - coding > 0 28 95 110 1.000 0.000 1 1468 0.010 0.750 96 94 0 151 GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCAGTGACCTTTTCTATTTCATAGTAAACAAACTTCATGAGTACTTGCCGGAGTCTAGGGATAAGAATGCACTACAAAATCAAAGCCAAAGGGTTGATGAGCTGGTGGCATGCATTGAAATTATACAGACCCTAGTATTGATGTTCAGAGAAACAGAAACCGAGTCATCACGCCTGAACACATTGGCAGCTAAGAATTACAGAAGCTTATTCTGGAGTATACAAATACTGCTACAGCACTTTTATATGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGGATTGGGATCCACA ITX 1.00 LQ 0 NLoss 0,0,0,0,3,0,3,0 NM_025003,NM_025003,NM_025003,NM_025003,,,, ,,,,,,, 7,7,7,7,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001099676,NM_001099676,NM_001170633,NM_001170633,NM_001099676,NM_001099676,NM_001170633,NM_001170633 212,212,372,372,212,212,372,372 5,5,7,7,,,, tuple,blat,tuple,blat,tuple,blat,tuple,blat 634,634,1114,1114,634,634,1114,1114 1389,1389,1869,1869,1389,1389,1869,1869 31,87,31,87,,,, ,,,,,,, RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,RSQDGRIGTAPVYSSQRERRRRRVISAFPSETSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKNYRSLFWSIQILLQHFYMRYFWSFSREISDWDP,EEPRWPNRNSSGLQLPA*ATQKTGDFCISI*DQ*PFLFHSKQTS*VLAGV*G*ECTTKSKPKG**AGGMH*NYTDPSIDVQRNRNRVITPEHIGS*ELQKLILEYTNTATALLYEILLVFQQGNLGLGST,,,, ADAMTS20:NM_025003[1,7]-C12orf56:NM_001099676[5,11];ADAMTS20:NM_025003[1,7]-C12orf56:NM_001099676[5,11];ADAMTS20:NM_025003[1,7]-C12orf56:NM_001170633[7,13];ADAMTS20:NM_025003[1,7]-C12orf56:NM_001170633[7,13];;;; ERROR_geneB_multiple_matching_frames=NM_001099676;ERROR_geneB_multiple_matching_frames=NM_001170633 geneB_transcripts=NM_001099676,NM_001170633 ,,,,,,, 2,1,2,1,,,, MV4_11_RNAseq_1 NA chr12 18008600 + intergenic C12orf56 chr12 64679840 - coding > 0 28 95 110 1.000 0.000 1 1468 0.010 0.750 96 94 0 151 GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCAGTGACCTTTTCTATTTCATAGTAAACAAACTTCATGAGTACTTGCCGGAGTCTAGGGATAAGAATGCACTACAAAATCAAAGCCAAAGGGTTGATGAGCTGGTGGCATGCATTGAAATTATACAGACCCTAGTATTGATGTTCAGAGAAACAGAAACCGAGTCATCACGCCTGAACACATTGGCAGCTAAGAATTACAGAAGCTTATTCTGGAGTATACAAATACTGCTACAGCACTTTTATATGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGGATTGGGATCCACA ITX 1.00 LQ 0 NLoss 3,0,3,0 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_001099676,NM_001099676,NM_001170633,NM_001170633 212,212,372,372 ,,, tuple,blat,tuple,blat 634,634,1114,1114 1389,1389,1869,1869 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found;ERROR_geneB_multiple_matching_frames=NM_001099676;ERROR_geneB_multiple_matching_frames=NM_001170633 geneB_transcripts=NM_001099676,NM_001170633 ,,, ,,, MV4_11_RNAseq_1 UBL5 chr19 9940782 + 3utr FMO1 chr1 171239718 - intron > 3 0 101 50 0.000 0.950 100 1 0.000 0.010 102 99 459 3 TAGATGAGAATCCTCATCTTCCTGCCCCGCTTTCCTCTCCCATCCTCATCCCCCACACTGGGATAGATGCTTGTTTGTAAAAACTCACCTTAATAAAGACTCTGTAATTGCAAAAAAAAAAAAAAGTTGCAGCTGTTTTGTTGACATTCTG CTX 1.00 LQ 0 other ,,,,,,, NM_001048241,NM_001048241,NM_001048241,NM_001048241,NM_024292,NM_024292,NM_024292,NM_024292 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, NM_001282692,NM_001282693,NM_001282694,NM_002021,NM_001282692,NM_001282693,NM_001282694,NM_002021 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001282692,NM_001282693,NM_001282694,NM_002021;geneB_transcript_strand_disagree=NM_001282692;geneB_transcript_strand_disagree=NM_001282693;geneB_transcript_strand_disagree=NM_001282694;geneB_transcript_strand_disagree=NM_002021 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 SLC44A1 chr9 108147784 + coding FSD1L chr9 108200562 + intergenic > 388 383 460 213 0.000 0.000 8660 5781 0.060 0.530 460 460 1525 725 CAGAATGCATACACAGCCACAGCTATCAACAGCACCAACTTCTGCACCTCAGCAAAGGATGCCTTTGTCATTCTGGTGGAGAATGCTTTGCGAGTGGCTACCATCAACACAGTAGGAGATTTTATGTTATTCCTTGGCAAGGTGCTGATAGTCTGCAGCACAGGTTTAGCTGGGATTATGCTGCTCAACTACCAGCAGGACTACACAGTATGGGTGCTGCCTCTGATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGTCTATTTATGAAATGGTAGTGGATGTATTATTCTTGTGTTTTGCCATTGATACAAAATACAATGATGGGAGCCCTGGCAGAGAATTCTATATGGATAAAGTGCTGATGGAGTTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCTGGTAAGGGAGGCGTCGCTGATTCCAGAGAGCTAAAGCCGATGCTGAAGAAAAGGTGACTGGTCTCATGAGCCCTGAAGAATGAACTCAGAGGAGGTTGTTTACATGAGGTTCTCCCACTCACCAGCTGTTGAGAGTCTGCGATTATGAAGAGCAGGATCTTATTACTTCAATGAAAGCATGTAACAAGTTTCTCAAACCACCAACAGCCAAGTGGATTTGGTACAGTGCGGCTGTCTAATAAATAATCAAAAGCAAA read_through 1444.10 RT 1 CLoss 0,0,0,0,0,0,0,0 NM_001286730,NM_001286730,NM_001286730,NM_001286730,NM_080546,NM_080546,NM_080546,NM_080546 ,,,,,,, ,,,,,,, ,,,,,,, 1950,1950,1950,1950,1950,1950,1950,1950 ,,,,,,, ,,,,,,, NM_001287192,NM_031919,NM_001287191,NM_001145313,NM_001287192,NM_031919,NM_001287191,NM_001145313 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_transcripts ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 FBXL5 chr4 15669664 + intergenic FAM200B chr4 15682903 + intergenic ? 231 236 388 292 0.000 0.000 6435 7847 0.640 0.050 388 388 362 369 CTTTTTAATAGAAAAATGAGAAGCAATTAATGATGAAGATATGATAAATAAAACATGAGTTGGCCAGAATATTTTTACTGATGTCTTCTCATTTGACTTCCTGGTATAAGATGGTCAATTTATCACGCCTGTAATCCCAGCACTTTGGGATGCCAATGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGACCAACATGTAGAAACCCCGTCTCTAATAAAAATACAAAATTAGCCAGGCGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGTTGTGGGAGGAGAATCGCTTGAACTCGGGAGGTGGAGGTTGCGGTGAGTCAAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTATCTCTTGGAGTGTATGAACCAGCGTCCTGGCCCCGCCAGGTCGGGGCTGGGGCGGGCGCGGGCCGGGAGCGCTTACCCCGCGGCAGGAGCGATTCAGCGCCACTACCTGCTTCGCCTGGTTGTGGTGTGGCTGCTGCGCCAACCGAAAGGCCTCCTTAATCCGCAGCAGTCTCTTTTCGCTCCCATGGCTCTGGGACTCTGTCCGGACTAGCCCTGTCCGCGCTCGGCTACATCCGGCCCGCCCACCAGCTCAGAGGCAGAGTTCTCCGCGGTGTCTCCTAGGGTTTCTTGTCAGN read_through 714.10 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SNORD6 chr11 93464919 - intergenic SNORA32 chr11 93464383 - intergenic > 3 190 358 332 0.000 0.000 61 5996 0.000 0.340 358 358 955 1497 GGCTTTTCCTGTAGCCTGCACATCGTTGGAAACGCCTCATAGAGTAACTCTGTGGTTTTACTTTACTCACAGGACTATTGTTAGATCTGTGGGAAGGAATTACAAGACAGTTGCTAAAAGTTTGAAAAAGACGGTTGCTAAACGTTATGAAAAACCAGATAATCTACTTTTTTACCTTAGGTATTGGCATACTCCACACATCTGTACCATTCTTGAGTGATCGCTTAGGAATGAATGTGATTTGAACTCATTCATGTTGAGAGGGTGTCAAATTGAGAACCAGGTAGATCCCCACCACCTACAGTAAAAAGGACCCTAAAGTAAATTGGTTGAAGAAATTAGATCCCAAAGATTCTTGGTGAATTTTGAAGTCTTCATCAGTATATCCATATTAAAACGAGATGACAGAAGCCAAAGTAATTATGGGCTGACAGGACAACTGGATCAGTTTCATTAAAAAGGGCAAACTTGAAGATAAATCTTTTGACTCCAGCTCTTTAGAGGATCTAAAGTGACCTTGATGGACAGTGGAAGAAATCACAACATGGAATTCCTCGAATAACAATTTATTGACTTTAAATAATTTTGTCTAATGCTACATATACACAATTAAAAAACCTTTACACTATTTCTAGAAAGTCAGCATGTATTTTTGGCTCGAAGTTTCTCTAGTGTTTTCTGTGGAAGGAG read_through 599.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 159516761 - intergenic TAGAP chr6 159485970 - intergenic > 69 71 132 265 0.000 0.000 2146 2402 0.800 0.880 132 132 85 80 CCTGCAGCTGGGCCTGCCCCTCAAGCACGCTGAGCCTGTCCTTCACAGCCCCATGGTGCTGACCCAGGGCCCTGAGACCACCAGGAGGCACCTCTTCCTCTTCAGGGACTGGCTGGTCATTGCCAAGCAGAGGTCTTCCAAGAGCTACAGAGTCGAACAGAAGCTGCATCTATCTGGCGTGCAGGCTGTCACCTGTGACAGAGAGGAAAGGCAGGATGGGGACAAAGACCAGGATCTCACTATCAGTTTAGGAAATTCTCTGGTCTTCATGCTGGCTTCTGACCCTTGTGTCGCCGAGTTTCCGTGAGTGCCAGCAGTTTCAATTACAGGTTTACAAAGCTAAGATCTTCAGGAAGCCTCTGGTCCTTTCACTAACTCATGACTGTTACAACAAAG read_through 454.80 RT 0 other 0,0,0 ,, ,, ,, ,, ,, ,, ,, NM_054114,NM_152133,NM_138810 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 NA chr19 28237006 - intergenic NA chr19 28223876 - intergenic ? 95 99 375 422 0.000 0.000 3497 3399 0.650 0.590 375 375 146 166 CTGAAACTGGTGTAGGAACAACCTCAGTTCTGTGAAAGGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGGTGTCCATCGCGCTTCCTTCACTGCCTTGATCATGTCGGGGTCACCACCTGCGGGGGTTTGTCCTGCAGACCCTGACTCAACGACGGATGAATAATGTACACTGACACAGATCTTATGCTTGTCAGTCCTGCTGAGCATCCAGGCCACTTACAGACTCCAAGAAGAGTCCTGTCAGCCACGGCTCTGACTTGTTGGCCCTCCCGGCATTTATTTAGCACACATTTAATGACAGAAGTCTCAGGCTGGAAACACTCTTTTTGTAGAACATACAAATGGACATTTCTAAGCACATTGAGGCCTATAATGAAAAATCAAATATCCCACAATGAAAACTAGAGGGAAGCTATCTGTGATAATGCTTTGTGGTGTATGGATTCATCTCACTGACTGAAACCTGAGTTTTGATTCACCAGGTTGGAAACTCTTTCTGCAGAATCTGCAAAGAAATATTTCTGAGCCCATTGAGGCCTACAGTGGAAAACTGAATATTCTGTGATAAAACTAGAAACACCCTATCTGTGAAAATGCTTTGTGATGTGTGGATTTTTCTCATCGAATGGAACCTCTGTTTTGACTCACAAGGGTGAAACACTATTTTAGTAGAATCTAGGAAGAAACATATCTGAGCCCATTTATGCCTACAGTGAGAAACTGAATACCCT read_through 344.80 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 FLJ46284 chr8 93694166 - intergenic NA chr8 93681195 - intergenic > 23 23 138 138 0.000 0.000 1427 1157 0.660 0.640 138 138 34 35 GGCAAGAAAAAGAATGAGAAAAAAGAAGCTCCCGTGGAAAGGGAATGGTGCTGAGAGTTCTCCTCCTGTCCAAAGGCAGATAGCTCTGCACGGAAAACACGATCATTCAATTCCAGGCGCAGCTATGTTCTACAGGACATGAAAGACCACATGATGGCTCCTTCCTGATCCCCAAGGCCTCTGGGTGTTTGACAGCCTTTTTGAGGGTTCACCAAGCCCTTTGCTGCTTATGGCAAGGTTATGTCTGATCTCAGATCCAAATTGGTGGTGCACAG read_through 258.40 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 TBC1D26 chr17 15652046 + intergenic CDRT15P2 chr17 15668422 + 5utr > 33 33 80 103 0.000 0.000 1254 913 0.770 0.870 80 80 42 48 GCCCAGGCTGGAGGGCAGTGGTGCGATCTCAGCTCACTGCAGCCTCTGCCCTCGCTCGCTGCATCCCTCCCTTCTGCAGCTCCTGGTCCATACGCAGACATAGCAGCACTTGCGGCACCGGCTGTCGAGCCAAAGCCAGCATGGGAAGAGCCCCCTCCAGAGAGAGCGCTGGAGGTGGAGGG read_through 216.70 RT 0 other 0 NM_178571 geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 181146986 - intergenic NA chr4 181070087 - intergenic ? 