sample geneA chrA posA ortA featureA geneB chrB posB ortB featureB sv_ort readsA readsB matchA matchB repeatA repeatB coverageA coverageB ratioA ratioB qposA qposB total_readsA total_readsB contig type score rating medal functional effect frame sv_refseqA sv_refseqA_codon sv_refseqA_exon sv_refseqA_anchor_type sv_refseqA_coding_base_number sv_refseqA_last_coding_base_number sv_refseqA_AA_index sv_refseqA_contig_index sv_refseqB sv_refseqB_codon sv_refseqB_exon sv_refseqB_anchor_type sv_refseqB_coding_base_number sv_refseqB_last_coding_base_number sv_refseqB_AA_index sv_refseqB_contig_index sv_AA sv_desc sv_processing_exception sv_general_info sv_interstitial_AA sv_frame_index SJBALL020016_C27 CLTC chr17 57771209 + coding VMP1 chr17 57915656 + coding > 5 5 72 79 0.000 0.000 293 207 0.010 0.080 72 72 1263 78 CAGGCACCTTTTGGTTATGGTTATACCGCACCACCGTATGGACAGCCACAGCCTGGCTTTGGGTACAGCATTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCAC DEL 1000.00 HQ 4 Fusion 1,1 NM_001288653,NM_004859 1679,1675 32,32 tuple,tuple 5036,5024 22,22 68,68 NM_030938,NM_030938 325,325 11,11 blat,blat 975,975 1221,1221 24,24 72,72 QAPFGYGYTAPPYGQPQPGFGYSIAVPGIGPSLQKPFQEYLEAQRQKLHH,QAPFGYGYTAPPYGQPQPGFGYSIAVPGIGPSLQKPFQEYLEAQRQKLHH CLTC:NM_001288653[1,32]-VMP1:NM_030938[11,12];CLTC:NM_004859[1,32]-VMP1:NM_030938[11,12] geneB_transcripts=NM_030938 I,I 0,0 SJBALL020016_C27 ASXL1 chr20 30956929 + coding ASXL1 chr20 30954187 + coding > 59 48 91 85 0.000 0.000 1338 974 0.420 0.490 91 86 208 181 CCTCAATGCTATGCTACATTCCAATTCAAGAGGAGGAGAGGGGTTGTTTTATAAACTGCCTGGCCGAATCAGCCTTTTCACGCTCAAGGTATTAGAAAACTACTCGGATGCTCCAATGACACCAAAACAGATTCTGCAGGTCATAGAGGCAGAAGGACTAAAGGAAATGAGAAGTGGGACT Internal_dup 462.40 HQ 2 ITD 1,1,1,1 NM_001164603,NM_015338,NM_001164603,NM_015338 85,85,85,85 3,3,3,3 perfect,perfect,perfect,perfect ,,, 28,28,28,28 87,87,87,87 NM_001164603,NM_001164603,NM_015338,NM_015338 20,20,20,20 2,2,2,2 tuple,tuple,tuple,tuple ,,, ,,, 29,29,29,29 88,88,88,88 LNAMLHSNSRGGEGLFYKLPGRISLFTLKVLENYSDAPMTPKQILQVIEAEGLKEMRSGT,LNAMLHSNSRGGEGLFYKLPGRISLFTLKVLENYSDAPMTPKQILQVIEAEGLKEMRSGT,LNAMLHSNSRGGEGLFYKLPGRISLFTLKVLENYSDAPMTPKQILQVIEAEGLKEMRSGT,LNAMLHSNSRGGEGLFYKLPGRISLFTLKVLENYSDAPMTPKQILQVIEAEGLKEMRSGT ASXL1:NM_001164603[1,3]-ASXL1:NM_001164603[2,4];ASXL1:NM_015338[1,3]-ASXL1:NM_001164603[2,4];ASXL1:NM_001164603[1,3]-ASXL1:NM_015338[2,12];ASXL1:NM_015338[1,3]-ASXL1:NM_015338[2,12] geneB_CDS_mapping_exception=NM_001164603:-2;geneB_CDS_mapping_exception=NM_015338:-2 geneB_transcripts=NM_001164603,NM_015338 ,,, 1,1,1,1 SJBALL020016_C27 NA chr10 135480520 - intergenic IGH chr14 106330462 - 5utr > 7 29 209 268 0.960 0.000 242 358 0.860 0.110 210 217 9 271 ACGAGTCTCCGTCGCCGTCCTCGTCCCCGGGCTTCCGCGGGGAGGGTGCTGTCCGAAGGTGTCGGGAGGGCCATCGCGGTGAGCCCCGGCCGCAATTTCACGGACGGACGCGGGCAGAGAGAGGCCGGCGGGCTCCCGTGCACCTCAGCCGGACTGTGCACTGCGGCAGGTGCAGCCAGGAGGCCTGCCCGGACAGCCAGCCAGCCAGCGTGTTGCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTGGCCGTTGGCTGCCTCGCACAGGACTTCCTTCCCGACTCCATCACTTTCTCCTGGAAATACAAGAACAACTCTGACATCAGCAGCACCCGGGGCTTCCCATCAGTCCTGAGAGGGGGCAAGTACGCAGCCACCTCACAGGTGCTGCTGCCTTCCAAGGAC CTX 256.32 HQ 2 other geneB_no_transcripts SJBALL020016_C27 XPO1 chr2 61749746 - coding XPO1 chr2 61761038 - coding > 17 19 75 85 0.000 0.000 293 790 0.030 0.070 90 88 866 495 GGCAGGCCTCCACAAGTACTATGGACTACAAATTTTGGAAAATGTGATAAAAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTCAGCTGCTTGATTTCAGCCAAAAACTGGATATCAA Internal_dup 216.60 HQ 0 ITD 0,2 NM_003400, , 4, , 301, , , NM_003400,NM_003400 -1,-1 2, tuple,tuple , 3216,3216 31, , QASTSTMDYKFWKM**KQGGRFFQGTSAK*SMPAIMTMLADHAARQLLDFSQKLDI, XPO1:NM_003400[1,4]-XPO1:NM_003400[2,25]; geneB_transcripts=NM_003400;geneb_utr_codons=2 , 2, SJBALL020016_C27 PAX5 chr9 37002644 - coding PAX5 chr9 37020798 - coding > 13 14 84 95 0.000 0.000 355 434 0.080 0.130 95 92 243 269 AATACTCTGTGGCCGGCTCGTCGTACTCCATCAGCGGCATCCTGGGCATCACGTCCCCCAGCGCCGACACCAACAAGCGCAAGAGAGACGAAGGACATGGAGGAGTGAATCAGCTTGGGGGGGTTTTTGTGAATGGACGGCCACTCCCGGATGTAGTCCGCCAGAGGATAGTGGAACTTGCTCATC Internal_dup 157.80 HQ 4 ITD 1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,1,0,0,1,1,1 NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734 202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202,202,202,202,202,94,202,,,136,94,202 5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5,5,5,5,5,4,5,4,4,4,4,5 tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,,,tuple,tuple,tuple 604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604,604,604,604,604,280,604,,,406,280,604 29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29,29,29,29,29,29,29,,,29,29,29 91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91,91,91,91,91,91,91,,,91,91,91 NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47 1074,1074,1074,1074,1074,1074,1074,1074,1074,1074,1074,1089,1089,1089,1089,1089,1089,1089,1089,1089,1089,1089,975,975,975,975,975,975,975,975,975,975,975,888,888,888,888,888,888,888,888,888,888,888,987,987,987,987,987,987,987,987,987,987,987,960,960,960,960,960,960,960,960,960,960,960,1047,1047,1047,1047,1047,1047,1047,1047,1047,1047,1047,876,876,876,876,876,876,876,876,876,876,876,1176,1176,1176,1176,1176,1176,1176,1176,1176,1176,1176 30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30,30 92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92,92,92,92,92,92,92,,,92,92,92 YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH,YSVAGSSYSISGILGITSPSADTNKRKRDEGHGGVNQLGGVFVNGRPLPDVVRQRIVELAH