37 40 283 164 0.000 0.000 1648 2627 0.230 0.040 283 283 157 142 TTCACTGTTTATTAACAATTATAATATTTAGTCTTAGTCCTCTTCACACATTGCAGAAAGAATTTTGGAGTTTTCAAATTTAGCAATGTCAGTGGCAAAACCTCTCAGACTATGTGCTCTTGTCTTTGAGAATTCTGAGAGCTTTTCTTCACAGCTGCAGGCTCTTTTATTATCTCAATGTTCCCTCATTTTTCTACCGGCAAAATAACTTCAGAGTAAAGAAAATAAAAGCATCTTTGCTTCATTTTTTTTTTGCCTCCAGTTTCACCACCTTTCATTTTCAAGTGACACACGGCTATTAGCTGTCCTAATGCTTCATCCAGAATAAAGATCACATGAGAGGAATATCCAGAGGTTATTTTTAATCTCCTTTCTCTAGTTTACATGATCACTTCATTCAAGTCTTGCTGCGGTGCCAGGCGCGGAGGCTGAGGAGAGAGTCGGTG read_through 213.75 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CLEC12A chr12 10134728 + coding CLEC1B chr12 10147620 + intron > 20 23 259 140 0.000 0.000 1284 767 0.170 1.000 259 259 159 37 CAAATGTAAGCCTTGTCCAAGGAGATGGATTTGGCATAAGGACAGCTGTTATTTCCTAAGTGATGATGTTCAAACATGGCAGGAGAGTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAGATAAACAACAAAAATGCATTGGAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTGGTAAGTGACCCAGCTGCTGCTTCTATAACCCATAGTAGTGACTTGGACTGAGAGAAGAGGGAATCTCAAGAATAAGAGTTTCCAGTACTCCCTCCTATTCTAAGTGTCCAGTGACTTACATATTTTCTGAGATAACCGAG read_through 205.10 RT 0 CLoss ,,,,,,, NM_001207010,NM_001207010,NM_001300730,NM_001300730,NM_138337,NM_138337,NM_201623,NM_201623 ,,,,,,, ,,,,,,, ,,,,,,, 671,671,641,641,641,641,542,542 ,,,,,,, ,,,,,,, NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001099431,NM_016509;geneB_transcript_strand_disagree=NM_001099431;geneB_transcript_strand_disagree=NM_016509 ,,,,,,, ,,,,,,, MV4_11_RNAseq_1 FUT4 chr11 94279428 + 3utr PIWIL4 chr11 94292331 + intergenic > 22 22 140 134 0.000 0.000 613 1337 0.150 0.160 140 140 436 134 CCCGATTCACGTTTTTCTGGACCAAGGTGAAGCAAATTTGTGGTTGTAGAAGGAGCCTTGTTGGTGGAGAGTGGAAGGACTGTGGCTGCAGGTGGGACTTTGTTGTTTGGATTCCTCACAGCCTTGGCTCCTGAGAAAGATAACTGAGAAGCGGAGCTACTCACTTCGGATCACACAGCTCCTCACTGCACAGCAAAGGCTGATTCTACATGTCTTGGACTCCAAGGCTACTGGTTTTCCCTGTGAACCACCTTGAGATTAGGTGGATGAAAG read_through 195.00 RT 0 other 0 NM_002033 NM_152431 geneB_no_transcripts MV4_11_RNAseq_1 MAPK6 chr15 52349452 + intron BCL2L10 chr15 52392663 + intergenic > 27 27 118 96 0.000 0.000 809 1056 0.120 0.930 118 118 199 28 CTCTTACTATCCCTCCCCCAGTCCAGTCAGCCATTATGTCTCTCCTGTTAGAAGGACCTTCTCTTTCCTGCTTCAGTATTTGCTGTCTTTAGTTACCACATCGCAGCCAGGGTGGTCACATCCCAGAGAGGTCCGGCGAGCAGAGGGAGCCCGAGGGGGAGTTCAGGGGCCACGGGAAGCCAGAGAGGAGAGGGAGGGCCTGGAGCTTTGTCC read_through 186.50 RT 0 other 0 NM_002748 701 NM_020396 geneB_no_transcripts MV4_11_RNAseq_1 RAB8A chr19 16237797 + intron HSH2D chr19 16250545 + intron > 16 16 393 147 0.000 0.000 711 1067 0.040 0.480 394 394 547 137 NGGGCAGAGTTTGGGCAACATCAGACAGGGTGGTGAAGTGCCTGCAGCTGGTGACGGCCTCGAGTTGCGACCACCTCAGGCACGGCCTGTTTCTGGAGCCCAAAAATAGTTGAAATGTCAGGGCCAGGCGAGGTGGCTTATGCCTGTAATCCCAGCAGTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGAAGTTTGAGACCAGCCTAGCCAACATGGCGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCTGGTATGGTGGCAGATGCCTGTAATCTCAGCTATTCGGGAGGTTGAGGATCGCTTGAACCTGAAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCACTACACTCCAGCCTGGGAGACAGAACGAGACTCCATCAGCTGCGGCCTCTGCTGAGAAGCCCAGATCTGTCTCCCTGGAGAACCTGGTATCAGAGAGAGGGGGCCTTGGAATTCTAGCCCCGTTATCTCCCCATCAGGGCACCTTCGTTTTCCCCTCCACACCCTTCCTTCCTCTGGGGGACG read_through 177.80 RT 0 other , NM_005370,NM_005370 , , , 325,325 , , NM_001291274,NM_032855 , , , , 888,1059 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001291274,NM_032855;geneb_utr_codons=13 , , MV4_11_RNAseq_1 C12orf49 chr12 117130925 - intergenic NA chr12 117101898 - intergenic > 18 18 136 245 0.000 0.000 845 857 0.040 0.040 137 137 411 432 GTCTTCATATATGTAAGTAGCTTCATTTATATGGAAAACTATGCTGGTTCCTCTACCCTTTTAATATTTGATGTCGCATCAGCTTCCTTCACAGTTGGGATAAGCGGTCCGTGGCTTCTTGGGGACTTTTTGGACTCCTTTTCCATGTGGATACAAACAAATAAACTTGATAGAGACCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAAACCTGTCTCTAATTGCCCGCAGGTGTCCACTTTGCAAACAGGACTTTGTTCCTATTGGATTTTCTTAAAGCAGGGCACCTGGGAGAGAGCCAGGGACTCG read_through 170.20 RT 0 other 0 NM_024738 geneB_no_transcripts MV4_11_RNAseq_1 DHRS1 chr14 24761643 - intron RABGGTA chr14 24740516 - 5utr > 16 14 126 93 0.000 0.000 680 838 0.060 0.160 148 148 212 173 CTACACGACGCTCTTCCGATCTGTAAGGCTGGCTCCTCTCAGCTCCTCCTCTGCCTCATCCATGGACAGTTCCTTTGCTTGTGCTCCTCTTGGTTGGCTAGAGTAGGCATCACACTGGGGAGCGTGGGCAGCTGAGACCTTGGGGCTCCTCTTGTGGAACGTGCAAAGCCTGTCCCAGGACCTCTTTACACTCTGGGGGTCTCTGCCCAGGCACGCTTGCTGCTTCCGGACACAGCTGTG read_through 151.80 RT 0 other 0,0,0 NM_001136050,NM_138452, ,, 5,5, ,, 508,508, ,, ,, NM_004581,NM_004581,NM_004581 -64,-64,-64 1,1, tuple,tuple,tuple ,, 1704,1704,1704 52,52, ,, YTTLFRSVRLAPLSSSSASSMDSSFACAPLGWLE*ASHWGAWAAETLGLLLWNVQSLSQDLFTLWGSLPRHACCFRTQL,YTTLFRSVRLAPLSSSSASSMDSSFACAPLGWLE*ASHWGAWAAETLGLLLWNVQSLSQDLFTLWGSLPRHACCFRTQL, DHRS1:NM_001136050[1,5]-RABGGTA:NM_004581[1,16];DHRS1:NM_138452[1,5]-RABGGTA:NM_004581[1,16]; geneB_no_inframe_contig_found geneB_transcripts=NM_004581,NM_182836;geneb_utr_codons=13 ,, 1,1, MV4_11_RNAseq_1 LIG3 chr17 33307918 - intron CCT6B chr17 33281618 - coding > 14 14 98 119 0.000 0.000 843 506 0.200 0.380 98 98 61 27 TCCACCGGGTCCGGGACGCAGGCGGGAAGTGATCAAGGCTCCCTGAGTCCCACCCGAGCGCTCCCGGTTCAGCGCAGGAGGACGCACGCCGGGCCAGGGGCCTGCACCCTAGAATAATAGCTGAAGGATTTGAAGCTGCAAAGATAAAAGCACTTGAAGTTTTGGAGGAAGTTAAAGTGACAAAGGAGATGAAAAGAAAAATCCTCTTAGATGTAG read_through 134.90 RT 0 NLoss 0,0,0,0,0,0,0,0,0 NM_002311,NM_013975,NM_002311,NM_013975,NM_002311,NM_013975,,, ,,,,,,,, 1,1,1,1,1,1,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, ,,,,,,,, NM_001193529,NM_001193529,NM_001193530,NM_001193530,NM_006584,NM_006584,NM_001193529,NM_001193530,NM_006584 113,113,68,68,113,113,113,68,113 4,4,3,3,4,4,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 337,337,202,202,337,337,337,202,337 1482,1482,1458,1458,1593,1593,1482,1458,1593 32,32,32,32,32,32,,, ,,,,,,,, HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,HRVRDAGGK*SRLPESHPSAPGSAQEDARRARGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDV,,, LIG3:NM_002311[1,1]-CCT6B:NM_001193529[4,13];LIG3:NM_013975[1,1]-CCT6B:NM_001193529[4,13];LIG3:NM_002311[1,1]-CCT6B:NM_001193530[3,13];LIG3:NM_013975[1,1]-CCT6B:NM_001193530[3,13];LIG3:NM_002311[1,1]-CCT6B:NM_006584[4,14];LIG3:NM_013975[1,1]-CCT6B:NM_006584[4,14];;; geneB_transcripts=NM_001193529,NM_001193530,NM_006584 ,,,,,,,, 2,2,2,2,2,2,,, MV4_11_RNAseq_1 SNORD5 chr11 93466253 - intergenic SNORA8 chr11 93465458 - intergenic > 2 66 466 42 0.000 0.000 14 1279 0.000 0.110 466 466 1497 1946 CACCACCTGAAAGAATCATTGAAGCAAATGAATGTTGGTGAAGATTTAGAAAATGAAGATTTTGACAGTCGTAGATACAAATTTTTGGATGATGATGGATCCATTTCTCCTATTGAGGAGTCAACAGCAGAGGATGAGGATGCAACACATCTTGAAGATAACGAATGTGATATCAAATTGGCAGGGGATAGTTTCATAGTAAGTTCTGAATTCCCTGTAAGACTGAGTGTATACTTAGAAGAAGAGGATATTACTGAAGAAGCTGCTTTGTCTAAAAAGAGAGCTACAAAAGCCAAAAATACTGGACAGAGAGGCCTGAAAATGTGACAGGATCATGAATGTCAAAGGCTTTTATCTTGAGAACATGGTGTCTGGAGTTAAAGGTATTGGCATACTCCACACATCTGTACCATTCTTGAGTGATCGCTTAGGAATGAATGTGATTTGAACTCATTCATGTTGAGAGGGTGTCAAATTGAGAACCAGGTAGATCCCCACCACCTACAG read_through 127.90 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr11 60007626 + intergenic MS4A4A chr11 60059698 + coding > 18 0 148 95 0.000 0.000 622 0 0.160 0.000 148 148 111 130 ATGCAGTGGCTGAACACCATGAAGGAACTGGCACTTGGAGTCCGGACATCTAAAACTTGATAAAGGAAGGTGGCACAAGGAATATTATGTGGAGATTACTTCAGAACACTACAAGCAGTCCCTAATCAAGAGAGGCAAGAGCTAAAGCACCTTTTCTGCTGCCATGACAACCATGCAAGGAATGGAACAGGCCATGCCAGGGGCTGGCCCTGGTGTGCCCCAGCTGGGAAACATGGCTGTCAN read_through 124.40 RT 0 upTSS 3,2,3 ,, ,, ,, ,, ,, ,, ,, NM_001243266,NM_024021,NM_148975 14,-5,14 ,, tuple,tuple,tuple 42,,42 561,663,720 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001243266,NM_024021,NM_148975;geneb_utr_codons=6 ,, ,, MV4_11_RNAseq_1 MRE11A chr11 94224131 + coding FUT4 chr11 94278713 + coding ? 32 32 205 146 0.000 0.000 1276 1124 0.180 0.210 205 205 129 418 CAGGTATGTAATGTTTTCCTTGAGGGCTTATTTTCATGAAAAAGATCACCACCTAACAAAATAAAATCCACTTCATTTTCCTGGGCAAGTCTTAAAATTTCATCGAGTGTTACAAACGTATCATTTCCTCTGACTGCATCTTTCTCCATAAATCCAAGATGAATATCTGTTGCAACTAATATTTTAAATGTGTTTTCATCATCACTGCTTTTCCTCGACCGCAACCCCGCGGTCTATCGCCGCTACTTCCACTGGCGCCGGAGCTACGCTGTCCACATCACCTCCTTCTGGGACGAGCCTTGGTGCCGGGTGTGCCAGGCTGTACAGAGGGCTGGGGACCGGCCCAAGAG read_through 120.00 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 C21orf2 chr21 45761961 + intergenic TRPM2 chr21 45773662 + coding > 18 18 121 120 0.000 0.000 618 582 0.670 0.170 121 121 26 372 TAATCCCAACTACTTTGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGACTGTGCCATTGCACTCCAGTCTGCGCAACAAGAGCGAGACTCCGTCTGGGGATGGTCTCCAATCTCCGGCGCAGCAACAGCAGCCTCTTCAAGAGCTGGAGGCTACAGTGCCCCTTCGGCAACAATGACAAGGTAGGCTTTCTGCTGGTCAGCCTGCAGTTGGCA read_through 120.00 RT 0 NLoss 3 NM_003307 27 tuple geneB_CDS_mapping_exception=NM_003307:-2;geneA_no_transcript_IDs_found geneB_transcripts=NM_003307 MV4_11_RNAseq_1 GSDMC chr8 130735223 - intergenic NA chr8 130719428 - intergenic > 16 16 97 136 0.000 0.000 784 416 0.310 0.310 97 97 51 51 ACAAAAAAACTGCTAGATGCTGAGCCCGGATGGCCACCTAGCAGTGCAGAGGTGGTGCTTACACTGAAATGGGAATGGCACAGAAAAATAGAATGTGGCTGAGAATATGGCAGAGCTTGTTTTGGTTCTTTCCATCTGATCACTTCATCCTTCCAGGCACTGGGCATCCAGAGTTAAATAGATGCAACCCCTGCTGTGGAGAAGCTTACAGTGCCGTGAGAGGAAGTGACAG read_through 120.00 RT 0 other 0 NM_031415 geneB_no_transcripts MV4_11_RNAseq_1 GSDMC chr8 130735436 - intergenic NA chr8 130719428 - intergenic > 26 0 145 100 0.000 0.000 1166 0 0.510 0.000 145 145 50 51 CGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCTTGGGCGACAGAGAGAGACTCCATCTCAAAAAACAAAAACAGAAACAAAAAAACTGCTAGATGCTGAGCCCGGATGGCCACCTAGCAGTGCAGAGGGCTGAGAATATGGCAGAGCTTGTTTTGGTTCTTTCCATCTGATCACTTCATCCTTCCAGGCACTGGGCATCCAGAGTTAAATAGATGCAACCCCTGCTG read_through 116.60 RT 0 other 0 NM_031415 geneB_no_transcripts MV4_11_RNAseq_1 NA chr6 159542282 - intergenic NA chr6 159526336 - intergenic ? 14 18 200 363 0.000 0.000 652 1475 0.170 0.240 200 200 81 74 GTCTTCTGCTTGGAATAGCCCTTCTCAGGGCACCTCTGTCTGGAATGGCCCACGTGTGTTCTGCCTGCTCCGGTCCACTGTGATCCTGAGACTCTAAGCTCAGCTCCTGGCCCTCTTGGAGTGGCACCACCATGCCTGGTCCCCAGCCTCCCAGAGCACCCAAGGGGGAAAGCTGTGGTGTCCCTGCTACAAAGCACAGGCTCAGGAACCTGGCTCAGAGCTGCTCCTCAGTGCCAGCTGCTGGACTGGACAAGATTTTAGGCAAGGCACGGCCACACACCAGGAAGAGCCTGGCATCCGCAGTGACCCTCGAGCAGCTGTCCCTGCAGCTGGGCCTGCCCCTCAAGCACGCTGAGCCTGTCCTTCACAGCCCCATGGTGCTGACCCAGGGCCCTGAGACCACCAGGAGGCACCTCTTCCTCTTCAGGGACTGGCTGGTCATTGCCAAGCAGAGGTCTTCCAAGAGCTACAGAGTCGAACAGAAGCTGCATCTATCTGGCGTGCAGGCTGTCACCTGTGACAGAGAGGAAAGGCAGGATGGGGACAAAGACCAGGATCTCAC read_through 106.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CD300C chr17 72539210 - intron CD300LB chr17 72528780 - intergenic > 9 9 122 112 0.000 0.000 484 566 0.120 0.120 122 122 154 73 CCTGGCTCTGCAGTACCTAGGGATGGGACAAGGAGAGGCCCAGGACCCTGGTCAGGCCTGGGTGTGGCCGTGGGGCATGATGGATGCAGGGCATCTGTCCAGCACATCATTGGTGACCTTGTCACTCCGATGAGTGTCGTACCTTGGATTCCCGGCCAATGCAACAAAATGGTATGGCTCTGATGACTGGAGGAACACTAGGGTCCTTGGTCTCCCACTGGTTTGAATAAAAC read_through 105.00 RT 0 other 0 NM_006678 401 NM_174892 geneB_no_transcripts MV4_11_RNAseq_1 ZBTB33 chrX 119385343 - intron NKAPP1 chrX 119374208 - 3utr > 13 13 91 156 0.000 0.000 604 446 0.060 0.140 91 91 84 356 CCCTCTTCCCCATATGGACCCTGCCAGCTGCAACCGAGGTTTTTAACCCCAATTCACGTGCAAAGCAAGCTTCTTGCAAATACAGACGGAGAAAAATAGTAGTCTAGTCATTCAAGTGAAAGGTCCAAGAAAGGAAGAAAGAAAAATTTATCAAAAAGAAAACACAAGAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGGTAAGAAAGCCAACAGCATTCTGCAA read_through 105.00 RT 0 other , NM_001184742,NM_006777 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NSUN4 chr1 46826500 + coding FAAH chr1 46867763 + coding > 11 9 145 134 0.000 0.000 584 328 0.200 0.310 145 145 262 52 GGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCAACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGG read_through 91.20 RT 0 Fusion 0,0,0,0 NM_001256127,NM_001256128,NM_199044, ,,, 5,5,5, ,,, 731,731,878, ,,, ,,, NM_001441,NM_001441,NM_001441,NM_001441 66,66,66,66 2,2,2, tuple,tuple,tuple,tuple 196,196,196,196 1740,1740,1740,1740 48,48,48, ,,, GGHL*PGAGGCALYHRPPLPS*GGEQHL*AVKEEGATDIACAASAASCNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNK,GGHL*PGAGGCALYHRPPLPS*GGEQHL*AVKEEGATDIACAASAASCNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNK,GGHL*PGAGGCALYHRPPLPS*GGEQHL*AVKEEGATDIACAASAASCNPDLDSEALLALPLPQLVQKLHSRELAPEAVLFTYVGKAWEVNK, NSUN4:NM_001256127[1,5]-FAAH:NM_001441[2,15];NSUN4:NM_001256128[1,5]-FAAH:NM_001441[2,15];NSUN4:NM_199044[1,5]-FAAH:NM_001441[2,15]; geneB_transcripts=NM_001441 ,,, 0,0,0, MV4_11_RNAseq_1 OSBP2 chr22 31307418 + intergenic MORC2-AS1 chr22 31317575 + intergenic > 10 11 162 141 0.000 0.000 568 342 0.400 0.610 162 162 24 17 GGAGAAACACAGCGTCCTCTTCAGTGTCTTCAAACAGCATAAATTAGGCTGGGTACAGTGGCTCACACCTGTCATACCAGCACTTTGGGAGGCTGAGGCAGAAGGATCACTTGAGACCAGCAGTTGGAGACCATCATGGGAAAACAGAAGAGACCCCATCTCTTTCAACAAACACCATAAACCAAGCCAAGGACAAACGCATAGAAAACGGACTAATGTTAACTAAGTCCAAGAGGCTTCAGGCGCTTGGCCTCGGGTCAAAAGGGAGACATACAGGCTGGCTCTTCCGGGCAAGAAGAAAA read_through 91.00 RT 0 other 0,0,0,0,0,0 NM_001282740,NM_001282741,NM_001282742,NM_001282738,NM_001282739,NM_030758 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 PTPLA chr10 17595801 - intergenic NA chr10 17585788 - intergenic > 13 13 126 78 0.000 0.000 358 542 0.720 0.720 126 126 17 17 CTGGGATTGGCCAAGACTCAGCTGTTGTTACAGAGCTACAGTCTTGTCATGTTGCCCAGGCTGGTCTTGAACTCCTGACTTTGTGCAGTCCTCCCACCTCAGTCTCTTCAAGTGCTGGGATTACAGGAGCACAAGTATGATGGCAAGCCACATGGATTAGAGGAACAACCTAGAAATGGATAAGTGACATGACTGAAGGAGCC read_through 90.00 RT 0 other 0 NM_014241 geneB_no_transcripts MV4_11_RNAseq_1 ZNF544 chr19 58771271 + intron ZNF8 chr19 58789889 + intergenic > 13 13 207 141 0.000 0.000 389 511 0.480 0.050 207 207 236 245 GGTTGCAGCATTCTTTCCAGTCTTCAGATATCTTCTGCTGTGTCTTCTCATCACCTCCTCTGTGTTTCAAATCTCCCTCTGCCTTTCTCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATCACTTGAACCTGGGAGGTGGAGTTGCAGTTAGCCAAGATAATGCCACTTCACTTCAGCCTGGGCAACAGAGCCAGGCTCTCTAACTCGTCCTGTGACTTTGATGCGTGTGCGTTTTAGGCACCGGGGAGCAGAGGGTAAAGCGGCGCAGCTCCGGGCCTCCTCCCGCGCAAGTTCCCGAGAAGAGCAGGTCCGGCCCGCGCAGACGTGCACGGTCCCCA read_through 90.00 RT 0 other 0 NM_014480 245 NM_021089 1728 geneB_no_transcripts MV4_11_RNAseq_1 NKAPP1 chrX 119374080 - 3utr RHOXF2_locB,RHOXF2B_locB chrX 119314087 - intergenic > 10 10 110 127 0.000 0.000 593 307 0.040 0.670 110 110 411 14 TTCAAGTGAAAGGTCCAAGAAAGGAAGAAAGAAAAATTTATCAAAAAGAAAACACAAGAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGGGGAAAGAATGGTGAGAAGGAGCAGAGTGAGATGAATGAAATTTGATCTCTGTCGTTGGCTGTGGTTGCTACTCTTGGACAGTAACTCGATGACCATGAAGAAGACTTCCTCATTTCATCACATCC read_through 90.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 ARF3 chr12 49333438 - coding FKBP11 chr12 49319461 - intergenic > 12 12 176 78 0.000 0.000 214 685 0.050 0.270 176 176 543 43 GCCAGGACAAGATTCGACCCCTCTGGAGACACTACTTCCAGAACACCCAAGGGTTGATATTTGTGGTCGACAGCAATGATCGGGAGCGAGTAAATGAGGCCCGGGAAGAGCTGATGAGAATGCTGGCGGAGGACGAGCTCCGGGATGCTGTACTCCTTGTCTTTGCAAACAAACAGGACAGAACGTCTAACGGATGCGTCAGAACCTGCGCCCTCCGGATCTTGGAGGGTACAGAGGGCGCCCCTCGGCCTCC read_through 89.90 RT 0 CLoss 0,0 NM_001659,NM_001659 , , , 384,384 , , NM_016594,NM_001143782 , , , , 606,441 , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NEUROG3 chr10 71332823 + intron C10orf35 chr10 71391236 + 5utr > 6 6 90 127 0.000 0.000 517 377 0.130 0.350 90 90 379 12 GGGAAGGACCGCTCCGTCTCACGGGTCACTTGGACAGTGGGCGCACCCGAGGGTTGAGGCGTCATCCTACGGCGGGGTCAGAGGGAAGGACACAGCATCTACTCAGCGTGGGTCACCTCTGTGAACATCACTGACTGCAAGCCTCCCTCAATTTCTGGTGCAGCCCATCAGGGACCCACAGCGCCTGGGAGGATGGTGCGGATCTTGGCCAATGGG read_through 89.40 RT 0 other 0,0 NM_020999, , 1, , , , , NM_145306,NM_145306 -34,-34 2, tuple,tuple , 366,366 32, , GKDRSVSRVTWTVGAPEG*GVILRRGQREGHSIYSAWVTSVNITDCKPPSISGAAHQGPTAPGRMVRILANG, NEUROG3:NM_020999[1,1]-C10orf35:NM_145306[2,4]; geneB_transcripts=NM_145306;geneb_utr_codons=13 , 0, MV4_11_RNAseq_1 UBA2 chr19 34957919 + coding WTIP chr19 34981281 + coding > 11 11 119 58 0.000 0.000 176 424 0.010 1.000 119 119 2721 12 GTTGAATTTGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAACAAGCTGAAGATGCTGCCAAAAGCATAACCAATGGCAGTGATGATGGAGCTCAGCCCTCCACCTCCACAGGCATTTGCATCAAGTGTGGGCTTGGCATCTACGGAGCCCAGCAGGCGTGCCAGGCAAT read_through 84.81 RT 0 Fusion 1 NM_005499 581 16 perfect 1741 38 116 NM_001080436 223 2 tuple 668 1293 39 117 VEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTGICIKCGLGIYGAQQACQA UBA2:NM_005499[1,16]-WTIP:NM_001080436[2,8] geneB_transcripts=NM_001080436 0 MV4_11_RNAseq_1 SLC7A5P1 chr16 29624424 - 3utr SMG1P2_locA chr16 29580650 - intergenic > 8 7 178 133 0.000 0.000 398 438 0.020 0.020 178 178 395 398 CTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCGTCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCAGCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCATGGCCTGCCACTGCGTGCATTGACTTGATGCAAAACATCACAAAGGCTCGATGTTATACAGTATGCGATTTTTGAGAACTGATAGTGCATCAGCTGACCCAGGTAATTTAAAATATTCTTCATCCAGAGATAGAGGTGGTTCTTCCTCTT read_through 83.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 IGSF23 chr19 45135920 + intron PVR chr19 45147026 + intergenic > 15 14 132 164 0.000 0.000 314 521 1.000 0.930 132 132 16 14 CTCAGCATCAGCCTCGACATGGCTGCAACCGGGGGGTCCTCAGGATCCTCCCGGAGTCTCTTCCTTGGCATCTGGCTCATGCTAAAATTTCAGGTGTCTTGATGGTATCCAAATCAGCTGTTCATGTTGGCCTGGAATGTGGGCGACCTCACACAGGAAGCCGCCTCTTCTAGTGGGCACCGACGGAGCGAGCGCGCGTCTGCAGCGGGACTGAGCGCCGGGAGAGACCTGCGCAGGCGCAGGCGCGCGGGGAGGGCCAGCCTGGGTGGCCCACCCCGCGCCTGGCGGGACTGGC read_through 83.50 RT 0 other 0,0,0,0 NM_001205280,NM_001205280,NM_001205280,NM_001205280 ,,, ,,, ,,, 546,546,546,546 ,,, ,,, NM_001135770,NM_001135769,NM_001135768,NM_006505 ,,, ,,, ,,, ,,, ,1095,1119, ,,, ,,, ,,, ;;; geneB_no_transcripts ,,, ,,, MV4_11_RNAseq_1 NA chr4 115380535 + intergenic NA chr4 115412008 + intergenic ? 22 23 123 144 0.000 0.000 434 1073 0.920 0.720 123 123 23 31 CTCTACCATCCCCACCACATCTACCTGTCTACCTGTGTGTGTTCCTAAACTCCAGCTTCTCTCATGAAAGAACTCTCCATGCATCTGGCTTAAGGTCATCCCATCCCTGATCTCCACTTAAGGTTCATGGCTGGAGGGAGCTTGCCTTGAGACTCAAATGAAATTTTGAACTTTAAACGATCGAGTTGTTGCTGAAACAGGTAAGACTTTGCAGCTATAGGGTGATTGTATTTCGTACTTGAAAAAGACATGAGTTTGAGGGGCCA read_through 75.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 GPR25 chr1 200846324 + intergenic C1orf106 chr1 200857443 + intergenic > 10 10 122 106 0.000 0.000 369 381 0.830 0.910 122 122 11 10 CTTGCTTGTCCCTCCTGTCAGGATGCAAGCTCCATGCATGCAGACGGTTTTGTCTGTTGGTTCAAGGCTGTGTTCCCAGTGCCTGGAGCATGCCTGCACATCTCAGGCACTCACTAACTACCCGCCTGCAGCCCAGCCTGCACCCGATCAGTTGAGAGGGATCTGGTCCACAGAGGCTGAGGCCAATAGAGGACAGTGCCCCTTCTGCACCTGCCTCTGGCTGTGAG read_through 75.00 RT 0 other 0 NM_005298 NM_018265 geneB_no_transcripts MV4_11_RNAseq_1 NA chr4 180974098 + intergenic NA chr4 181069968 + intergenic ? 