PAX5:NM_001280547[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280548[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280549[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280550[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280551[1,4]-PAX5:NM_001280547[2,9];PAX5:NM_001280552[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280553[1,4]-PAX5:NM_001280547[2,9];PAX5:NM_001280554[1,4]-PAX5:NM_001280547[2,9];PAX5:NM_001280555[1,4]-PAX5:NM_001280547[2,9];PAX5:NM_001280556[1,4]-PAX5:NM_001280547[2,9];PAX5:NM_016734[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280547[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280548[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280549[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280550[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280551[1,4]-PAX5:NM_001280548[2,9];PAX5:NM_001280552[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280553[1,4]-PAX5:NM_001280548[2,9];PAX5:NM_001280554[1,4]-PAX5:NM_001280548[2,9];PAX5:NM_001280555[1,4]-PAX5:NM_001280548[2,9];PAX5:NM_001280556[1,4]-PAX5:NM_001280548[2,9];PAX5:NM_016734[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280547[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280548[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280549[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280550[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280551[1,4]-PAX5:NM_001280549[2,8];PAX5:NM_001280552[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280553[1,4]-PAX5:NM_001280549[2,8];PAX5:NM_001280554[1,4]-PAX5:NM_001280549[2,8];PAX5:NM_001280555[1,4]-PAX5:NM_001280549[2,8];PAX5:NM_001280556[1,4]-PAX5:NM_001280549[2,8];PAX5:NM_016734[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280547[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280548[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280549[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280550[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280551[1,4]-PAX5:NM_001280550[2,7];PAX5:NM_001280552[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280553[1,4]-PAX5:NM_001280550[2,7];PAX5:NM_001280554[1,4]-PAX5:NM_001280550[2,7];PAX5:NM_001280555[1,4]-PAX5:NM_001280550[2,7];PAX5:NM_001280556[1,4]-PAX5:NM_001280550[2,7];PAX5:NM_016734[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280547[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280548[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280549[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280550[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280551[1,4]-PAX5:NM_001280552[2,8];PAX5:NM_001280552[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280553[1,4]-PAX5:NM_001280552[2,8];PAX5:NM_001280554[1,4]-PAX5:NM_001280552[2,8];PAX5:NM_001280555[1,4]-PAX5:NM_001280552[2,8];PAX5:NM_001280556[1,4]-PAX5:NM_001280552[2,8];PAX5:NM_016734[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280547[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280548[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280549[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280550[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280551[1,4]-PAX5:NM_001280553[2,8];PAX5:NM_001280552[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280553[1,4]-PAX5:NM_001280553[2,8];PAX5:NM_001280554[1,4]-PAX5:NM_001280553[2,8];PAX5:NM_001280555[1,4]-PAX5:NM_001280553[2,8];PAX5:NM_001280556[1,4]-PAX5:NM_001280553[2,8];PAX5:NM_016734[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280547[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280548[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280549[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280550[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280551[1,4]-PAX5:NM_001280554[2,9];PAX5:NM_001280552[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280553[1,4]-PAX5:NM_001280554[2,9];PAX5:NM_001280554[1,4]-PAX5:NM_001280554[2,9];PAX5:NM_001280555[1,4]-PAX5:NM_001280554[2,9];PAX5:NM_001280556[1,4]-PAX5:NM_001280554[2,9];PAX5:NM_016734[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280547[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280548[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280549[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280550[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280551[1,4]-PAX5:NM_001280555[2,8];PAX5:NM_001280552[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280553[1,4]-PAX5:NM_001280555[2,8];PAX5:NM_001280554[1,4]-PAX5:NM_001280555[2,8];PAX5:NM_001280555[1,4]-PAX5:NM_001280555[2,8];PAX5:NM_001280556[1,4]-PAX5:NM_001280555[2,8];PAX5:NM_016734[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280547[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280548[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280549[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280550[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280551[1,4]-PAX5:NM_016734[2,10];PAX5:NM_001280552[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280553[1,4]-PAX5:NM_016734[2,10];PAX5:NM_001280554[1,4]-PAX5:NM_016734[2,10];PAX5:NM_001280555[1,4]-PAX5:NM_016734[2,10];PAX5:NM_001280556[1,4]-PAX5:NM_016734[2,10];PAX5:NM_016734[1,5]-PAX5:NM_016734[2,10] geneB_breakpoint_not_mapped_to_CDS=NM_001280551;geneB_breakpoint_not_mapped_to_CDS=NM_001280556 geneB_transcripts=NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734;geneB_intronic=NM_001280551;geneB_intronic=NM_001280556 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2 SJBALL020016_C27 MSH2 chr2 47672796 + coding KCNK12 chr2 47830150 + intergenic > 17 17 275 75 0.000 0.000 583 975 0.180 0.270 275 275 109 61 ATTGAGGCAGACTTTACAAGAAGATTTACTTCGTCGATTCCCAGATCTTAACCGACTTGCCAAGAAGTTTCAAAGACAAGCAGCAAACTTACAAGATTGTTACCGACTCTATCAGGGTATAAATCAACTACCTAATGTTATACAGGCTCTGGAAAAACATGAAGGAAAACACCAGAAATTATTGTTGGCAGTTTTTGTGACTCCTCTTACTGATCTTCGTTCTGACTTCTCCAAGTTTCAGGAAATGATAGAAACAACTTTAGATATGGATCAGGACACAGAGATGCCAGAGAAATGGGGTCAGTTCTTCCTCCTCCTCGTTCTTAACAACACTTATTAAATAACTACT DEL 155.80 HQ 1 CLoss 0,0 NM_000251,NM_001258281 , , , 1386,1188 , , NM_022055,NM_022055 , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 PHIP chr6 79752558 - coding PHIP chr6 79770535 - coding > 12 7 90 80 0.050 0.040 367 244 0.130 0.150 91 91 161 104 GCACATGAAAATGCATAAACGAATTCTTGGACACTTGTCATCTGTGTACTGTGTAACTTTTGATCGAACTGGCAGACGGATATTTACTGTGAAGTATTACAGACACTTAGCACCTGATCACTTGCTGCAAATATGTCATCGACTAGGACCTCTTCTTGAACAAGAAATTCC Internal_dup 116.82 HQ 2 ITD 1 NM_017934 201 7 perfect 28 87 NM_017934 64 5 tuple 29 88 HMKMHKRILGHLSSVYCVTFDRTGRRIFTVKYYRHLAPDHLLQICHRLGPLLEQEI PHIP:NM_017934[1,7]-PHIP:NM_017934[5,40] geneB_CDS_mapping_exception=NM_017934:-2 geneB_transcripts=NM_017934 1 SJBALL020016_C27 MSH3 chr5 80088663 + coding MSH3 chr5 80071513 + coding > 7 2 96 94 0.000 0.000 240 135 0.270 0.100 97 97 54 36 GAAAGAAAAATTGTAATAAAAAATGGAAGGCACCCTGTGATTGATGTGTTGCTGGGAGAACAGGATCAATATGTCCCAAATAATACAGATTTATCATTTATGATAGAAATAAAGAACTCTGCTGTATCTTGTATACCAACTGATTGGGTAAAGGTTGGAAGCACAAAAGCTGTGAGCCGCTTTCACTCCCC Internal_dup 75.00 HQ 0 ITD 1 NM_002439 886 19 perfect 2655 31 95 NM_002439 752 16 tuple 2254 3414 32 96 ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHS MSH3:NM_002439[1,19]-MSH3:NM_002439[16,24] geneB_transcripts=NM_002439 0 SJBALL020016_C27 WHSC1 chr4 1936989 + coding WHSC1 chr4 1905944 + coding > 3 0 52 81 0.000 0.020 108 0 0.060 0.000 53 53 420 495 TGAGGACACACCCAGGAAAAGACTCAGGACGGACAAGCACAGTCTTCGGAAGATTCCAGCTAAGAAAGAGTCTTGTCCAAACACTGGAAGAGACAAAGACCACCTGTTGAAATACAACGTTGGTGATTTGGTGA Internal_dup 21.17 HQ 2 ITD 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335 559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559,559 7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51,51 NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_007331,NM_007331,NM_007331,NM_007331,NM_007331,NM_007331,NM_133330,NM_133330,NM_133330,NM_133330,NM_133330,NM_133330,NM_133331,NM_133331,NM_133331,NM_133331,NM_133331,NM_133331,NM_133334,NM_133334,NM_133334,NM_133334,NM_133334,NM_133334,NM_133335,NM_133335,NM_133335,NM_133335,NM_133335,NM_133335 200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200,200 3,3,3,3,3,3,5,5,5,5,5,5,5,5,5,5,5,5,4,4,4,4,4,4,2,2,2,2,2,2,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599,599 4098,4098,4098,4098,4098,4098,1890,1890,1890,1890,1890,1890,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,1944,1944,1944,1944,1944,1944,4098,4098,4098,4098,4098,4098 17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17,17 52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52,52 EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV,EDTPRKRLRTDKHSLRKIPAKKESCPNTGRDKDHLLKYNVGDLV WHSC1:NM_001042424[1,7]-WHSC1:NM_001042424[3,22];WHSC1:NM_007331[1,9]-WHSC1:NM_001042424[3,22];WHSC1:NM_133330[1,9]-WHSC1:NM_001042424[3,22];WHSC1:NM_133331[1,8]-WHSC1:NM_001042424[3,22];WHSC1:NM_133334[1,6]-WHSC1:NM_001042424[3,22];WHSC1:NM_133335[1,7]-WHSC1:NM_001042424[3,22];WHSC1:NM_001042424[1,7]-WHSC1:NM_007331[5,11];WHSC1:NM_007331[1,9]-WHSC1:NM_007331[5,11];WHSC1:NM_133330[1,9]-WHSC1:NM_007331[5,11];WHSC1:NM_133331[1,8]-WHSC1:NM_007331[5,11];WHSC1:NM_133334[1,6]-WHSC1:NM_007331[5,11];WHSC1:NM_133335[1,7]-WHSC1:NM_007331[5,11];WHSC1:NM_001042424[1,7]-WHSC1:NM_133330[5,24];WHSC1:NM_007331[1,9]-WHSC1:NM_133330[5,24];WHSC1:NM_133330[1,9]-WHSC1:NM_133330[5,24];WHSC1:NM_133331[1,8]-WHSC1:NM_133330[5,24];WHSC1:NM_133334[1,6]-WHSC1:NM_133330[5,24];WHSC1:NM_133335[1,7]-WHSC1:NM_133330[5,24];WHSC1:NM_001042424[1,7]-WHSC1:NM_133331[4,23];WHSC1:NM_007331[1,9]-WHSC1:NM_133331[4,23];WHSC1:NM_133330[1,9]-WHSC1:NM_133331[4,23];WHSC1:NM_133331[1,8]-WHSC1:NM_133331[4,23];WHSC1:NM_133334[1,6]-WHSC1:NM_133331[4,23];WHSC1:NM_133335[1,7]-WHSC1:NM_133331[4,23];WHSC1:NM_001042424[1,7]-WHSC1:NM_133334[2,9];WHSC1:NM_007331[1,9]-WHSC1:NM_133334[2,9];WHSC1:NM_133330[1,9]-WHSC1:NM_133334[2,9];WHSC1:NM_133331[1,8]-WHSC1:NM_133334[2,9];WHSC1:NM_133334[1,6]-WHSC1:NM_133334[2,9];WHSC1:NM_133335[1,7]-WHSC1:NM_133334[2,9];WHSC1:NM_001042424[1,7]-WHSC1:NM_133335[3,22];WHSC1:NM_007331[1,9]-WHSC1:NM_133335[3,22];WHSC1:NM_133330[1,9]-WHSC1:NM_133335[3,22];WHSC1:NM_133331[1,8]-WHSC1:NM_133335[3,22];WHSC1:NM_133334[1,6]-WHSC1:NM_133335[3,22];WHSC1:NM_133335[1,7]-WHSC1:NM_133335[3,22] geneB_transcripts=NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 SJBALL020016_C27 KAT6B chr10 76603236 + coding KAT6B chr10 76602358 + 5utr > 3 0 78 52 0.040 0.020 108 1 0.250 0.000 79 79 86 77 CAAAGGGGCACCTCAGTATCCCAGTGCATTCCCATCCTCGCTCCCACCTGTCAGCCTTCTACCCCATGAGAAAGACCAGGTCTTGATTTCCCAGTTAAAGATGTTCTTCACCCGAATGCAGTCTTTCCTG Internal_dup 21.17 HQ 2 ITD 1,1,1,1,1,1,1,1,1 NM_001256468,NM_001256469,NM_012330,NM_001256468,NM_001256469,NM_012330,NM_001256468,NM_001256469,NM_012330 208,208,208,208,208,208,208,208,208 3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 621,621,621,621,621,621,621,621,621 25,25,25,25,25,25,25,25,25 78,78,78,78,78,78,78,78,78 NM_001256468,NM_001256468,NM_001256468,NM_001256469,NM_001256469,NM_001256469,NM_012330,NM_012330,NM_012330 -85,-85,-85,-85,-85,-85,-85,-85,-85 3,3,3,3,3,3,3,3,3 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,, 5673,5673,5673,5346,5346,5346,6222,6222,6222 29,29,29,29,29,29,29,29,29 88,88,88,88,88,88,88,88,88 KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL,KGAPQYPSAFPSSLPPVSLLPHEKDQVLISQLKMFFTRMQSFL KAT6B:NM_001256468[1,3]-KAT6B:NM_001256468[3,18];KAT6B:NM_001256469[1,3]-KAT6B:NM_001256468[3,18];KAT6B:NM_012330[1,3]-KAT6B:NM_001256468[3,18];KAT6B:NM_001256468[1,3]-KAT6B:NM_001256469[3,18];KAT6B:NM_001256469[1,3]-KAT6B:NM_001256469[3,18];KAT6B:NM_012330[1,3]-KAT6B:NM_001256469[3,18];KAT6B:NM_001256468[1,3]-KAT6B:NM_012330[3,18];KAT6B:NM_001256469[1,3]-KAT6B:NM_012330[3,18];KAT6B:NM_012330[1,3]-KAT6B:NM_012330[3,18] geneB_transcripts=NM_001256468,NM_001256469,NM_012330;geneb_utr_codons=13 VLI,VLI,VLI,VLI,VLI,VLI,VLI,VLI,VLI 1,1,1,1,1,1,1,1,1 SJBALL020016_C27 PAX5 chr9 36966548 - coding PAX5 chr9 37020798 - coding > 6 5 78 85 0.030 0.020 272 182 0.060 0.130 78 78 298 269 GGAGGTGCTGGACCGCGTGTTTGAGAGGCAGCACTACTCAGACATCTTCACCACCACAGAGCCCATCAAGCCCGAGCAGGACATGGAGGAGTGAATCAGCTTGGGGGGGTTTTTGTGAATGGACGGCCACTCCCGGATGTAGTCCGCCAGAGGATAGTGGAAC Internal_dup 4.43 HQ 4 ITD 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,6,6,6,6,5,6,5,5,5,5,6,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,778,778,778,778,454,778,649,649,580,454,778,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280547,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280548,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280549,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280550,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280552,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280553,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280554,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_001280555,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_016734,NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_016734 16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16,16 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47,47 1074,1074,1074,1074,1074,1074,1074,1074,1074,1074,1074,1089,1089,1089,1089,1089,1089,1089,1089,1089,1089,1089,975,975,975,975,975,975,975,975,975,975,975,888,888,888,888,888,888,888,888,888,888,888,987,987,987,987,987,987,987,987,987,987,987,960,960,960,960,960,960,960,960,960,960,960,1047,1047,1047,1047,1047,1047,1047,1047,1047,1047,1047,876,876,876,876,876,876,876,876,876,876,876,1176,1176,1176,1176,1176,1176,1176,1176,1176,1176,1176,1074,1089,975,888,987,960,1047,876,1176 26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,26,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,GGAGPRV*EAALLRHLHHHRAHQARAGHGGVNQLGGVFVNGRPLPDVVRQRIVE,,,,,,,,, PAX5:NM_001280547[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280548[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280549[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280550[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280551[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280552[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280553[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280554[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280555[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_001280556[1,5]-PAX5:NM_001280547[2,9];PAX5:NM_016734[1,6]-PAX5:NM_001280547[2,9];PAX5:NM_001280547[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280548[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280549[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280550[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280551[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280552[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280553[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280554[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280555[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_001280556[1,5]-PAX5:NM_001280548[2,9];PAX5:NM_016734[1,6]-PAX5:NM_001280548[2,9];PAX5:NM_001280547[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280548[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280549[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280550[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280551[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280552[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280553[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280554[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280555[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_001280556[1,5]-PAX5:NM_001280549[2,8];PAX5:NM_016734[1,6]-PAX5:NM_001280549[2,8];PAX5:NM_001280547[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280548[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280549[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280550[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280551[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280552[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280553[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280554[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280555[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_001280556[1,5]-PAX5:NM_001280550[2,7];PAX5:NM_016734[1,6]-PAX5:NM_001280550[2,7];PAX5:NM_001280547[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280548[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280549[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280550[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280551[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280552[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280553[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280554[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280555[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_001280556[1,5]-PAX5:NM_001280552[2,8];PAX5:NM_016734[1,6]-PAX5:NM_001280552[2,8];PAX5:NM_001280547[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280548[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280549[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280550[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280551[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280552[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280553[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280554[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280555[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_001280556[1,5]-PAX5:NM_001280553[2,8];PAX5:NM_016734[1,6]-PAX5:NM_001280553[2,8];PAX5:NM_001280547[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280548[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280549[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280550[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280551[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280552[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280553[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280554[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280555[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_001280556[1,5]-PAX5:NM_001280554[2,9];PAX5:NM_016734[1,6]-PAX5:NM_001280554[2,9];PAX5:NM_001280547[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280548[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280549[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280550[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280551[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280552[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280553[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280554[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280555[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_001280556[1,5]-PAX5:NM_001280555[2,8];PAX5:NM_016734[1,6]-PAX5:NM_001280555[2,8];PAX5:NM_001280547[1,6]-PAX5:NM_016734[2,10];PAX5:NM_001280548[1,6]-PAX5:NM_016734[2,10];PAX5:NM_001280549[1,6]-PAX5:NM_016734[2,10];PAX5:NM_001280550[1,6]-PAX5:NM_016734[2,10];PAX5:NM_001280551[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280552[1,6]-PAX5:NM_016734[2,10];PAX5:NM_001280553[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280554[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280555[1,5]-PAX5:NM_016734[2,10];PAX5:NM_001280556[1,5]-PAX5:NM_016734[2,10];PAX5:NM_016734[1,6]-PAX5:NM_016734[2,10];;;;;;;;; geneB_breakpoint_not_mapped_to_CDS=NM_001280551;geneB_breakpoint_not_mapped_to_CDS=NM_001280556 geneB_transcripts=NM_001280547,NM_001280548,NM_001280549,NM_001280550,NM_001280551,NM_001280552,NM_001280553,NM_001280554,NM_001280555,NM_001280556,NM_016734;geneB_intronic=NM_001280551;geneB_intronic=NM_001280556 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,,,,,, SJBALL020016_C27 UBTF chr17 42284822 - coding UBTF chr17 42284908 - coding > 2 0 103 31 0.000 0.000 77 0 0.020 0.010 113 127 473 490 GAGGACGAAGACGACGACGAGGATGACGATGAGGATGAAGATGATGAGAATGGGGACTCCTCTGAAGATGGCGGCGACTCCTCTGAGTCCAGCAGCGAGGACGAGAGCGAGGATGGGGATGAGAATGAAGATGATGAGAATGGGGACTCCTCTGAAG Internal_dup 0.01 HQ 4 ITD 1,1,1,1,1,1,1,1,1 NM_001076683,NM_001076684,NM_014233,NM_001076683,NM_001076684,NM_014233,NM_001076683,NM_001076684,NM_014233 704,704,741,704,704,741,704,704,741 19,19,20,19,19,20,19,19,20 perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect,perfect 2058,2058,2169,2058,2058,2169,2058,2058,2169 11,11,11,11,11,11,11,11,11 35,35,35,35,35,35,35,35,35 NM_001076683,NM_001076683,NM_001076683,NM_001076684,NM_001076684,NM_001076684,NM_014233,NM_014233,NM_014233 658,658,658,658,658,658,695,695,695 19,19,19,19,19,19,20,20,20 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 1972,1972,1972,1972,1972,1972,2083,2083,2083 2184,2184,2184,2184,2184,2184,2295,2295,2295 12,12,12,12,12,12,12,12,12 36,36,36,36,36,36,36,36,36 EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE,EDEDDDEDDDEDEDDENGDSSEDGGDSSESSSEDESEDGDENEDDENGDSSE UBTF:NM_001076683[1,19]-UBTF:NM_001076683[19,20];UBTF:NM_001076684[1,19]-UBTF:NM_001076683[19,20];UBTF:NM_014233[1,20]-UBTF:NM_001076683[19,20];UBTF:NM_001076683[1,19]-UBTF:NM_001076684[19,20];UBTF:NM_001076684[1,19]-UBTF:NM_001076684[19,20];UBTF:NM_014233[1,20]-UBTF:NM_001076684[19,20];UBTF:NM_001076683[1,19]-UBTF:NM_014233[20,21];UBTF:NM_001076684[1,19]-UBTF:NM_014233[20,21];UBTF:NM_014233[1,20]-UBTF:NM_014233[20,21] geneB_transcripts=NM_001076683,NM_001076684,NM_014233;geneB_expanded_tuple_required=EDDENGDSSED;reannotated geneA from UBTF,MIR6782 to UBTF;reannotated geneB from UBTF,MIR6782 to UBTF ,,,,,,,, 0,0,0,0,0,0,0,0,0 SJBALL020016_C27 FKBP8 chr19 18650180 - coding PPP1R12B chr1 202407774 + intron > 37 0 218 65 0.000 0.000 895 1 0.070 0.000 219 225 711 19 CAGGTTCGAGCCGCCCGGTCAAGGGCCAGGTGGTCACCGTACATCTGCAGACGTCGCTGGAGAATGGCACACGGGTGCAGGAGGAGCCGGAGCTGGTGTTCACTCTGGGTGACTGTGACGTCATCCAGGCCCTGGATCTCAGTGTCCCACTCATGGACGTGGGGGAGACGGCCATGGTCACTGCTGACTCCAAGTACTGCTACGGCCCCCAAGGCAGGGAACGGGCTGTTGAGGAAGAAGACGCTGGTCCCAGGGCCGCCAGGTTCGAGCCGCCCGGTCAAGGGCCAGGTGGTCC CTX 895.00 LQ 0 CLoss NM_012181 551 NM_002481 1458 2949 geneB_no_inframe_contig_found geneB_transcripts=NM_002481 SJBALL020016_C27 RNU6-2_locG chr15 68132447 + intergenic TCF12 chr15 57355948 + coding > 0 6 66 132 0.000 0.000 0 231 0.500 0.050 86 82 6 211 CCACAGCCGTTTACCATGAGACGGTGTTTCGTCCTTTCCACAAGATATATAAAGCCAAGAAATCGAAATACTTTCAAGTTACGGTATTGATGAAAGAGGAGGTACAACATCTTGGGGAACAAGTGGTCAACCAAGTCCTTCCTATGATTCATCTAGAGGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGAGCC INS 231.00 LQ 2 NLoss 0,0,0,0 ,,, ,,, ,,, ,,, ,,, ,,, ,,, NM_003205,NM_207036,NM_207037,NM_207038 50,50,50,50 ,,, tuple,tuple,tuple,tuple 149,149,149,149 2049,2121,2121,2049 ,,, ,,, ,,, ;;; geneA_no_transcript_IDs_found geneB_transcripts=NM_003205,NM_207036,NM_207037,NM_207038 ,,, ,,, SJBALL020016_C27 NA chr5 164149813 + intergenic LOC102546299 chr5 163913679 + 5utr > 1 3 90 70 0.000 0.000 30 100 0.380 0.210 90 89 29 58 GAAACCATGTCTAGACAAGGTGCTGGAAAGACCCAGGGAAGACACAGGGAAATCATCTTTCGGGAATTTATCTAAGAAGAACTTCTTATGAATCTTCTGGAGAGGAAAGAAGAAACCATGTCTAGACAAGGTGCTGGAAAGACCCAGGGAAGACACAGGCTTTGTTATCAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATT INS 130.00 LQ 0 other geneB_no_transcripts SJBALL020016_C27 ATR chr3 142299761 - intergenic NA chr18 6462923 + intergenic > 0 37 47 92 0.000 0.900 1 494 0.010 0.150 52 46 0 288 CCTTCTTGGCTTCGGGTTTCTTCTCTTTAGTATCTGGCTTCTCAACTTTTTCACCTTGCCACCAGCATCAACCTTCTTGGCTTCGGGTTTCTTCTCTTTAGTATCTGGCTTCTCAACTTTTTCACCCGCCATCTTGCA CTX 110.33 LQ 0 other 0 NM_001184 geneB_no_transcripts SJBALL020016_C27 NBPF11_locB,NBPF8_locB,NBPF14,NBPF9_locB,NBPF25P_locC chr1 147930761 - intron NBPF20,NBPF8_locA,NBPF9_locA,NBPF25P_locA,NBPF10,NBPF25P_locB,NBPF12 chr1 145004785 + intron > 4 4 81 74 0.830 0.040 92 122 0.270 0.230 82 82 29 115 CTTTTGACAGGACTTTCTGTTTCAGATTTCAGATACTCAGACTCCACCTTTACTTTTACCTATGTTGGCGGCCCCAGAAGGAGTGAAGGCAATTTTGAAGGCATGACTACGACCTGCTCTGGCCACAAGAGCTAAGAGTTGCCAGGTGTTGTGGC ITX 109.06 LQ 0 other ,,, NM_001037501-locB,NM_001037501-locB,NM_001037501-locB,NM_001037501-locB ,,, ,,, ,,, ,,, ,,, ,,, NM_001198832,NM_001277444-locA,NM_001278267,NM_022359 ,,, ,,, ,,, ,,, ,,, ,,, ,,, ,,, ;;; geneB_CDS_mapping_exception=NM_001198832:-2;geneB_no_inframe_contig_found;geneB_CDS_mapping_exception=NM_001277444-locA:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001277444-locA;geneB_CDS_mapping_exception=NM_001278267:-4;geneB_breakpoint_not_mapped_to_CDS=NM_001278267 geneB_transcripts=NM_001198832,NM_001277444-locA,NM_001278267,NM_022359;geneB_transcript_strand_disagree=NM_001198832;geneB_transcript_strand_disagree=NM_022359 ,,, ,,, SJBALL020016_C27 NA chr5 163724204 + intergenic NA chr5 165204978 + intergenic ? 27 42 241 113 0.000 0.050 969 996 0.400 0.760 242 242 136 58 ATTAGGTCTCTGTGCAAAGGCAGAGGCTGTGGGAGCAGCATCAAGCAAGACTTCGGGCAGTGATTCTAACTATTGCCTATGAACACCGTGGCTGGGACGACTTTGACGAGGCAATTTATTACTTACGCATAGAACACTGGCTGTGCTGAAACTGGGAGCGCAAACAGCCCCTTGTTTTCTAATTTAGAGACTTGCATCTTTTCGACACTCAACAGTATCAAGACACTCTGCTACTACAGGTGAGAAGTTGCTGTTGAAGCCACACTGCTGATGAGGACTCAGGCAGGTGTCCCGAGAAATCGCCCAGTCGTGAGAGGAACCATAAGAACTTTGTAAGGCAGAGGGCGCCCAGAG DEL 95.83 LQ 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42814490 - intergenic NA chrX 42704548 - intergenic ? 37 23 86 89 0.000 0.000 1409 401 0.060 0.220 86 86 1027 824 CCTTGATTGTGTACTTTCCAGACTAAAGAACTGTCTGTATGTCAGAAGTCTGAAACCAGGCTAACTGGACTAAAATCAAGATGTAGGATTTCCTTGGTCATTTTTTTGACTTAAGATTGTCCTCCAGTAGTTTTCTCAGTTCCCCTTCTCCTTCTGCCATGAGTGGAAACCATC DEL 90.50 LQ 0 other unhandled orientation ? SJBALL020016_C27 EZH2 chr7 148543562 - coding EZH2 chr7 148544397 - coding > 9 5 90 77 0.000 0.040 276 178 0.110 0.100 91 91 191 104 ACGGAAATCTTAAACCAAGAATGGAAACAGCGAAGGATACAGCCTGTGCACATCCTGACTTCTGTGAGCTCATTGCGCGGGACTAGGGAGAATAATCATGGGCCAGACTGGGAAGAAATCTGAGAAGGGACCAGTTTGTTGGCGGAAGCGTGTAAAATCAGAGTACAT Internal_dup 88.59 LQ 0 ITD 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2 NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998,NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998,NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998,NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998,NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 