22 22 98 103 0.000 0.000 759 709 0.790 0.230 98 98 27 96 AGGACGCAGTAAAAAGGCGCTGTCTAGGAGGAACAGGCCCTCCCTGGACACTGAATCTGCTGCTGTATTGATCTTGGACTTCTTAGCCTCTAGAATGACTTGAATGAAGTGATCATGTAAACTAGAGAAAGGAGATTAAAAATAACCTCTGGATATTCCTCTCATGTGATCTTTATTCTGGATGAAGCATTAGGACAGCT read_through 73.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 C20orf197 chr20 58631063 + 5utr MIR646HG chr20 58696084 + intergenic > 6 6 109 81 0.000 0.000 326 354 0.040 0.180 109 109 455 33 GCAGGAAACAGTGGTTTCCTGTTCATATCCTGCCTGAGCCTGGGCCGGGTGGAGGTGTCCTGCATGGAGTCTTGTGAAATCGCGTGGACTGCAACACCCAGCAGCGCGGGAGAAGTGAAATTCTACCTCACTTTTTTAAAAGAAGAGCCTGGAATTGGCCTATCCGTCTTTTTCCCCGTTGGATCACAG read_through 68.00 RT 0 other NM_173644 geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 49910003 + intergenic PARP8 chr5 49935089 + intergenic > 9 1 119 211 0.000 0.000 658 16 0.130 0.180 154 154 135 240 TGGATCCATTCCTATTCAGCCAAGCAAGACTCCATCTGTAGTCCCAGCCACTGGGAGACTTGAGTCCAGGAGTTCAAGACTGTAGTATGCAATGATCAAGCCTGTGAATAGCCACTGCACTCCAGAGTGGACAACATAGCAAGATTCCCATCTCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTCTATGTTCAGGTTTCACCAGGTTTATGTTTTTAATTAATATCCTATTCAGCTTTCTGTAATTTCCACTGAGGTTTTAGTTCTGCAGGCTGCACAAGAAGCATGGCCCAAGCATCTGCTTCTGGTGAAAGCCTCACGTGCTGCTGCATTCATG read_through 67.40 RT 0 other 0 NM_001178055 geneB_no_transcripts MV4_11_RNAseq_1 LINC00662 chr19 28283908 - 3utr NA chr19 28223875 - intergenic > 1 11 95 265 0.000 0.000 8 642 0.070 0.070 95 95 224 166 GGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGCTGGAAACACTCTTTTTGTAGAACATACAAATGGACATTTCTAAGCACATTGAGGCCTATAATGAAAAATCAAATATCCCACAATGAAAACTAGAGGGAAGCTATCTGTGATAATGCTTTGTGGTGTATGGATTCATCTCACTGACTGAAACCTGAGTTTTGATTCACCAGGTTGGAAACTCTTTCTGCAGAATCTGCAAAGAAATATTTCTGAGCCCATTGAGGCCTACAGTGGAAAACTGAATATTCTGTGATAAAACTAG read_through 65.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 164556820 - intergenic NA chr5 164499076 - intergenic ? 12 12 296 124 0.000 0.000 602 647 0.350 0.710 296 296 33 16 CCGGGAAAGGCAAAAACCACAATAGTTTTAGGTGCATGAAAGCAGACAGAAATTGTGCTATACTTTGTGGTCATAAAAAACAGCAGAAAGATTTACAGTGGTGACCAGTAGCGGCTTGGTATGGCAACAGTAGAAATGGACGGTATTAAAGCATGTCCAGACAAAGCTTCCAAGAGGATTCCTGTGCCTCCAGCAGGGTATACTTGGGCATTCAGAAGTTCCCCGGCTTCCCTAAGAGGAGCTTGGCAGCCGCTGAGGAAGAGCCTGTAGTCCTGGAGAGGCTCCACGATCAGTAATCTAAAATTGATCACGTAGTAGGAAGTAAAATGCTCCTCAGCAAATGCAAAAAAACTGAAATCATAAAAAATCATCTCTCAGATCACAGCACAATCAAATTAGAACTCAAGAATAAGAAACTG read_through 62.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 TIFAB chr5 134787899 - 5utr C5orf20 chr5 134780202 - 3utr > 12 7 234 274 0.000 0.000 156 465 0.050 0.060 234 234 467 708 CCACGCTGGGGTTTCTCAAACTCTCAGCAGTGGAATTGCACTTCTGCAATGAAAAATTACACTTCTATTTTCTTTCCTAAAGGGAAAAAGGAAGAATGCAACAAAACTGAAGTATGTTCTGCCACGTTCCTGAACTGCAGCCATAGGAGCCCTCCCAGCCCTACCCAAACCAGCCTACTCCCTCTCAAGAGCTCACAGCTGCAGGACTAGAGCCAGATGTGCCCCGGCAATAAGCATCCACCCCGTGACACGTAGTGGTGGCTGATGTCGCCACAGTACCATGAGGTTAACAGGTCCTCCCTCCAGCTTCCCTCATGGTGGCAGCCTAACCTGCATTGCAGCCGTTCACCGGACACCGCACCAGACCCTCAAAACCCATCCAAGACTGTGGGAGGAGTAAACAACCCAGCCCAGTTAAGAGGAGATGCCGAATTTAATGAACCCTATTTGAATTGCAGGGCTGTGATTCCTCTTACCTTTAACGTGAACTCACAGGCGGATTAAAGTAAACAACCCAGCCCAGTTAAGAGGAGATGCCGAATTTAAT read_through 62.10 RT 0 other NM_001099221 NM_130848 735 geneB_no_inframe_contig_found geneB_transcripts=NM_130848;geneb_utr_codons=13 MV4_11_RNAseq_1 EFCAB14 chr1 47144141 - coding ATPAF1 chr1 47131036 - coding > 6 5 143 86 0.000 0.000 177 130 0.100 0.020 143 143 68 287 TGGCCAGGACGTGGATGGGAAGCTGACCTACCAGGAAATCTGGACCTCCCTAGGTTCTGCTATGCCAGAACCAGAGAGCTTGAGAGCATTTGATTCCGATGGAGATGGAAGATACTCATTCCTGGAGCTAAGGGTAGCTTTAGGTCAGACCCAGCTGCTTTTGAGTCCCGCCTGGAGAAACGCAGTGAATTTCGGAAGCAGCCAGTGGGGCATTCCAGGCAAGGTGAT read_through 61.40 RT 0 Fusion 0,0,1,0 NM_014774,NM_014774,NM_014774,NM_014774 ,,495, 11,11,11,11 ,,tuple, 1480,1480,1480,1480 ,,47, ,,144, NM_001042546,NM_001243728,NM_001256418,NM_022745 112,1,-92,112 2,2,2,2 tuple,blat,tuple,tuple 336,3,,336 852,723,534,1056 47,48,50,47 ,,151, WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD,WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD,GQDVDGKLTYQEIWTSLGSAMPEPESLRAFDSDGDGRYSFLELRVALGQTQLLLSPAWRNAVNFGSSQWGIPGKV,WPGRGWEADLPGNLDLPRFCYARTRELESI*FRWRWKILIPGAKGSFRSDPAAFESRLEKRSEFRKQPVGHSRQGD EFCAB14:NM_014774[1,11]-ATPAF1:NM_001042546[2,7];EFCAB14:NM_014774[1,11]-ATPAF1:NM_001243728[2,9];EFCAB14:NM_014774[1,11]-ATPAF1:NM_001256418[2,10];EFCAB14:NM_014774[1,11]-ATPAF1:NM_022745[2,9] geneB_transcripts=NM_001042546,NM_001243728,NM_001256418,NM_022745;geneb_utr_codons=13 ,,QT, 0,0,1,0 MV4_11_RNAseq_1 NA chr9 32282503 + intergenic ACO1 chr9 32351830 + intergenic > 12 12 61 122 0.000 0.000 612 288 0.920 0.500 61 61 12 23 TGGCCAGCCAGATTTGACTTTATCTTTTCTTTGGGAGTGCCACTTCATCAGATGGGTCTCCTTGAACTCTCAGTCCTTCTCATATGGAATGTCTGGCCTGAAGAAACAATTGAAGAGGACTTGAAAGCAGGGAGGTTCACAAATAGCAAGAAATAATAAGGATCTTGATGAAGACTATGAAG read_through 61.23 RT 0 other 0,0 , , , , , , , NM_001278352,NM_002197 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NA chr10 31394868 - intergenic ZNF438 chr10 31322339 - intergenic > 5 5 83 123 0.000 0.000 382 218 0.830 0.830 83 83 5 5 AGTCCTCCAAACCCGGACCCCTCAAAGCACCTCATGATCAATAGTGGTGGGGTCGGGGGTGGGCGGTGAGAAATCAACTGCTCAACTGGAGCTGCCTTGCAAAATCCCTGCCCTGGCCATCTGCCGTGGTTCCAAATAAGTTTGTAAAAGTGAATCTTGCCATTTTCAATACTTCCTCCTTTGGGTCTATTTATTCCGAAGTCTG read_through 60.00 RT 0 other 0,0,0,0,0,0 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001143768,NM_182755,NM_001143767,NM_001143766,NM_001143771,NM_001143770 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, MV4_11_RNAseq_1 BUB3 chr10 124922344 + coding NA chr10 124988633 + intergenic > 9 10 195 129 0.000 0.000 422 178 0.010 0.670 195 195 2914 14 ATTTGGGATCCATTTAACAAAAAGCGACTGTGCCAATTCCATCGGTACCCCACGAGCATCGCATCACTTGCCTTCAGTAATGATGGGACTACGCTTGCAATAGCGTCATCATATATGTATGAAATGGATGACACAGAACATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGATGCAGAAACAAAACCCAATTCCCCTGGGAATCTGTCTGTGACTACGGAGACCTCACACCATGAGAAGGGACTATACCCCCTTGGCCCATGCACCTGTTAGGCTCCCTCACCTGACCATTAGAGAGCACCTTGACAGAGAGCTGTTAG read_through 60.00 RT 0 CLoss , NM_001007793,NM_004725 , , , 971,971 , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 PPP2R2D chr10 133761295 + coding BNIP3 chr10 133809746 + intergenic > 5 5 99 120 0.000 0.000 340 260 0.090 0.720 99 99 234 6 CACCAGGTCCACGAGTACCTGCGCAGCAAGCTCTGCTCTCTCTATGAGAACGACTGCATCTTTGACAAGTTTGAGTGTTGCTGGAACGGTTCGGATAGAGACAGGGTCCCACCATTTTGCCCAGGCTGGTCTCAAACTCCTGAGCCAAGTGATCCACCTGCCTCAGCCTCCCAAAGCACTGGGATGACAGGCGTGAGCCACCATACCCGGCCCCAGCA read_through 60.00 RT 0 CLoss 0,0 NM_001291310,NM_018461 , , , 587, , , NM_004052,NM_004052 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NA chr16 85887635 + intergenic IRF8,MIR6774 chr16 85912506 + intergenic > 9 9 87 104 0.000 0.000 336 264 0.690 0.750 87 87 12 11 GCCCTAATGGCAGCTATAATTTGGAAGTCAAATGCAGCAGGGAGCTCTTAGAGCTGATGCATGATTCCTGCATACAGGCAGCCAAGCACATCTCAACTAATGACAGCCATGTCCCTGACTCTCCCCGGACACATATGACCAGTGGTTGCCATGCCAGGTGGACAGGAGGAGGCAGTGCCTGCCTGAAGGA read_through 60.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 RNF144A chr2 7170346 + coding LOC101929452 chr2 7215725 + intron > 8 8 90 125 0.000 0.000 372 228 0.250 0.540 90 90 20 8 ATGATTTCCTTCTGATACACTACGATAAGGGACCCTGCCGGAACAAGCTGGGCCACTCCCGGGCATCTGTGATCTGGCATCGGACACAGTGATTTGATGCCTCCTGCCGTGTCATGACAAAGCAGAAAGGTTCTCACCAGATGCAGCCACCTGATCTTGGACTTTTCAGCCTCCAGAACTGTGAGTAAAATTACCTCTATTTTTTATAAATTAC read_through 60.00 RT 0 CLoss NM_014746 747 geneB_no_transcripts MV4_11_RNAseq_1 KIT chr4 55619579 + intergenic NA chr4 55697968 + intergenic > 9 9 120 125 0.000 0.000 312 288 0.820 0.120 120 120 10 77 GGTCCCTTGAAACCAGGCATTTCTGTTGCTCCTGTACCAGCTGGGGAGCCAGGTCTTTGGTGCCAGATATACATTGATAAATGAGGCATAGACAGCATCCTTAAGAAGCAGATGGGCTCCTGGTCCAGGAGTCAGTGACACTGAAGGAAGATCCAGGAGAAAAGGGGAATAATTGAGGCCCAGCTCTGCTTTATTCCAAGGTGAGTTTGCAGATCAGCAACGAAGTGTGTGAGCTACAAAATGG read_through 60.00 RT 0 other 0,0 NM_001093772,NM_000222 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 EPHB4 chr7 100435201 + intergenic SLC12A9 chr7 100449598 + intergenic ? 17 17 129 114 0.000 0.000 484 716 0.470 0.490 129 129 35 34 CGTTGGTTGCCCTCTCTCTGAAGCCATCATAGTCGCCGCCATCTTTCCTTCCCGGCCGTCAGTCACGTGGGCAGCACGCCCCAGGCCTCCGACTGCTGGCGTGCAGTGGGGCGGATTCCGGAGGATTCAGCCTTAGGAGGGAGGTTCGAGTTTATGCCCATTTTACATATGAGGACGCGTTGGCAGGTGGTACTGCTGTTCATGGGATCTGTAAAGAGTGAAGAAGGAGTCTCAGCTCTCAG read_through 60.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 IMPDH1 chr7 128066568 + intergenic HILPDA chr7 128090356 + intergenic ? 8 8 132 96 0.000 0.000 411 789 0.730 0.670 132 132 10 11 GGGGACATCTGTAATCCCAGCTACTCAGGAGGCTGAGGCCGAAGAATTGCTTGAACTCGGGAGGTGGACGTTGCAGTGAGCTGAGATCGGGCCACTGCACTCCAGCCTGGTCGGACAGAGCAAGAATCTGTCATTTTTTCTTGCATTTCCCTATTTCCTTTTGGGTTCAGTTTTCTTGTGTCTTAGGTTCATTCTTCAGTAGTTTCCACGGTAAGGGCCTACGGCAG read_through 60.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr8 115031770 - intergenic NA chr8 115010285 - intergenic ? 9 9 147 200 0.000 0.000 354 846 0.560 0.600 147 147 15 14 AAAGGCACTAGAGGATTTACGTCTGTGAGAGGAAGGAAATAAAGAATTCCCCTGCACACGTTCTCTTGCCTGACACCATGTAAGACATTCACTGCTTCTCCTTTGCCTTCCATCATGATTGTGAGACCTCCCCAGACATGTGGAACTAAACTCTCAATCTGGGATGTACTAATTCCTCACATTTGCTTCAAGAGCTTCTCCACTTATGTGCTGTGGATATCCCTGGGCAAGTCACGTACATCTTCTATGCTCCTGTTTGCTCATTTTAAGGATAGAAATAATAACAGTACCATATAAGGTTGCTGCATCATTAAATGAAATTTTTTTATAAACACATGTGTTTAAA read_through 60.