246,,,246,246,246,,,246,246,246,,,246,246,246,,,246,246,246,,,246,246,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001203247,NM_001203247,NM_001203247,NM_001203247,NM_001203247,NM_001203248,NM_001203248,NM_001203248,NM_001203248,NM_001203248,NM_001203249,NM_001203249,NM_001203249,NM_001203249,NM_001203249,NM_004456,NM_004456,NM_004456,NM_004456,NM_004456,NM_152998,NM_152998,NM_152998,NM_152998,NM_152998,NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998 -2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2,-2 2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 2241,2241,2241,2241,2241,2214,2214,2214,2214,2214,2088,2088,2088,2088,2088,2256,2256,2256,2256,2256,2124,2124,2124,2124,2124,2241,2214,2088,2256,2124 32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,32,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,RKS*TKNGNSEGYSLCTS*LL*AHCAGLGRIIMGQTGKKSEKGPVCWRKRVKSEY,,,,, EZH2:NM_001203247[1,3]-EZH2:NM_001203247[2,20];EZH2:NM_001203248[1,3]-EZH2:NM_001203247[2,20];EZH2:NM_001203249[1,3]-EZH2:NM_001203247[2,20];EZH2:NM_004456[1,3]-EZH2:NM_001203247[2,20];EZH2:NM_152998[1,3]-EZH2:NM_001203247[2,20];EZH2:NM_001203247[1,3]-EZH2:NM_001203248[2,20];EZH2:NM_001203248[1,3]-EZH2:NM_001203248[2,20];EZH2:NM_001203249[1,3]-EZH2:NM_001203248[2,20];EZH2:NM_004456[1,3]-EZH2:NM_001203248[2,20];EZH2:NM_152998[1,3]-EZH2:NM_001203248[2,20];EZH2:NM_001203247[1,3]-EZH2:NM_001203249[2,19];EZH2:NM_001203248[1,3]-EZH2:NM_001203249[2,19];EZH2:NM_001203249[1,3]-EZH2:NM_001203249[2,19];EZH2:NM_004456[1,3]-EZH2:NM_001203249[2,19];EZH2:NM_152998[1,3]-EZH2:NM_001203249[2,19];EZH2:NM_001203247[1,3]-EZH2:NM_004456[2,20];EZH2:NM_001203248[1,3]-EZH2:NM_004456[2,20];EZH2:NM_001203249[1,3]-EZH2:NM_004456[2,20];EZH2:NM_004456[1,3]-EZH2:NM_004456[2,20];EZH2:NM_152998[1,3]-EZH2:NM_004456[2,20];EZH2:NM_001203247[1,3]-EZH2:NM_152998[2,19];EZH2:NM_001203248[1,3]-EZH2:NM_152998[2,19];EZH2:NM_001203249[1,3]-EZH2:NM_152998[2,19];EZH2:NM_004456[1,3]-EZH2:NM_152998[2,19];EZH2:NM_152998[1,3]-EZH2:NM_152998[2,19];;;;; geneB_transcripts=NM_001203247,NM_001203248,NM_001203249,NM_004456,NM_152998;geneb_utr_codons=3 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,,,,, SJBALL020016_C27 NA chr8 130365050 - intergenic LINC00977 chr8 130235615 - 3utr > 9 9 158 86 0.000 0.000 458 413 0.070 0.170 158 158 121 42 CTGTTGCCCACAGCGGTCTACCTGCCACACTGGGAAAGATCGAGCAGAGACAGAGAAGAAAAGGAGGCTCCATTTTTCAGGCTGCTCTCCCGCAGGCTCATGTTTTGTGTTCATGCCAGGCAGAGAACACAAAATGTTCCAATAAATAAGTATCAAAGCATCTACTTGTTTCCAAAGTTATTTGGGTCAGCATTTTCCTCCACCCACCACTTAAAACTGACTTGTTTCATACATTTGAAATGT DEL 87.10 LQ 0 other geneB_no_transcripts SJBALL020016_C27 SMAD2 chr18 45391428 - coding SMAD2 chr18 45423180 - 5utr > 10 6 79 74 0.000 0.060 220 182 0.060 0.060 91 91 392 196 AATTATATTCCAGAAACGCCACCTCCTGGATATATCAGTGAAGATGGAGAAACAAGTGACCAACAGTTGAATCAAAGTATGGACACAGGTTCGATACAAGAGGCTGTTTTCCTAGCGTGGCTTGCTGCCTTTGGTAAGAACATGTCGTCCATCTTGCCATTCACG Internal_dup 77.76 LQ 0 ITD 1,1,1,1,1,1,1,1,1 NM_001003652,NM_001135937,NM_005901,NM_001003652,NM_001135937,NM_005901,NM_001003652,NM_001135937,NM_005901 246,216,246,246,216,246,246,216,246 6,5,6,6,5,6,6,5,6 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 730,640,730,730,640,730,730,640,730 30,30,30,30,30,30,30,30,30 92,92,92,92,92,92,92,92,92 NM_001003652,NM_001003652,NM_001003652,NM_001135937,NM_001135937,NM_001135937,NM_005901,NM_005901,NM_005901 -17,-17,-17,-17,-17,-17,-17,-17,-17 2,2,2,2,2,2,2,2,2 tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,, 1404,1404,1404,1314,1314,1314,1404,1404,1404 32,32,32,32,32,32,32,32,32 96,96,96,96,96,96,96,96,96 NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT,NYIPETPPPGYISEDGETSDQQLNQSMDTGSIQEAVFLAWLAAFGKNMSSILPFT SMAD2:NM_001003652[1,6]-SMAD2:NM_001003652[2,11];SMAD2:NM_001135937[1,5]-SMAD2:NM_001003652[2,11];SMAD2:NM_005901[1,6]-SMAD2:NM_001003652[2,11];SMAD2:NM_001003652[1,6]-SMAD2:NM_001135937[2,10];SMAD2:NM_001135937[1,5]-SMAD2:NM_001135937[2,10];SMAD2:NM_005901[1,6]-SMAD2:NM_001135937[2,10];SMAD2:NM_001003652[1,6]-SMAD2:NM_005901[2,11];SMAD2:NM_001135937[1,5]-SMAD2:NM_005901[2,11];SMAD2:NM_005901[1,6]-SMAD2:NM_005901[2,11] geneB_transcripts=NM_001003652,NM_001135937,NM_005901;geneb_utr_codons=13 I,I,I,I,I,I,I,I,I 0,0,0,0,0,0,0,0,0 SJBALL020016_C27 ANTXRLP1 chr10 47620127 - 3utr NA chr10 46694275 + intergenic > 2 1 93 55 0.000 0.840 109 55 0.150 0.110 94 94 23 8 GTTGCTTTTCAGGGCAATCTGGATATCTTCCGTGACCTCTCTCACCCAAGCTGCTGCCAGGTGCCATGGATGTGGTGTCAGCACAGGGGCCAGATGCTACAGAAACTCAAGTGGAACTCTGACTGCCTTGAGAGCTGAATAAAATGCA ITX 72.44 LQ 0 other geneB_no_transcripts SJBALL020016_C27 NA chrX 42704548 + intergenic NA chrX 42814490 + intergenic ? 10 26 93 50 0.000 0.000 263 1132 0.220 0.060 93 93 824 1027 CTTAGATGGTTTCCACTCATGGCAGAAGGAGAAGGGGAACTGAGAAAACTACTGGAGGACAATCTTAAGTCAAAAAAATGACCAAGGAAATCATCTTGATTTTAGTCCAGTTAGCCTGGTTTCAGACTTCTGACATACAGACAGTTCTTTA DEL 69.75 LQ 0 other unhandled orientation ? SJBALL020016_C27 MSH2 chr2 47672796 + coding NA chr2 47859941 + intergenic > 0 11 275 136 0.000 0.000 0 654 0.180 0.370 275 275 109 29 ATTGAGGCAGACTTTACAAGAAGATTTACTTCGTCGATTCCCAGATCTTAACCGACTTGCCAAGAAGTTTCAAAGACAAGCAGCAAACTTACAAGATTGTTACCGACTCTATCAGGGTATAAATCAACTACCTAATGTTATACAGGCTCTGGAAAAACATGAAGGAAAACACCAGAAATTATTGTTGGCAGTTTTTGTGACTCCTCTTACTGATCTTCGTTCTGACTTCTCCAAGTTTCAGGAAATGATAGAAACAACTTTAGATATGGATCAGGGTGAGATGCAGACATCTTTCCATGACACCTGTGGATGCTCTACAATCTGGCCCAGGCTGACCATATCCTGCCTGGAGGGCCGGGCTGGAGTGCAATGCCACGATCTCGGCTCACTGCGACCTCTGCCTCCTGGAC DEL 65.40 LQ 1 CLoss , NM_000251,NM_001258281 , , , 1386,1188 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 IGH chr14 106362538 - 5utr FRG2B chr10 135478576 - intergenic > 117 0 365 92 0.490 0.970 2093 1 0.400 0.000 367 403 494 2 CAGCCCAAAAAATACTTTTAATGTGATTTCTTCTAAATAAAATTTACACCAGGCAAAATGAACTGTCTTCTTAAGGGATAAACTTTCCCCTGGAAAAACTACAAGGAAAATTAAGAAAACGATGATCACATAAACACAGTGGTGGTTACTTCTACTGGGGAAGGAAGAGGGTATGAACTGAGACACACAGGGTTGGCAAGTCTCCAAGCAAGCACAGAATGAATACATTACAGTATCTTGAAAACAGCAGTTAAACTTCTAAATCGCAAGAAGAGGAAAATGCACACAGCTGTGTTTAGAAAATTCTCAGTCCAGCACTATTCATAATAGCAAAGACATTAACCCAGGTTGGGTAAATAAATGATGACACAGGCTTCCCCCATACGGTGACTACAGCCAACCCTGAGGGATCGCAGCGAGGCGGCCTCTTCCGAGGCCTCCAGCTCCCCCGGGGCCTCCGTTTCTAGGAGAGGTTGCGCCTGCTGCAGAAACTCCGGG CTX 62.79 LQ 1 other 0 NM_001080998 geneB_no_transcripts SJBALL020016_C27 LINC01237 chr2 242824786 + 5utr LOC728323 chr2 243037038 + 5utr > 6 6 78 118 0.000 0.000 324 273 0.070 0.080 78 78 105 88 GGCGCGGCCAGGTCACAGTCGGCACCAGAAGTTTGGCAGATCTCAGTGAGGCGTTAGTTTGCATTTCCTTGTGACGGGAGAACTATGCCATTTTTGGGTCAGGACTGGAGATCTCCTGGATGGAGTTGGATTAAGACAGAAGATGGCTGGAAGAATTGTGAATCTTGTAGTCAGAAACTTGAAAGAGAGAATAAC DEL 59.70 LQ 0 other geneB_no_transcripts SJBALL020016_C27 NA chr5 165510753 - intergenic NA chr5 165205079 - intergenic ? 