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CLECL1 chr12 9885545 - coding CLEC2D chr12 9855036 - intergenic > 11 11 143 75 0.000 0.000 253 338 0.050 0.190 143 143 768 58 ATATGATTGTCCCTTCAGTGGGACATCATTTGTGGTCTTCTCTCTCTTTTTGATCTGTGCAATGGCTGGAGATGTAGTCTACGCTGACATCAAAACTGTTCGGACTTCCCCGTTAGAACTCGCGTTTCCACTTCAGAGATCTGGCCCCATCACCAGAGTGGCAGAGCAGCAGAGCAGCGGAATAGCAGAGTGACAGAGAAAGAAAGAAAAGAAGAAGAGATCGGAA read_through 59.10 RT 0 CLoss 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001253750,NM_001253750,NM_001253750,NM_001253750,NM_001253750,NM_001267701,NM_001267701,NM_001267701,NM_001267701,NM_001267701,NM_172004,NM_172004,NM_172004,NM_172004,NM_172004 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, 316,316,316,316,316,316,316,316,316,316,316,316,316,316,316 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, NM_013269,NM_001004419,NM_001197318,NM_001197319,NM_001197317,NM_013269,NM_001004419,NM_001197318,NM_001197319,NM_001197317,NM_013269,NM_001004419,NM_001197318,NM_001197319,NM_001197317 ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, ;;;;;;;;;;;;;; geneB_no_transcripts ,,,,,,,,,,,,,, ,,,,,,,,,,,,,, MV4_11_RNAseq_1 TAF1D chr11 93469307 - 3utr SNORA40 chr11 93467827 - intergenic > 3 18 251 379 0.000 0.000 137 426 0.010 0.070 251 251 983 788 GGATCCATTTCTCCTATTGAGGAGTCAACAGCAGAGGATGAGGATGCAACACATCTTGAAGATAACGAATGTGATATCAAATTGGCAGGGGATAGTTTCATAGTAAGTTCTGAATTCCCTGTAAGACTGAGTGTATACTTAGAAGAAGAGGATATTACTGAAGAAGCTGCTTTGTCTAAAAAGAGAGCTACAAAAGCCAAAAATACTGGACAGAGAGGCCTGAAAATGTGACAGGATCATGAATGTCAAAGGCTTTTATCTTGAGAACATGGTGTCTGGAGTTAAAGGTATTGGCATACTCCACACATCTGTACCATTCTTGAGTGATCGCTTAGGAATGAATGTGATTTGAACTCATTCATGTTGAGAGGGTGTCAAATTGAGAACCAGGTAGATCCCCACCACCTACAGTAAAAAGGACCCTAAAGTAAATTGGTTGAAGAAATTAGATCCCAAAGATTCTTGGTGAATTTTGAAGTCTTCATCAGTATATCCATATTAAAACGAGATGACAGAAGCCAAAGTAATTATGGGCTGACAGGACAACTGGATCAGTTTCATTAAAAAGGGCGAACTTGAAGATAAATCTTTTGACTCCAGCTCTTTAGAGGATCTAAAGTGACCTTGAT read_through 56.30 RT 1 other NM_024116 geneB_no_transcripts MV4_11_RNAseq_1 PIGC chr1 172413128 - 5utr DNM3 chr1 172369055 - intron > 4 4 101 195 0.000 0.000 292 247 0.060 0.500 101 101 104 4 GACCCGGAAGTGCTTGGCCACAGTCGCAGCCCCGGCGCCCCGAAGCGGGAAAAAGGCTGGGTGCCGCCGTCCCCCAGCTGCGCAACCCTAGGAACTCTCGGCAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAGAGGCTGAGCTGGAATGGCTTCTTCATCATTAAGGGCTGACCTATTGGCTTGGCATTGAAATCAATTTAGAACAAATGGTCTCCATTTCAAGTCAGC read_through 53.90 RT 0 other ,,,,, NM_002642,NM_002642,NM_139240,NM_139240,NM_153747,NM_153747 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001136127,NM_015569,NM_001136127,NM_015569,NM_001136127,NM_015569 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001136127,NM_015569;geneB_transcript_strand_disagree=NM_001136127;geneB_transcript_strand_disagree=NM_015569 ,,,,, ,,,,, MV4_11_RNAseq_1 C12orf49 chr12 117127765 - intergenic NA chr12 117100051 - intergenic > 14 0 111 147 0.000 0.000 524 0 0.030 0.180 111 111 408 432 GGAGAAAAAGTTAATTGCAGTGAGGGAGCTCAAACTGTCACAAGAAGAAAGTCTCTTGTCTGGCATCTGCAGGCTGCCTCTTTATACACGGTCGTCCTCGTCTCGGGTGAACTGGCTCCTGTGCTCACAGCGCAGCACCCCTTACCCGTCAGCCTCTTAGCGAGCTCTGCTGCACCTCAGAATCCTCCTTAACCCAGCTCTTCAGGAAGCCACCGCTGGTGAGTTGGGGTCTGCGCTGAAGAGGGAGAGCTGGTGAT read_through 52.40 RT 0 other 0 NM_024738 geneB_no_transcripts MV4_11_RNAseq_1 TSG101 chr11 18502071 - 3utr LDHAL6A chr11 18490766 - intron > 3 4 265 146 0.000 0.000 195 293 0.010 0.200 265 265 911 23 AAACAATGATATCGATGAAGTTATCATTCCCACAGCTCCCTTATACAAACAGATCCTGAATCTGTATGCAGAAGAAAACGCTATTGAAGACACTATCTTTTACTTGGGAGAAGCCTTGAGAAGGGGCGTGATAGACCTGGATGTCTTCCTGAAGCATGTACGTCTTCTGTCCCGTAAACAGTTCCAGCTGAGGGCACTAATGCAAAAAGCAAGAAAGACTGCCGGTCTCAGTGACCTCTACTGACTTCTCTGATACCAGCTGGAGACTTCAGTGCCCTGAACGGTTAGAGAAATTAATGAAGGAGCTCCACCAGGTGCCTTCACAACTCTGAGTCATATCAGAATCTCTCCACAGCTCTCCTTTCAAAAATGACACCGTGACATTTCAGGATGTGAAAAAACTTACTGGA read_through 48.80 RT 0 other , NM_006292,NM_006292 , , , , , , NM_001144071,NM_144972 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001144071,NM_144972;geneB_transcript_strand_disagree=NM_001144071;geneB_transcript_strand_disagree=NM_144972 , , MV4_11_RNAseq_1 NA chr3 18567879 - intergenic SATB1 chr3 18486934 - intergenic > 9 8 352 41 0.000 0.000 121 472 0.090 0.170 352 352 100 46 AAGCTCCTTTCCTCTTGGGGGTTACGCTGTCTTCAATACAAGGTCAGTTAATTCAAAGCTTATTTAATGTCTGCCATGAGAAGAGCATTTCAAGAATGTAGAGGTCTGGGCTGTGAAATTGATACCTTTCCATCATGAATTAATCAGCATCCTCCGACTTGAACGGGTGTTGGATGAGAAAGTTCAGGCTTTCCTGACCTGAAGTCTCTTCATGAATTTCTGGAAGATTCTTTTATTTATTTATTTTTGTTCTGGTGTTAAAGAACCCAGTATAAGGCAAGAAGAAAAATCAGCTAAGGAGAACTTCTGCTTCCTGTCAAGATGGAGAAACAGGAACAGTTTACTCTTCCACCCCTCGAGGCTGAGGGTCCTGTCTTCCGCGCCAACCCCCG read_through 47.20 RT 0 other 0 NM_001131010 geneB_no_transcripts MV4_11_RNAseq_1 NA chr2 140169141 + intergenic NA chr2 140201097 + intergenic ? 8 9 247 141 0.000 0.000 434 476 0.240 0.330 247 247 32 26 CTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACATAACCACTATGCTAGACCAGATACAGGAAATCTTCATAACCTCAGGAAGTTCTCCTGTGCCTCTTTGCAGTCACTTCCTCTCCGTGTCTTCCTCCCACCCCCGCCATCTGAGGCAACCACAACTGGAATTTCTATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGACATGCAATGATTAAGAATTATATCATGGAAAATTGGGTAATCATCCCCTGAAACAAGAGAGAAGATCCTGAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAACAAAGCCTCCAAGAAATATGGGGCTATGTGAAAAGAC read_through 45.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr9 84849460 + intergenic NA chr9 84888322 + intergenic ? 7 8 118 141 0.000 0.000 507 403 0.880 0.890 118 118 7 8 TGAAAGCTGAGGATTCCAAGAAACGACAAGAAAGACAGGAAAAGAACAACAGGGGAACCAAGAGATTATATTGCTGCTTGAAAATTGTGAAGATCTACATTATAGGCAACATTCCAGATATGGAAACTGAGCCCTCACACATGGACTGAATTCTGACAAGCAGAGGATAAAGGCAGAACAACATGACTGAAGGGAAGATGCTTTTGTGATATATCCCAGCATGCTGATGACCCCAAGGAGGACCACTGGATACCTAGC read_through 45.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr18 68198932 - intergenic NA chr18 68157493 - intergenic ? 13 13 93 139 0.000 0.000 588 318 0.480 0.250 121 122 26 28 CGGGGGTGGGAGGGCGAAATAAAGAGCCAGTTCAGCATGGGTAGGGAGGCCTCAGGAAACTTTCAATCATGGTGAAAGAGGAAGCAAACACATCCTTCACATGGCAGCAGCAAGAAGTGCCTCTTTCTCAATCTTACCGCCCCTCCTCCATGTCCCACAGCCTCTCCGTGCTTTCACTTCCCAGTTCTGCTGCAATCTTTCAGCTTGTATCTTCTCATTGGAACTGTGAGCTCATCCAGCAGAGATATGTGTCACTCCT read_through 45.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 105000528 + intergenic NA chr1 105010556 + intergenic ? 10 10 105 126 0.000 0.000 537 363 0.770 0.530 105 105 12 18 CTCCATGATTGTGAAGCCTCCTCAGCCATGTGGAACTGTAAGTCCATTAAACCTCTTTTTCTTCCCAGTCTCAGGTATGTCTTTATCAGCAGCATGAAAATGGACGTGTTCCAGATGTCCAGACTCTAAGCACCAATTCTTCCCAGTGTTCAGCTGCTGTGTTAATCCTCTGCGGGGGTCTGCCGCACACTCCTCTGGCAAGGCATTCCAGGGAGGCAATTGCCTATGCT read_through 45.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr18 68132275 + intergenic NA chr18 68157291 + intergenic ? 7 7 108 110 0.000 0.000 390 510 0.640 0.320 108 108 10 21 CTGAAGCCTGCAGGGGTGCCTCCTCTGCCGGATCTGGCCAAGCCTCCTGCCAGTCGAGGCCCTTTACCTTCCAGTCACACCAAGAACTAAAACAGGATCAGCCAAAGCTTTTGAAGAAACCCAAACTGGACAGACAGTTACTGAATTTTTGTAATGTCCGAGGCTTCCAGGAGGAGTGACACATATCTCTGCTGGATGAGCTCACAGTTCCAATGAG read_through 45.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 LPPR2 chr19 11478850 - intergenic TMEM205 chr19 11453796 - coding > 6 6 82 215 0.000 0.000 265 185 0.110 0.020 82 82 52 883 GCATCATCACGGCTCGCGACAGTCTCGACTTCCTGGGCTCAAGGGACTCCCATCTCAGCCTCCTGCATAGCCGGGACTACAGCTTTACCTGCTGTTCCTGAGCCTTACGCTGGCCACTGTCAACGCCCGCTGGCTGGAACCCCGCACCACAGCTGCCATGTGGGCCCTGCAAACCGTGGAGAAGGAGCGAGGCCTGGGTGGGGAGGTACCAGGCAGCCACCAGGGTCCCGATCCCTACCGCCAGCTGCGAGAGAAGGACCCCAAGTACAGTGCTCTCCGCCAGAATTTCTTCCGCT read_through 45.00 RT 0 NLoss 3,3,3 ,, ,, ,, ,, ,, ,, ,, NM_001145416,NM_033408,NM_198536 89,89,89 ,, tuple,tuple,tuple 265,265,265 570,570,570 ,, ,, ,, ;; geneA_no_transcript_IDs_found geneB_transcripts=NM_001145416,NM_033408,NM_198536 ,, ,, MV4_11_RNAseq_1 CELF1 chr11 47573985 + intron PTPMT1 chr11 47587458 + coding > 9 9 119 46 0.000 0.000 152 448 0.240 0.050 119 119 28 538 CAACCACGACACCACTGGCTTTAAAATCAAAGCCTGGTCCCTAGCGAAGAAAGCGCTTTAATGTGCTCCTCCCGCTCCCGGGTGCGAGATTCCTGCCCAGCTACTAGGCCACGACTGGCTGGTACAGGACGAGAACGTGCGCGGGGTGATCACCATGAACGAGG read_through 44.80 RT 0 NLoss 0,0,3,0 NM_006560,NM_006560,, ,,, 1,1,, ,,, ,,, ,,, ,,, NM_001143984,NM_175732,NM_001143984,NM_175732 95,59,95,59 1,2,, tuple,tuple,tuple,tuple 284,175,284,175 456,606,456,606 39,39,, ,,, QPRHHWL*NQSLVPSEESALMCSSRSRVRDSCPATRPRLAGTGRERARGDHHER,NHDTTGFKIKAWSLAKKAL*CAPPAPGCEIPAQLLGHDWLVQDENVRGVITMNE,, CELF1:NM_006560[1,1]-PTPMT1:NM_001143984[1,2];CELF1:NM_006560[1,1]-PTPMT1:NM_175732[2,4];; geneB_transcripts=NM_001143984,NM_175732 ,,, 0,1,, MV4_11_RNAseq_1 BACH1-IT2 chr21 30783944 + intergenic NA chr21 30816574 + intergenic > 5 5 105 56 0.000 0.000 194 406 0.560 0.560 108 108 8 8 GCTGGCCACGATGAAAAGACTCCTGGAAAACCATGAGGTGGCCCTCCCAAACCCTAAGATTGGAATGTGGTTTTCCTAGGGAAAGAAGACTCATGAGCTGTCTGGAGGAAAAGAAGTCATTATACAAAAAAGATACTTGCACACACATGTTTATAGCAGCACA read_through 40.60 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr5 49909886 - intergenic NA chr5 49876350 - intergenic ? 0 20 101 143 0.000 0.000 0 810 0.000 0.300 101 101 160 66 TGTTGTCCACTCTGGAGTGCAGTGGCTATTCACAGGCTTGATCATTGCATACTACAGTCTTGAACTCCTGGACTCAAGTCTCCCAGTGGCTGGGACTACAGGAGCTAGTTTGAGGCACTAAGAAGAATAAAATATCAGATTAAAAACAGTCCCTATTTGACTATATCCAGAATCTACAAGGAACTCAAACAAATCATCAAGAAAAAAACAAACAATCCCATCAAAAAGTGGGCTAAGAACATGG read_through 40.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 RAB18 chr10 27798859 + coding NA chr10 27872796 + intergenic > 6 3 60 111 0.000 0.000 390 78 0.030 0.430 67 67 448 6 GCAAGTCCAGCCTGCTCTTGAGGTTCACAGATGATACGTTTGATCCAGAACTTGCAGCAACAATAGAGCCTTTGATGGGAATTCAGCCCAGCTGACACCTTGATGTCCACCTTGTGATACCTTGGGAAGAATCCCTGCCCCACCATGCTGAACTTTTGATCTACAAAACTGTGAGCT read_through 39.00 RT 0 CLoss ,,,, NM_001256410,NM_001256411,NM_001256412,NM_001256415,NM_021252 ,,,, ,,,, ,,,, 124,124,124,114,124 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, MV4_11_RNAseq_1 SDHAF2 chr11 61205585 + coding PPP1R32 chr11 61236108 + intergenic > 9 9 309 53 0.000 0.000 210 390 0.020 0.100 309 309 945 86 ATTGTCTCCTTTGCTCAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGATTCCCAAAAGGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCCTGCTCTATGAGAGCAGAAAGAGGGGAATGTTGGAAAACTGCATTCTTCTTAGTCTTTTTGCTAAAGAACATCTGCAGCACATGACAGAAAAGCAGCTGAACCTCTATGACCGCCTGATTAACGAGCCTAGTAATGACTGGGATATTTACTACTGGGCCACAGGGCCTGTCCTGTGTGCTTCTTGAATCAGGGAGAAGGTTTTATACAAGAAAATG read_through 39.00 RT 0 CLoss 0,0 NM_017841,NM_017841 , , , 370,370 , , NM_145017,NM_001170753 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 NA chr13 105457969 + intergenic NA chr13 105476014 + intergenic ? 6 5 132 207 0.000 0.000 388 381 0.860 0.830 132 132 6 5 AGTTGGGTTCAGTAAGGGTCTGGCCAATCGGGTCACTCACAGTCTCTCAATCATCACAGAATTAGTTGGTTAGGATGGCTGCTGTGAAACCCGGCTTCCTGTTATCTCCTAGGCAGTGCTGCTCACTGATGTGTAACATTTGGTGAGAAGGAGGTAAAATGATCCTTGATAGGATAAGAGATCATTCTCATTGATTTCTCTGGGAAGCAGATGCTGAGACGGAAGCCAGCACTAAAAGTTCACTGTGGTGTAACACCTTATGAGTGCTGAAACAAGAAGACAGACTGCCCCAGTTCAGTCTCTGTGGGAAATGTTTATGCCTGGCGACCGAAATTTTT read_through 38.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 PDE3B chr11 14882912 + coding CYP2R1 chr11 14907352 + coding ? 7 7 131 106 0.000 0.000 406 344 0.030 0.150 131 131 278 9 GAGTAATGAAAATGATCGCCTCTTGGTATGCCAGGTGTGCATCAAACTGGCAGATATAAATGGCCCAGCAAAAGTTCGAGACTTGCATTTGAAATGGACAGAAGGCATTGTCAATGAATTTTATGAGCAGGAAGGCATGGTCTGTCTGCAAAAATTTCGCTTTGATGAACAAGGCATTCCTTTACTACATCATAGCCATTTAGAACCACAGTTGATATGCCTCCAAGATCTAAACT read_through 37.50 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr14 99542331 - intergenic NA chr14 99522796 - intergenic ? 5 5 101 86 0.000 0.000 322 428 0.420 0.420 101 101 11 11 GAGAGATAAGAGCAGCCTCCATGAAGATGTGATGCTTGATCTGAGACTTGCAGGGTCGGCAGCTCCTTGGCCAACAGAAGGGAGAGTGGGAAAAGGGAGAGTTCATCTGTAAATTGATGAATGAATGCTTGGCATAGACTGATGAGAAAAAAAATACACCAGGACTTGGTTCAAGCCTTCCTGGGA read_through 37.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 102272635 - intergenic NA chrX 102251992 - intergenic ? 8 8 94 81 0.000 0.000 368 382 0.420 0.360 94 94 18 21 ACAACCCCTCCACCTTTCTGCTCAGCGATGTTTAAACTGCAGTTCAGGCTTCTGTCACAAGGCGACATCAACGTACCAGTATTATCAAACTTCTCTTCTCAAAGCAGTGAATCCCAGGAGGTACCATAATGAAGTTTCAGAGCACTTTCTACCGTTCTAGAGGCAGTGACTTCT read_through 37.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chrX 36982438 + intergenic FAM47C chrX 37003172 + intergenic > 9 9 97 70 0.000 0.000 248 352 0.270 0.270 97 97 32 32 TCTTGCTTCTTTGAATGTGCAGACGACTTCTGTGTACTCGCCCTCAATCTTGGCTAGCATTTTAATACTGAATTGGCTTTTTTCCTGTGAAGAAAACTCCACATCGGCCCCGAAAAGTTCCATTACTTTCTAGCACTCTTAACATTCGAGGGTGCCTCAGCTTTTG read_through 37.24 RT 0 other 0 NM_001013736 geneB_no_transcripts MV4_11_RNAseq_1 AZU1 chr19 834620 + intergenic PRTN3 chr19 843461 + coding > 2 33 281 487 0.000 0.000 82 370 0.000 0.080 281 281 653 3772 CGTCCTCTTCCTGTCTCTGTGGATGGGCTTGTCCTGGACATTTCATAGCAATGGGATCACACACTGTGTGGTCTTTCGTGTCCGGCGTCTCTCACGGAGCGTGACGTCCTCACGGTGCCTCCGCGCCGTGGTCGGGTCACAGCTGGGTCCGTTTCACGGCTGCGTCCTGTTGCCACGCCTGGAGGCCTCACTGTGCTGCTCGAGGCCCCTGTGGATGGACGTCTGAGCCTCTCCACTTCCGGCCACTGTGACCCTCACTGCTGTGGACACTCATGTGCAGGTGCTGCCCGAGCTGCGGAGATCGTGGGCGGGCACGAGGCGCAGCCACACTCCCGGCCCTACATGGCCTCCCTGCAGATGCGGGGGAACCCGGGCAGCCACTTCTGCGGAGGCACCTTGATCCACCCCAGCTTCGTGCTGACGGCCGCGCACTGCCTGCGGGACATACCCCAGCGCCTGGTGAACGTGGTGCTCGGAGCCCACAACGTGCGGACGCAGGAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTACGACGCGGAGAACAAACTGAACGACGTTCTCCTCATCCAGCTGAGCAGCCCAGCCAACCTCAGTGCCTCCGTCGCCACAGTCCAGCTGCCACAGCAGGACCAGCCAGTGCCCCACGGCACCCAGTGCCTGGCCATGGGCTGGGGCCGCGTGGGTGCCCACGACCCCCCAGCCCAGGTCCTGCAGGAGCTCAATGTCACCGTGGTCACCTTCTTCTGCCG read_through 37.00 RT 0 NLoss 3 NM_002777 21 tuple 62 771 geneA_no_transcript_IDs_found geneB_transcripts=NM_002777 MV4_11_RNAseq_1 NA chr21 25801218 + intergenic NA chr21 25814109 + intergenic ? 8 7 143 77 0.000 0.000 324 401 0.360 0.640 143 143 21 10 TGGAAAATGAACTTGCCAGTTCACAGCTATGTCCTTCCCAATTTAGGAGGTTAAGGGCAGGAAAAACATGAGAAACTCTTTTGAGAAGCTGCACAAGCTGACATGGAGGATCAAGGATTTCAAAAGCTTTGAATATAAAGAGACTCTAGACAGCTTATACGTATTTGGACAAGGCAACGTGATGAAGAAATAATATAATTGTAGGATCACCTCTGTCCA read_through 36.25 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 MBNL1-AS1 chr3 151962230 + intergenic MBNL1 chr3 152017194 + 5utr > 0 5 83 297 0.000 0.000 1 360 0.010 0.260 84 84 0 113 NGCAGAGAACTGAGCTCTTTGAAGTGCTGGTAGTTTGTCTCAACCCATGAAGCAGCTTAACAAGCAACTATTAAAGCATAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGCAGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAGACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTAAAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCGATTTTGCTCTAAACTGCC read_through 36.10 RT 2 other 0,0,0,0,0,0,0 ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, ,,,,,, NM_021038,NM_207292,NM_207293,NM_207294,NM_207295,NM_207296,NM_207297 -262,-262,-262,-262,-262,-262,-262 ,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,, 1149,1113,1167,909,945,1023,1029 ,,,,,, ,,,,,, ,,,,,, ;;;;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_021038,NM_207292,NM_207293,NM_207294,NM_207295,NM_207296,NM_207297;geneb_utr_codons=13 ,,,,,, ,,,,,, MV4_11_RNAseq_1 NA chr5 49876350 + intergenic PARP8 chr5 49935089 + intergenic > 0 4 103 71 0.000 0.000 0 361 0.000 0.180 103 103 66 240 TTCTTGATGATTTGTTTGAGTTCCTTGTAGATTCTGGATATAGTCAAATAGGGACTGTTTTTAATCTGATATTTTATTCTTCTTAGTGCCTCAAACTAGCTCCTGGTTTTAAGGAATGAATGGCCATGTCAACTATTGGAAGCATCTTTGAATTGGAGCCTCTATGTTCAGGT read_through 36.10 RT 0 other 0 NM_001178055 geneB_no_transcripts MV4_11_RNAseq_1 PEX1 chr7 92120557 - intron GATAD1 chr7 92092340 - intergenic > 9 9 90 67 0.000 0.000 240 350 0.210 0.640 91 91 60 13 CCCGGCTCTACTTTGGAAGCTCTTATGAATCAGAACTTGGAAATGGAACCTCTTCTGATTTGGTATCTTGTGCAGTCATCATTATACAGTTCACGTTTTGATCATCCATTCGTCTGCTGATGGGTCCTTGTGTTGTTTCTATCTCTGTCAGCTTGGG read_through 35.44 RT 2 other 0,0,0 NM_000466,NM_001282677,NM_001282678 ,, ,, ,, 3438,3267,2814 ,, ,, NM_021167,NM_021167,NM_021167 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, MV4_11_RNAseq_1 SPN chr16 29674637 + 5utr QPRT chr16 29705985 + coding > 10 10 57 120 0.000 0.000 331 119 0.040 0.130 57 57 691 404 CTCGGGAGGTGGTGGAGTGACCTGGCCCCAGTGCTGCGTCCTTATCAGCCGAGCCGGCCTGGCGCTGCTGCTGCCGCCCGTCACCCTGGCAGCCCTGGTGGACAGCTGGCTCCGAGAGGACTGCCCAGGGCTCAACTACGCAGCCTTGGTCAGCGGGGCAGGCCCCTCGCAGGCGG read_through 33.10 RT 0 NLoss 0,0,0 NM_001030288,NM_003123, ,, 1,1, ,, ,, ,, ,, NM_014298,NM_014298,NM_014298 5,5,5 2,2, tuple,tuple,tuple ,, ,, 18,18, ,, SGGGGVTWPQCCVLISRAGLALLLPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQA,SGGGGVTWPQCCVLISRAGLALLLPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQA, SPN:NM_001030288[1,1]-QPRT:NM_014298[2,4];SPN:NM_003123[1,1]-QPRT:NM_014298[2,4]; geneB_CDS_mapping_exception=NM_014298:-2 geneB_transcripts=NM_014298 ,, 1,1, MV4_11_RNAseq_1 ZC3H12B chrX 64719039 + coding LAS1L chrX 64737867 + coding ? 8 8 119 144 0.000 0.000 262 373 1.000 0.030 119 119 11 523 CTTCACACCATCCCGAAGAGTCCAAGGCAGGAGGGTTGTCTGCTATGATGACCGGTTCATAGTCAAACTGGCTTTTGATTCTGATGGCATCATTGTGTCCAATGATAACTACCGAGACCTGAGCTAACCTGCCATGCAGAGCCCTGCAAAGCTCCTCTTTTCTGGGCCAGAAGCCTAGCATTCTCGGCAGTGGGGGACTCTTGCCCTGTAGAGAAAGGCCCCACCTCCATTCTGTCTTCCTCTTCATCATCTTCATCATCTT read_through 31.75 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 LOC339622 chr21 26453344 + intergenic NA chr21 26509213 + intergenic > 6 0 103 94 0.000 0.000 310 0 0.160 0.000 103 103 37 32 TTGGGGTTTCACCATGTAGTCAGTCATGTAGTCATGATTGGCTGAGTCATTGGCCATGTCATTGAACTTGATCTCCTGTCCCTTGTCATCTCCTCAGAAGATAGTTCCGCAGGCTGTACAGGAAGCATGACTGGGGAGGCCTCAGGAAACTTACAATCATAGCAGAAGGCCAAGGGGAAGCAGGCTCTTACATGCTAGTTTTTCCTCCT read_through 31.00 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr3 18568818 + intergenic NA chr3 18633127 + intergenic ? 6 8 147 131 0.000 0.000 324 288 0.050 0.300 147 147 128 26 AAGCCTGAACTTTCTCATCCAACACCCGTTCAAGTCGGAGGATGCTGATTAATTCATGATGGAAAGGTATCAATTTCACAGCCCAGACCTCTACATTCTTGAAATGCTCTTCTCATGGGAGACATTAAATAAGCTTTGAATTAACTGGACTTATCTTCCTCAGTTCTCTGTGATGAACTTTTGTAGAGCCATACGAAAGGAGGTTTTTAGCTCTCACCTGTGGTCTTTCTTCATCATGCACCTCCTAGATTCAAAAGTTCAGCAGGGACATGTCAAG read_through 30.60 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 C12orf49 chr12 117115551 - intergenic NA chr12 117100051 - intergenic > 6 6 40 147 0.000 0.000 301 78 0.020 0.180 40 40 392 432 CATATACCTTTGTAACAAACCTGCACGTGTACCCCTGATTCTGGCTCCTGTGCTCACAGCGCAGCACCCCTTACCCGTCAGCCTCTTAGCGAGCTCTGCTGCACCTCAGAATCCTCCTTAACCCAGCTCTTCAGGAAGCCACCGCTGGTGAGTTGGGGTCTGCGCTGAAGAGGGAGAGCTGGTGAT read_through 30.10 RT 0 other 0 NM_024738 geneB_no_transcripts MV4_11_RNAseq_1 NA chr1 192926434 - intergenic NA chr1 192905033 - intergenic ? 8 8 111 84 0.000 0.000 244 356 0.570 0.450 111 111 13 17 CTAAATATCCTACAGTGCACAGAACGGCCACCAACGACCAAGAATTATCCAGTCCAAAATGTCAGTAAAGCTGAGGTTAAGAAATCCTGTTCCAGAATATCACATTTTTTGGATGCTGTGGTACCTGGAGTGATGCCAGACTGCAGAGGCCACCTGGTGACATGAGGAGAGATTCAACTTAACATGGTGAGGAT read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr11 27945942 - intergenic NA chr11 27879463 - intergenic ? 5 5 109 99 0.000 0.000 278 322 0.630 0.830 109 109 7 5 GTGAAGTGCTGGCTTCCCTTTGCCTTCCACCATGATTGTAAGTTTCCTGAGACATCCCCAGATGCCAAGCAGATGCCACCATCACATTTCCTGTACAGCCTGTGGAACTATGTTGATGACCAGAATAACACCTGCTCCACCGAAGTCTCAGAGCAGCAGTGGGAATCACGTGACACAGTCATTCACTCAGCAAGTGTGTGTGGAGTG read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 CERS5 chr12 50523310 - 3utr COX14 chr12 50506084 - 5utr ? 6 6 110 241 0.000 0.000 342 258 0.080 0.020 110 110 18 2007 TTTATGTTTTTTAAGAAAAAGAAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGCGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCTGTCTGGATGCTGCAGCTCCTTCGCATCCAACCGAGGCCTCCTCAGGCAGGCAGGGTCTCGAGGCCACTGTCTACGCAACTTCCCAGCACAGCCGAACGCAGCACTCGGAACCAGACACGTGAGGGTAGCGTCCCTGGACAACCCTGAACGCCTCAGCTATTGGTGCAGAAAGCAACTTTCTCCCTCCCACCTGCCGGGTTAGCCTCTAGGATTCGGCTTGCCGCGCTATAAAGGGAACTGCG read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 GTF2A1 chr14 81631537 - intergenic TSHR chr14 81620475 - intergenic ? 8 8 174 137 0.000 0.000 234 366 0.730 0.620 174 174 10 12 CCTGGAATAACGTTGCTTTGGATTTAACAACAGTTGGGCAAAGGAGGTCGGTATACAGATACAGGACAAGAAGAGTGGTGTCAAAGGGAGGCTAAATCATTGGTTCTGGCTTCATCTAAGGAATTCTTATGAGAAATCGAGGGAGAGACTGTCCTGGGAAGTCTGATGAAACATAAATGGGGTTTTGCCATGTCGCCTAGGCTGGTTTCAAACTCCTGGACTCAAGCGATCTGCCCGCCGCAGCCTTCTAAAGTGCTGGGATTACAGGTTTGGCCTGCAGATGATGAAAACAGGTATGAGGTCAGGCATCN read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 TMEM17 chr2 62690974 - intergenic NA chr2 62642564 - intergenic > 5 5 89 144 0.000 0.000 124 176 0.280 0.250 89 89 17 19 CAAGCTGCACCTCTGAAGTTAAGCTGCTTCTCTCTGACGTCCAGCCATAGTCCTGATGTCCCGCTGCTTCTCCTCTCTGCCAGCTGAGTCTGCACACAGGCCCAGGTACAGGCTCAGCCAGAAGAGGAATCTCCCAGGAGGGCCTCTCCCCAGGCCCAGGCAGGGAAGCACTGCCATGGATAGCATCTGCCAGGACAAGCTGACAGTTGCACATGGCTGGGGAGGCCTCACA read_through 30.00 RT 0 other 0 NM_198276 geneB_no_transcripts MV4_11_RNAseq_1 EMC3 chr3 10011403 - coding PRRT3 chr3 9990597 - coding > 6 6 148 83 0.000 0.000 164 136 0.010 1.000 148 148 1020 12 CTGGTACTTCCTCAATGTATTTGGGCTTCGGAGCATTTACTCTCTGATTCTGGGCCAAGATAATGCCGCTGACCAATCACGAATGATGCAGGAGCAGATGACGGGAGCAGCCATGGCCATGCCCGCAGACACAAACAAAGCTTTCAAGAGAGAGCAGCAATGAATGGAGCAGACCCCATCTCCCCCCAGCGGGTGAGAGGAGCTGTGGAGGCCCCAGGCACCCCCAAGTC read_through 30.00 RT 0 Fusion 0,3 NM_018447, , 7, , 657, , , NM_207351,NM_207351 339,339 3, tuple,tuple 1016,1016 2946,2946 49, , LVLPQCIWASEHLLSDSGPR*CR*PITNDAGADDGSSHGHARRHKQSFQERAAMNGADPISPQRVRGAVEAPGTPK, EMC3:NM_018447[1,7]-PRRT3:NM_207351[3,4]; geneB_transcripts=NM_207351 , 0, MV4_11_RNAseq_1 SATB1 chr3 18351731 - intergenic LOC339862 chr3 18327402 - intergenic ? 6 6 112 106 0.000 0.000 344 256 0.020 0.020 112 112 253 268 AGTTCTGTTTATGTTCTGTGAAGGCAGATAGTTTCTGGGGGAGGTAAGGAAGTGTGAAAAAGTCTGCCATCTATGCTCCTGAAGCCACCAGTCTCTGATGTGTCATGACAGACATCAACATGGTAGAGCATCAACTCAAGTTTGTAGAATGAGCTGGTCTTTTTCCTCAAATCCTGGCTCCACTTGATCATAGTCCTTCTATTCAAAGAGTTCACAC read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 PIGZ chr3 196678692 - coding NCBP2 chr3 196666303 - coding > 6 6 93 145 0.000 0.000 114 186 0.610 0.020 93 93 14 392 GTCTCAGCCTGCTCCGAGTGCTGTGGTGTCTCCTTCCGCAGACGGGCTATGTGCACCCAGATGAGTTCTTCCAGTCCCCTGAGGTGATGGCAGGGTGACAATGAAGAACAAGAAAAATTACTGAAGAAAAGCTGTACGTTATATGTTGGAAATCTTTCTTTTTACACAACTGAAGAACAAATCTATGAACTCTTCAGCAAAAGTGGTGACATAAAGAAAATCATTATGGGTCTGGAT read_through 30.00 RT 0 Fusion 0,0,0,0 NM_025163,NM_025163,, ,,, 2,2,, ,,, 211,211,, ,,, ,,, NM_001042540,NM_007362,NM_001042540,NM_007362 27,27,27,27 2,2,, tuple,tuple,tuple,tuple 79,79,79,79 312,471,312,471 31,31,, ,,, VSACSECCGVSFRRRAMCTQMSSSSPLR*WQGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD,VSACSECCGVSFRRRAMCTQMSSSSPLR*WQGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD,, PIGZ:NM_025163[1,2]-NCBP2:NM_001042540[2,4];PIGZ:NM_025163[1,2]-NCBP2:NM_007362[2,4];; geneB_transcripts=NM_001042540,NM_007362 ,,, 0,0,, MV4_11_RNAseq_1 NA chr4 55668528 - intergenic NA chr4 55656002 - intergenic ? 5 5 105 265 0.000 0.000 270 330 0.090 0.120 105 105 53 41 GTTCTTTTATGATTTTTTAATTAAGGAAAAAAGTGTTTTGCTTAGAATATATACATCTACATATTTGAAAGAAAATACACCAAAATGTCAAGTGTTCATTTTGAGGCAAAGGATCTAAATAGAAAACATTAAAGAAGTCTCACTCCGATGAATGAGGCCGAGCCTGCAGCTCAAGGAAACCCTGGAGACTGCATAGGGTGTTGGAAGAAAGAATCTCAGAAGAAAGAAATCTTCCCATGAAGAGAGAACATCAATTTCCAAGCCAGCAAGGGCGAGCTGGGGCCTCAGGAAGGAGGGGTGGGGTGGAGAGTGAACAGATCCACACACTGGTAAGGTAGATGAATAAGAGAGAAACACCTAAAGCTTGCC read_through 30.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SCLT1 chr4 129809834 - coding JADE1 chr4 129795621 - 3utr > 11 11 93 143 0.000 0.000 114 186 0.090 0.230 93 93 113 103 GAAAAGCTAATTCTAGAGCATCAAGAAAAAGCCAACAGACTTCAAAGGCGTCTAAGTCAGGCAGAAGAGAGAGCTGCTTCAGCTTCCCAGCAGCATAACTTGGAACATTTGAAAGCTTTTCAACCTAAATGTGGGGAAAAAACAGGGCTAACTCCATGCAGAACTCATCAGGTGGCTGATGGCTGCCTCTGCTCCCTCTACCTGGTTACAGAGCAGCACCTGCGCCGCGCTCCTC read_through 30.00 RT 0 CLoss ,,,,, NM_144643,NM_144643,NM_144643,NM_144643,NM_144643,NM_144643 ,,,,, ,,,,, ,,,,, 2004,2004,2004,2004,2004,2004 ,,,,, ,,,,, NM_001287437,NM_001287439,NM_001287440,NM_001287442,NM_001287443,NM_199320 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001287437,NM_001287439,NM_001287440,NM_001287442,NM_001287443,NM_199320;geneB_transcript_strand_disagree=NM_001287437;geneb_utr_codons=13;geneB_transcript_strand_disagree=NM_001287439;geneB_transcript_strand_disagree=NM_001287440;geneB_transcript_strand_disagree=NM_001287442;geneB_transcript_strand_disagree=NM_001287443;geneB_transcript_strand_disagree=NM_199320 ,,,,, ,,,,, MV4_11_RNAseq_1 SLC36A1 chr5 150859050 + coding FAT2,MIR6499 chr5 150891849 + coding ? 9 9 89 98 0.000 0.000 316 284 0.630 1.000 89 89 20 9 ATCATCCCCTTCTTTGTGTCCCGAGCGCCCGAGCACTGTGAGTTAGTGGTGGACCTGTTTGTGCGCACAGTGCTGGTCTGCCTGACATGGGCCAGCAGATCTAGAGCCTCTTCGTTGACCACGACAGCATCCAGGCAGCCTTCAAAGCCCTGGGAGACATTCGAGGAAGAATGCAACAGAATGAGG read_through 30.00 RT 0 Fusion unhandled orientation ? MV4_11_RNAseq_1 NA chr4 55697968 - intergenic NA chr4 55668808 - intergenic ? 0 11 132 95 0.000 0.000 0 556 0.000 0.220 132 132 77 49 GCAAAAGCCATTTTGTAGCTCACACACTTCGTTGCTGATCTGCAAACTCACCTTGGAATAAAGCAGAGCTGGGCCTCAATTATTCCCCTTTTCTCCTGGATCTTCCTTCAGTGTCACTGACTCCTGGACCAGGTGATGCTGATGCACAGTTGAGGGGTGTGAAAAATCAAGCAAAACTCTCCGTGAATGCTGAATGACAACCACAAGCTCTGTTTGTTGAGGATCT read_through 27.80 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 EVI5 chr1 92981753 - intron GFI1 chr1 92948603 - intron > 5 5 147 69 0.000 0.000 136 245 0.360 0.010 147 147 16 379 GTTTTAATTGCAATAAATTTTGTTAGAGCAAAGGAAAGCTGCAGCTTTCCAAACAGTTGGGAAGTTGTGGTTCTTCTGCCATACTCCTCCTTTATAACAGCCAGGAAGAAGGAAGACACATGTTCCATATGATTTCTTCAAAAAGGTCTCCTCTTTGCAGACAGCACTTCAAATGCAGGCGGGGCGAAGGCGGAGCCCCGGGACCGTTTGTCCCC read_through 25.18 RT 0 other 0,0,0,0,0,0 NM_005665,NM_005665,NM_005665,,, ,,,,, 17,17,17,,, ,,,,, 2119,2119,2119,,, ,,,,, ,,,,, NM_001127215,NM_001127216,NM_005263,NM_001127215,NM_001127216,NM_005263 39,39,39,39,39,39 3,3,3,,, tuple,tuple,tuple,tuple,tuple,tuple 116,116,116,116,116,116 1269,1269,1269,1269,1269,1269 53,53,53,,, ,,,,, VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,VLIAINFVRAKESCSFPNSWEVVVLLPYSSFITARKKEDTCSI*FLQKGLLFADSTSNAGGAKAEPRDRLS,,, EVI5:NM_005665[1,17]-GFI1:NM_001127215[3,7];EVI5:NM_005665[1,17]-GFI1:NM_001127216[3,7];EVI5:NM_005665[1,17]-GFI1:NM_005263[3,7];;; geneB_transcripts=NM_001127215,NM_001127216,NM_005263 ,,,,, 0,0,0,,, MV4_11_RNAseq_1 PTRH1 chr9 130476658 - coding STXBP1 chr9 130457420 - intergenic > 5 5 146 25 0.000 0.000 50 250 0.050 0.260 146 146 253 18 CGGAGCTGTTTGGGCTGACTGCCGAGGAAGTCTACCTGGTGCATGATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAGTGCCAGGGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAATGCTTGGCTTGGACTCATCGTCAAC read_through 25.00 RT 0 CLoss 0,0 NM_001002913,NM_001002913 , , , 462,462 , , NM_003165,NM_001032221 , , , , , , , , ; geneB_no_transcripts , , MV4_11_RNAseq_1 LOC100131564 chr1 93790192 - 3utr CCDC18 chr1 93739185 - intron > 6 6 141 26 0.000 0.000 52 248 0.110 0.050 141 141 76 137 GACGTGGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCACCATGCTGGGAGATAAGGATCCAACATAAGACAAACAGTGCTGATGCTTTTGGAAAGCTCATATTCAAGCTGGGGAGACAAACAACATACAAGGGAGAAAGGGACATGCTGCTGCTG read_through 24.80 RT 0 other NM_206886 geneB_no_inframe_contig_found geneB_transcripts=NM_206886;geneB_transcript_strand_disagree=NM_206886;geneb_utr_codons=5 MV4_11_RNAseq_1 NA chr1 103721789 + intergenic NA chr1 103742242 + intergenic ? 6 7 29 180 0.000 0.000 486 114 0.860 0.880 29 29 6 7 CATTTTTACTTTGAGATTCTTCATGAATCTTTCTTCATTGAGTTTTTTGTAGGGCATGAGAAAGACGATATTCCACACCTTAGTTCTCCACTAATTGTGCATGACATAGCAGCAATCCAGAATTCCTCATGAGTCCCACTGCCACACAAGCAAAACCCAAGGTAAGGCCAAGTTTACTGCTAAGTGTTTCTTCTTCACAGAACATAAT read_through 24.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 ANKRD18DP chr3 197790589 - 3utr LMLN chr3 197757927 - intron > 9 9 142 74 0.000 0.000 146 154 0.220 0.430 142 142 78 70 ATAAAGATTATAGTCTTTATCTAAGTGTTCTAAGTCATTCATTTTAACTAAACATATGGATTTGTCAAAAGAACACGACTTAAAAGTGGCTTCAGAGGAAAAGCAAGAAACGCTTGAAAGAAGTGAAAATAAACAGCCAGAGGCCTAGCTGAGGACCCTGAGGGCAGAGGTGAGGTCCCGCCTTCCCACGCTGTCAGCAGGCGTCACGGTGGAAA read_through 24.26 RT 0 other , , , , , , , , NM_001136049,NM_033029 , , , , , , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001136049,NM_033029;geneB_transcript_strand_disagree=NM_001136049;geneB_transcript_strand_disagree=NM_033029 , , MV4_11_RNAseq_1 TDG chr12 104359294 - intergenic C12orf73 chr12 104350527 - 5utr > 1 2 166 41 0.000 0.000 22 119 0.030 0.250 166 166 29 254 CCGACGTCAGCTTTTGTCTCCAGTATTTTCGGGGGCTGGTGGACGCGTGGGCGATAGGGTGCTGTCCTTGGGGTGCTGTGTATATGGGATGATGACGCTTATCAGCATTATCTAGTCCTTTCCACCCCGAAATTCGCCCCGATTAAAGACTGTGTTGCATTATCAGCCTGCCGACCATGCCCGCGGGCGTGCCCATGTCCACCTAC read_through 23.80 RT 0 upTSS 2 NM_001135570 -3 tuple 216 geneA_no_transcript_IDs_found geneB_transcripts=NM_001135570;geneb_utr_codons=4 MV4_11_RNAseq_1 NA chr6 159542282 - intergenic NA chr6 159527666 - intergenic ? 0 22 121 137 0.000 0.000 0 468 0.000 0.270 121 121 81 81 GTGATCCTGAGACTCTAAGCTCAGCTCCTGGCCCTCTTGGAGTGGCACCACCATGCCTGGTCCCCAGCCTCCCAGAGCACCCAAGGGGGAAAGCTGTGGTGTCCCTGCTACAAAGCACAGGTTCAATCATCCAGCTTTGTCCTGGACCTGGTCTGGGCGCACCGTGCTGGAGAGAGACCTGGCCCAGCCCACCAGCACGGCTTCTTCAGAGGACCTTTCTGGTCTACCTGATTCACCACAGCTTGATCATTTGCAGC read_through 23.40 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 ATAD3C chr1 1391729 + coding ATAD3B chr1 1422575 + intron > 4 4 145 39 0.000 0.000 76 224 0.670 0.020 146 146 167 261 TGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGAAGACCTGTCCCTGCGCCAGGCGTGGTGGCTCACGGCTG read_through 22.40 RT 0 CLoss NM_001039211 689 NM_031921 1214 1947 geneB_no_inframe_contig_found geneB_transcripts=NM_031921 MV4_11_RNAseq_1 DCLRE1C chr10 14996303 + 5utr MEIG1 chr10 15008439 + 5utr ? 6 6 54 128 0.000 0.000 446 154 0.110 0.590 54 54 33 24 GCCCTGCCCAGTGCAAGGCTCATTCCCGCCCAACAAACACAGGTGTTGCTCTGATATTATTGATAATAAGGCCTCTGTAACCATGGCTAGTTCTGACGTAAAACCAACATCAGTAAGTCATGCCAAAAAATGGTCAGAAGAGATAGAAAATCTATACAGAGTTCAACAAGCAGGATATCGG read_through 22.30 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 R3HDM1 chr2 136490149 + intergenic UBXN4 chr2 136505837 + coding > 5 5 43 144 0.000 0.000 216 84 0.630 0.010 43 43 7 208 TGCGCTCTTCCCCAGGATGTGATGGAAGCCAGTACCCAACAGGTGATGATGAACAGTCTACACAGATGGCTGCAAGTTGGGAAGATGATAAAGTTACAGAAGCATCTTCAAACAGTTTTGTTGCTATTAAAATCGATACCAAAAGTGAAGCCTGCCTACAGTTTTCACAAATCTGTATCCTTTCAG read_through 21.60 RT 0 NLoss 3 NM_014607 28 tuple 83 1527 geneA_no_transcript_IDs_found geneB_transcripts=NM_014607 MV4_11_RNAseq_1 NA chr2 140169138 + intergenic NA chr2 140184221 + intergenic ? 12 12 72 109 0.000 0.000 382 218 0.330 0.390 72 72 35 30 ATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGAATACCTGAAACTAAGCAATGGATAAAGAAGAAAAACGTATTTCATGTAATTCTGGAGGCTTGGGAAATCAAGGTCAAGAGGGAACATCTGGTGAGAGCCTTCTTGCTGATATA read_through 21.53 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 MED31 chr17 6553676 - coding KIAA0753 chr17 6532061 - coding > 6 6 145 54 0.000 0.000 106 194 0.040 0.220 145 145 523 19 CTCTGTCAGGCTGGTGGCGTTTTGGTGTCTTCGTTTGTTATGGCCGCTGCTGTCGCTATGGAGACAGATGATGCTGGAAATCGACTTCGGTTTCAGTTGGAGTTGGAATTTGTGCAATGTTTAGCCAACCCAAATTACCTTAATTAACCAGCTGCAGTTTAATAGGAATGTTCCTACACATTCAAGCAACTTGGCGAT read_through 19.40 RT 0 Fusion 0,0 NM_016060, , 2, , 106, , , NM_014804,NM_014804 32,32 3, tuple,tuple 94,94 2904,2904 48, , SVRLVAFWCLRLLWPLLSLWRQMMLEIDFGFSWSWNLCNV*PTQITLINQLQFNRNVPTHSSNLA, MED31:NM_016060[1,2]-KIAA0753:NM_014804[3,19]; geneB_transcripts=NM_014804 , 1, MV4_11_RNAseq_1 NA chr4 181157121 + intergenic NA chr4 181168288 + intergenic ? 4 4 28 132 0.000 0.000 384 66 0.040 0.040 28 28 111 102 GTCTAGGAACTTTGAAGAAACATGAAGAGAACCAACTTTGCACCCACAAGAGAGAAAAAGGCAAATAAATAATATTATATTTTGGAAGAGTCTTACAAAATGATTCATAATTAATTTGCAGTATACTATTCTAAAATTCTTTTGTAAGAGATTAAAGAA read_through 19.20 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 181157062 - intergenic NA chr4 181070934 - intergenic ? 10 10 95 57 0.000 0.000 222 378 0.100 0.070 95 95 102 144 GCCTTTTTCTCTCTTGTGGGTGCAAAGTTGGTTCTCTTCATGTTTCTTCAAAGTTCCTAGACATCTTTGGTGACAGTTCTCAAGTTGGATTTTTACTTCTCTGTCTGAATTTCCCCCTGAGGTTGTATGTTTCCTTGCCATTCACAGGATC read_through 18.90 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr16 72539430 + intergenic NA chr16 72556452 + intergenic ? 12 12 93 71 0.000 0.000 288 310 0.670 0.570 93 93 17 20 CTGTAATCTCAGCACTTTGGGGCACCAAGTGGGTAGATGGCTTGAGGCCAGGAGTTCAAGACCAGCCTAGGCAACATGGCAAGACCCCATCTCTCCTGCTACCGGTTCCTAACAGGTCACAGACTGGTATTGATCCATGGCCCAGGGGTAGGAGACCCTTGACGTGGTAGTCCAATGTTC read_through 17.45 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 SLC25A11 chr17 4843526 + intergenic RNF167 chr17 4843782 + 5utr > 3 0 137 340 0.000 0.000 166 0 0.120 0.000 137 145 59 159 GCGGAGCTGAAGGAGGAGCTTGATGGAAGCGTGCGAGAAGGGGCGTAACTGATTTGGAAACCAGAGGAAAGGCGCTGTTTTCACCGAATTAGAATCGCGGGAAAATAGAGAAGAGTTTGTTTGAAGGTCTCGCGAGGTGGGGATCGGAAGTCCTCCATCTCAAGCATCCAATGCTGAAAGCGGCCTGATTTTCTCTACCGGAAGCCCTTTTCCAGAGGCTGGGAACACGGCCCACCTAGCAGGAAGTCCCACCTCCTTGAGCTCCGCCACCCTTCCCGAAGTTTTTCTGTCACCTGTGTTAGGCTCCGTCCCCTTTCCGCGTTTTATCCCCGTACCAGAAAAGGATACATTTAGTGCCTCCCACCCAGCTCCACTAAACGGGTTGGATATCTCATTCTTTGAGTTGGTGTTCCTTCCCCGGCGCCCCCATGTAGCTGGGAAGTGGGACCTGGGGGTGGTTGGACCCCTGGGATCCTAAAGGAGG read_through 16.60 RT 0 other 0,0,0 NM_001165417,NM_001165418,NM_003562 ,, ,, ,, ,, ,, ,, NM_015528,NM_015528,NM_015528 ,, ,, ,, ,, 1053,1053,1053 ,, ,, ,, ;; geneB_no_inframe_contig_found geneB_transcripts=NM_015528;geneb_utr_codons=13 ,, ,, MV4_11_RNAseq_1 NA chr8 130680445 - intergenic NA chr8 130641491 - intergenic ? 5 11 85 141 0.000 0.000 130 190 0.110 0.240 85 85 44 45 CTGAGTTGCAATTTCCTTCTATATTCTGAATACAAATTCATCATCAGATATATGTGTTGTGAAGTTTTCTTCGAGGATTTTCCAGGGGATTCTGAACATCTCTGAAGCTATCGGTGCCCCTCAATGGATCTCTGTAACTTTTTAGCTGTGTGGCCATGTGCAAATCACTTGACCATTTTGAGACTCAGTTTCCTCCACTGTAAAATGAAGAGACTAGAACAGCAC read_through 16.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 LINC00662 chr19 28283908 - 3utr NA chr19 28220960 - intergenic > 0 6 143 72 0.000 0.000 0 158 0.070 0.100 143 143 224 59 CCTACACGCTTCTGAAACTGGTGTAGGAACAACCTCAGTTCTGTGAAAGGCGGACGCAGCAGGACAGAATCTCCGTGGACATCTGTCTGGAGGAGCAATTTTACTGCGACATTTTAAAGAAACAAATTTAATTGATTTCCAAGGTTAAAAACGCTCTTTTTGTAGAACCTACAAAAAGACATTTCTGAGCCCATTGAGGCCTACAGTGAAAAAC read_through 15.80 RT 0 other geneB_no_transcripts MV4_11_RNAseq_1 NA chr2 140151975 + intergenic NA chr2 140168646 + intergenic ? 5 5 127 139 0.000 0.000 108 192 0.310 0.160 127 127 15 30 CAGCTTCTGAGGACAAAACTTGTGATAGAATCTTTAATGTTCTGGAAGAAACTGTCATAGCAGACAGTAGAAATCATGCGCGCATGGTCTCATGATGCTGGGCCCTCCTATTTTGTCTTTAGAATCCGGGAAGGCCTGCAGCTTCACTCCTGAGCCAGCGAGACCACGAGCCCACCAGGAGGAACGAACAACTCCAGAGGCGCCGCCTTAAGAGCTGTAACCCGGCAAAGGTCTGCAGCTTCACTCCTGAGCCAGGGAGACCACG read_through 15.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 115380370 - intergenic NA chr4 115299703 - intergenic ? 6 6 146 161 0.000 0.000 162 138 0.290 0.260 146 146 20 22 GGGATGACCTTAAGCCAGATGCATGGAGAGTTCTTTCATGAGAGAAGCTGGAGTTTAGGAACACACACAGGTAGACAGGTAGATGTGGTGGGGATGGTAGAGGCTTTTCTGATAGCTTCCATTTTCTTCTTGATGTTGTTATTCACCTCAATGATAGGATTGTAAAAGCTTCCCTGTTGCATTTCACTTGGTGGAGCTCTCAGATCACTTCTGGTTTGGAGCCGCCCGGTTAATGAATCATTGTTAGCGCGAAGGTCTGCAGCTTCACTCCTGAGCCAGCAAGATCATGAACCCAACGGAAGGAAG read_through 15.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr11 35071672 + intergenic NA chr11 35108175 + intergenic ? 5 5 60 102 0.000 0.000 292 158 0.330 0.310 60 60 14 15 GTAAGAAGTGCCTTTCACCTTCCGCCACGATTCTCAGGCCTCCCCAGCCATGTGGAACTTTTTCTAGGGCTGCCATAGAAAGTACGGCAAACAGGGCACCTGTAGTCCCAGCGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCACT read_through 14.60 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr4 55668528 - intergenic NA chr4 55656045 - intergenic ? 5 0 105 91 0.000 0.000 270 0 0.090 0.000 105 105 53 50 GTTCTTTTATGATTTTTTAATTAAGGAAAAAAGTGTTTTGCTTAGAATATATACATCTACATATTTGAAAGAAAATACACCAAAATGTCAAGTGTTCATTTTGAGGCAAAGGATCTAAATAGAAAACATTAAAGAAGTCTCACTCCGATGAATGAGGCCGAGCCTGCAGCTCAAGGAAACCCTGGAGACTGCATA read_through 13.50 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr1 161426920 - intergenic NA chr1 161403685 - intergenic ? 5 0 63 91 0.000 0.000 267 0 0.160 0.000 63 63 31 57 CTCGCCTGCCAGGCTGTGTGCAGGGTTCCCGCTGCCTCTGGCCGGCAGGCGTCCGGGCTGCAGTGGACAACTGGAGCACTACAGCCCCCCTTTCTAGGACACCCCTGAAGGACAGCAGTGAAGAGGAATCTTCCCAGTAAGCAGAACTTTGAG read_through 13.35 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr8 130678849 + intergenic NA chr8 130692174 + intergenic ? 7 7 30 143 0.000 0.000 240 60 0.160 0.170 30 30 43 41 GCCAACGTCTAAGCCACAGAGATGCAACCCATTCTTGAAGTTGAAATGCAGTCTTCGGCATTCTCCCAGAAATGATTCTCAGGAGTTGGGTTTGCAGCCAGCTGTTATGGATCTTCATAAACACCAGAAACTTTGAGAAGCTGAGGCAACACCGACAGCGGAGAACTGTCAC read_through 12.00 RT 0 other unhandled orientation ? MV4_11_RNAseq_1 NA chr2 140169141 + intergenic NA chr2 140227345 + intergenic ? 0 9 72 131 0.000 0.000 0 268 0.000 0.500 72 72 32 17 ATCATATTGTGTTAAATTACTACTTCTAGAAATTCATGTAAATGAAATCAACCAGAATGTGATGTTTTCAGATATATGATCTCTGGTTGTTTTGTGATCCCAGGATCTACTGAGATGTATAGCATAAGAAGTTATACACATCCTGGATTTTGTAAAGAACAGCTTCATTACTGGGTACAAAAAAAAGCAAGATAAAGATCAA read_through 2.99 RT 0 other unhandled orientation ?