22 1 143 103 0.000 0.000 1075 7 0.380 0.010 143 143 57 100 CCCGCCTTCATTCACTCATCATTTTGCAGTTAAAAACCAGGGAGTTACAAGGTGTAACCTCTGTCGGCTGACACTCCAGTGGCAGTTCTGCGAGTTCTGCTAAATATCCCCTTAGGGATTTCATGCCTCTGGGCGCCCTCTGCCTTACAAAGTTCTTATGGTTCCTCTCACGACTGGGCGATTTCTCGGGACACCTGCCTGAGTCCTCATCAGCAGTGTGGCTTCAACAGCAACTTCTCACCTGTAGTAGCAGAGTGTCTTGATA DEL 54.10 LQ 0 other unhandled orientation ? SJBALL020016_C27 NA chr5 165205079 + intergenic NA chr5 165423091 + intergenic ? 11 12 103 84 0.000 0.000 597 415 0.110 0.180 123 123 100 64 TATCAAGACACTCTGCTACTACAGGTGAGAAGTTGCTGTTGAAGCCACACTGCTGATGAGGACTCAGGCAGGTGTCCCGAGAAATCGCCCAGTCGTGAGAGGAACCATAAGAACTTTGTAAGATAAAATAATCGCAAACCAAACTCACATGTGATTATTCAAATGGTAAACACCGGTGAGAAAGAGGTGCCAGGCTGAGGAAAAAG DEL 50.60 LQ 0 other unhandled orientation ? SJBALL020016_C27 NA chr8 130411777 - intergenic LINC00977 chr8 130280109 - intergenic > 5 5 104 72 0.000 0.000 231 269 0.040 0.140 104 104 139 36 GCCTGGGTTCCTAGGTGATAGGGTGTGGCTGTGTCCCCACCCAAATCTCGTCTTGAATTGTAGCTCCCATAATCCCCACATGTTGTGGAGGGACCCTGTGGAAGGCTACACAGAAGCACTGCTGATTTCAGCCCTGGCAGGACTCCTGTTTAAACATACTTCCCAGAAATCTTGG DEL 50.00 LQ 0 other geneB_no_transcripts SJBALL020016_C27 MSH2 chr2 47672796 + coding KCNK12 chr2 47834531 + intergenic > 0 10 275 79 0.000 0.000 0 467 0.180 0.320 275 275 109 30 ATTGAGGCAGACTTTACAAGAAGATTTACTTCGTCGATTCCCAGATCTTAACCGACTTGCCAAGAAGTTTCAAAGACAAGCAGCAAACTTACAAGATTGTTACCGACTCTATCAGGGTATAAATCAACTACCTAATGTTATACAGGCTCTGGAAAAACATGAAGGAAAACACCAGAAATTATTGTTGGCAGTTTTTGTGACTCCTCTTACTGATCTTCGTTCTGACTTCTCCAAGTTTCAGGAAATGATAGAAACAACTTTAGATATGGATCAGACCCTACTCCCACCCGAAACACACAGCCCCTGACACAGAGCTGGGCATGTGTGGGCTCTCACTAGCGCTGGCTGAACTG DEL 46.70 LQ 1 CLoss 0,0 NM_000251,NM_001258281 , , , 1386,1188 , , NM_022055,NM_022055 , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 ERG chr21 39817327 - coding LINC01423 chr21 39705298 - 3utr > 4 4 82 62 0.000 0.000 164 236 0.020 0.280 82 82 269 8 CTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAGGACCCTCCACTTTTCCACCAGTTTGTCCACCGGTGAAAAGGAGAAGCCAGCCAAGAACCAG DEL 40.00 LQ 1 CLoss ,,,,,,, NM_001136154,NM_001136155,NM_001243428,NM_001243429,NM_001243432,NM_001291391,NM_004449,NM_182918 ,,,,,,, ,,,,,,, ,,,,,,, 257,,257,,257,257,257,236 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_transcripts ,,,,,,, ,,,,,,, SJBALL020016_C27 NA chrX 42813114 - intergenic NA chrX 42704547 - intergenic ? 8 10 131 55 0.000 0.000 340 451 0.010 0.220 131 131 952 824 GGCTAACTGGACTAAAATCAAGATGTAGGAACACCGCTTGCTTATGTGCTAAAAACTTATTCTAAACTTGGAAAATCACCTCTTAGGCTTTCCATGAAAAGGCTTTTTGGATTCAATTGCTACTGGAATAAGATTTCCTTGGTCATTTTTTTGACTTAAGATTGTCCTCCAGTAGTTTTCTCAGTTCCCCTTCTCCTTCTGCC DEL 39.55 LQ 0 other unhandled orientation ? SJBALL020016_C27 LINC01237 chr2 242824786 + 5utr LOC728323 chr2 243056790 + 5utr > 0 9 79 93 0.000 0.000 0 375 0.000 0.040 87 87 105 157 GCCGCTGTAGGCGCGGCCAGGTCACAGTCGGCACCAGAAGTTTGGCAGATCTCAGTGAGGCGTTAGTTTGCATTTCCTTGTGACGGTATCTTAAATAGCGAAGATGGAGAAATACTCAATAATGAAGAGCATGAATATGCATCCAAAAAAAGAAAAAGGACCATTTTAGAAATGACACA DEL 37.50 LQ 0 other geneB_no_transcripts SJBALL020016_C27 NA chr3 82234503 - intergenic NA chr3 82005505 - intergenic ? 4 4 81 69 0.000 0.000 178 222 0.500 0.450 81 81 7 8 CTTGTTTAGTCTATTGAAGCTGTAACACACTCTGTTTAGCTCATAAGGCGGCCCTGGTTTCACTCCAAAATAGGCGTTTTCCTTCTCTTCTTTTGTGTTGTCCTCAAACTCTGTCAGCTTCACACAAGCACATTCAAATGTATGCTGAC DEL 20.00 LQ 0 other unhandled orientation ? SJBALL020016_C27 FBXW7 chr4 153332456 - coding FBXW7 chr4 153333681 - 5utr > 34 13 96 95 0.010 0.000 1200 496 0.390 0.250 96 96 101 81 GAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCACCAACTCTCCTCCCCATTCTATACAAAAACAACAAAAGATTACTTCCTTAGGATAGATTGCCAGAAGTGGAGTTACTGGGTCAGAGGAATGTGAAAACCTTTGCATCTTCTGATAGTCTAGCCAAGGTCCAA Internal_dup 16.91 LQ 0 ITD 0,0,0,0,0,0 NM_001257069,NM_033632,NM_001257069,NM_033632,, ,,,,, 4,2,4,2,, ,,,,, 500,500,500,500,, ,,,,, ,,,,, NM_001257069,NM_001257069,NM_033632,NM_033632,NM_001257069,NM_033632 -39,-39,-22,-22,-39,-22 3,3,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 531,531,2124,2124,531,2124 34,34,51,51,, ,,,,, TYTY*QCHELQ*YCGPARSPTLLPILYKNNKRLLP*DRLPEVELLGQRNVKTFASSDSLAKVQ,TYTY*QCHELQ*YCGPARSPTLLPILYKNNKRLLP*DRLPEVELLGQRNVKTFASSDSLAKVQ,TYTY*QCHELQ*YCGPARSPTLLPILYKNNKRLLP*DRLPEVELLGQRNVKTFASSDSLAKVQ,TYTY*QCHELQ*YCGPARSPTLLPILYKNNKRLLP*DRLPEVELLGQRNVKTFASSDSLAKVQ,, FBXW7:NM_001257069[1,4]-FBXW7:NM_001257069[3,4];FBXW7:NM_033632[1,2]-FBXW7:NM_001257069[3,4];FBXW7:NM_001257069[1,4]-FBXW7:NM_033632[2,12];FBXW7:NM_033632[1,2]-FBXW7:NM_033632[2,12];; geneB_transcripts=NM_001257069,NM_033632;geneb_utr_codons=13 ,,,,, 2,2,2,2,, SJBALL020016_C27 MGA chr15 41962157 + coding MGA chr15 41961026 + 5utr > 24 23 89 89 0.030 0.000 579 720 0.310 0.460 90 90 105 67 CCCTTAATATAAAACGAGACTTTCTTGGTTTCATGGATACTGATTCAGCACTTAGTGAAGTTCCTCAATTGAAGCAAGAGATTTCTGAATGGATGGGAAGGCCATTGTGACTATGTGGTGATTACAGTTGTCTTACTACTGAGTTTCCTACTGAAATCATGGAGGAGAAACAGCAGATT Internal_dup 12.77 LQ 0 ITD 0,0,0,0,3,3 NM_001080541,NM_001164273,NM_001080541,NM_001164273,, 355,355,355,355,, 2,2,2,2,, tuple,tuple,tuple,tuple,, 1064,1064,1064,1064,, 28,28,28,28,, 88,88,88,88,, NM_001080541,NM_001080541,NM_001164273,NM_001164273,NM_001080541,NM_001164273 -22,-22,-22,-22,-22,-22 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 8571,8571,9198,9198,8571,9198 32,32,32,32,, 98,98,98,98,, LNIKRDFLGFMDTDSALSEVPQLKQEISEWMGRPL*LCGDYSCLTTEFPTEIMEEKQQI,LNIKRDFLGFMDTDSALSEVPQLKQEISEWMGRPL*LCGDYSCLTTEFPTEIMEEKQQI,LNIKRDFLGFMDTDSALSEVPQLKQEISEWMGRPL*LCGDYSCLTTEFPTEIMEEKQQI,LNIKRDFLGFMDTDSALSEVPQLKQEISEWMGRPL*LCGDYSCLTTEFPTEIMEEKQQI,, MGA:NM_001080541[1,2]-MGA:NM_001080541[2,23];MGA:NM_001164273[1,2]-MGA:NM_001080541[2,23];MGA:NM_001080541[1,2]-MGA:NM_001164273[2,24];MGA:NM_001164273[1,2]-MGA:NM_001164273[2,24];; geneB_transcripts=NM_001080541,NM_001164273;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon WMG,WMG,WMG,WMG,, 2,2,2,2,, SJBALL020016_C27 FAM172A,MIR2277 chr5 93018874 - intron LACTBL1 chr1 23298632 + intergenic > 33 0 171 54 0.480 0.970 334 1 0.010 0.010 190 183 4222 0 GATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG CTX 10.54 LQ 0 other 0,0,0 NM_001163417,NM_001163418,NM_032042 ,, ,, ,, 971,779,1109 ,, ,, NM_001289974,NM_001289974,NM_001289974 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020016_C27 WHSC1 chr4 1936989 + coding WHSC1 chr4 1902353 + 5utr > 15 8 91 85 0.000 0.000 653 385 0.060 0.190 91 89 420 183 CACAAAGAGGATACAGGACCCTACAGAAGATGCTGAAGCTGAGGACACACCCAGGAAAAGACTCAGGACGGACAAGCACAGTCTTCGGAAGTGTTCTAAGAACGGAAGCATCTGGGCTGGATGGAATTTAGCATCAAGCAGAGTCCCCTTTCTGTTCAGAGTGTTGTAAAGTGCG Internal_dup 10.38 LQ 2 ITD 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,3,3,3 NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133334,NM_133335,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,7,9,9,8,6,7,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,1674,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_001042424,NM_007331,NM_007331,NM_007331,NM_007331,NM_007331,NM_007331,NM_133330,NM_133330,NM_133330,NM_133330,NM_133330,NM_133330,NM_133331,NM_133331,NM_133331,NM_133331,NM_133331,NM_133331,NM_133335,NM_133335,NM_133335,NM_133335,NM_133335,NM_133335,NM_001042424,NM_007331,NM_133330,NM_133331,NM_133335 -9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9,-9 2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,4,3,3,3,3,3,3,2,2,2,2,2,2,,,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 4098,4098,4098,4098,4098,4098,1890,1890,1890,1890,1890,1890,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,4098,1890,4098,4098,4098 33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,33,,,,, ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,HKEDTGPYRRC*S*GHTQEKTQDGQAQSSEVF*ERKHLGWMEFSIKQSPLSVQSVVKC,,,,, WHSC1:NM_001042424[1,7]-WHSC1:NM_001042424[2,22];WHSC1:NM_007331[1,9]-WHSC1:NM_001042424[2,22];WHSC1:NM_133330[1,9]-WHSC1:NM_001042424[2,22];WHSC1:NM_133331[1,8]-WHSC1:NM_001042424[2,22];WHSC1:NM_133334[1,6]-WHSC1:NM_001042424[2,22];WHSC1:NM_133335[1,7]-WHSC1:NM_001042424[2,22];WHSC1:NM_001042424[1,7]-WHSC1:NM_007331[4,11];WHSC1:NM_007331[1,9]-WHSC1:NM_007331[4,11];WHSC1:NM_133330[1,9]-WHSC1:NM_007331[4,11];WHSC1:NM_133331[1,8]-WHSC1:NM_007331[4,11];WHSC1:NM_133334[1,6]-WHSC1:NM_007331[4,11];WHSC1:NM_133335[1,7]-WHSC1:NM_007331[4,11];WHSC1:NM_001042424[1,7]-WHSC1:NM_133330[4,24];WHSC1:NM_007331[1,9]-WHSC1:NM_133330[4,24];WHSC1:NM_133330[1,9]-WHSC1:NM_133330[4,24];WHSC1:NM_133331[1,8]-WHSC1:NM_133330[4,24];WHSC1:NM_133334[1,6]-WHSC1:NM_133330[4,24];WHSC1:NM_133335[1,7]-WHSC1:NM_133330[4,24];WHSC1:NM_001042424[1,7]-WHSC1:NM_133331[3,23];WHSC1:NM_007331[1,9]-WHSC1:NM_133331[3,23];WHSC1:NM_133330[1,9]-WHSC1:NM_133331[3,23];WHSC1:NM_133331[1,8]-WHSC1:NM_133331[3,23];WHSC1:NM_133334[1,6]-WHSC1:NM_133331[3,23];WHSC1:NM_133335[1,7]-WHSC1:NM_133331[3,23];WHSC1:NM_001042424[1,7]-WHSC1:NM_133335[2,22];WHSC1:NM_007331[1,9]-WHSC1:NM_133335[2,22];WHSC1:NM_133330[1,9]-WHSC1:NM_133335[2,22];WHSC1:NM_133331[1,8]-WHSC1:NM_133335[2,22];WHSC1:NM_133334[1,6]-WHSC1:NM_133335[2,22];WHSC1:NM_133335[1,7]-WHSC1:NM_133335[2,22];;;;; geneB_transcripts=NM_001042424,NM_007331,NM_133330,NM_133331,NM_133335;geneb_utr_codons=10 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,,,,, SJBALL020016_C27 CREBBP chr16 3900301 - coding CREBBP chr16 3901010 - coding > 5 21 74 91 0.030 0.000 264 622 0.260 0.440 74 74 33 53 GACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAGATTTTGGATCATTGTTTGACTTGGAAAATGATCTTCCTGATGAGCTGATACCCAATGGAGGAGAATTAGGCCTTTTAAACAGTGGGAAC Internal_dup 8.67 LQ 2 ITD 0,0,0,0,0,0 NM_001079846,NM_004380,NM_001079846,NM_004380,, ,,,,, 2,2,2,2,, ,,,,, 795,795,795,795,, ,,,,, ,,,,, NM_001079846,NM_001079846,NM_004380,NM_004380,NM_001079846,NM_004380 29,29,29,29,29,29 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple 86,86,86,86,86,86 7215,7215,7329,7329,7215,7329 25,25,25,25,, ,,,,, DPNAGFPANDWSRGTEHRTGRRHGQDFGSLFDLENDLPDELIPNGGELGLLNSGN,DPNAGFPANDWSRGTEHRTGRRHGQDFGSLFDLENDLPDELIPNGGELGLLNSGN,DPNAGFPANDWSRGTEHRTGRRHGQDFGSLFDLENDLPDELIPNGGELGLLNSGN,DPNAGFPANDWSRGTEHRTGRRHGQDFGSLFDLENDLPDELIPNGGELGLLNSGN,, CREBBP:NM_001079846[1,2]-CREBBP:NM_001079846[2,30];CREBBP:NM_004380[1,2]-CREBBP:NM_001079846[2,30];CREBBP:NM_001079846[1,2]-CREBBP:NM_004380[2,31];CREBBP:NM_004380[1,2]-CREBBP:NM_004380[2,31];; geneB_transcripts=NM_001079846,NM_004380 ,,,,, 0,0,0,0,, SJBALL020016_C27 XPO1 chr2 61749739 - coding XPO1 chr2 61753656 - coding > 19 15 97 85 0.000 0.110 477 435 0.080 0.030 98 98 835 832 CGGCAGGCCTCCACAAGTACTATGGACTACAAATTTTGGAAAATGTGATAAAAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGCAAAGAATGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTGATGCTTGGACAAGAGTCGACACAATTTTGGAATTTTCTCAGAATATG Internal_dup 8.60 LQ 0 ITD 0,3 NM_003400, , 4, , 301, , , NM_003400,NM_003400 43,43 3, tuple,tuple 127,127 3216,3216 30, , RQASTSTMDYKFWKM**KQGGRFFQGTSAKQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM, XPO1:NM_003400[1,4]-XPO1:NM_003400[3,25]; geneB_transcripts=NM_003400 , 0, SJBALL020016_C27 CHD7 chr8 61655657 + coding CHD7 chr8 61653820 + 5utr > 14 7 87 83 0.000 0.050 601 247 0.160 0.140 88 88 137 86 CTTCACCTCCACACCCTCATCACCAGCCTTGGGCACAGCTCCACCCATCACCCCAGAACACCCCGCAGAAAGTGCCTGTGCATCAGGACCTATATCCAGACTTTGCCTGACACTGCAGGGTCCAAGAGAATTAAAGAAATATGGAATGACATGAAGAAGATTAGTTAAGG Internal_dup 8.18 LQ 2 ITD 0,0 NM_017780, 556, 2, tuple, 1665, 27, 85, NM_017780,NM_017780 -57,-57 2, tuple,tuple , 8994,8994 31, 95, SPPHPHHQPWAQLHPSPQNTPQKVPVHQDLYPDFA*HCRVQEN*RNME*HEED*LR, CHD7:NM_017780[1,2]-CHD7:NM_017780[2,38]; geneB_transcripts=NM_017780;geneb_utr_codons=13;not_inframe_due_to_intermediate_stop_codon DLY, 2, SJBALL020016_C27 NA chr5 165180438 - intergenic NA chr5 163724204 - intergenic ? 1 3 78 68 0.060 0.000 22 135 0.250 0.400 78 78 3 136 CCTCCAGGTTAGACACTTGAGGGGAATCTCTTGTAAAACTTGGCATTCTCTTTATCATTAACTAGGGCAGCCAGAAAGACCTGTAGTAGCAGAGTGTCTTGATACTGTTGAGTGTCGAAAAGATGCAAGTCTCTAAATTAGAAAAC DEL 7.44 LQ 0 other unhandled orientation ? SJBALL020016_C27 SRCAP chr16 30740894 + coding SRCAP chr16 30740287 + coding > 8 8 86 97 0.030 0.000 408 224 0.330 0.600 87 87 28 28 CTCTGGCCCCGGGCTCGTCCTTTGCACCGTATTGTGTGTAACATGCGCACCCAGTTCCCTGACTTAAGACTCATCCAGTATGATTGCGGACTCCCTGGAGGAAAAGCGGAAGCGGCAGCGGTCTGAACGCCTGGAACGGATTTTCCAACTTAGTGAGGCTCATGGGGCCCTGGCACCTGTGTAT Internal_dup 6.25 LQ 0 ITD 0,3 NM_006662, , 27, , 6127, , , NM_006662,NM_006662 1887,1887 26, tuple,tuple 5659,5659 9693,9693 29, , SGPGLVLCTVLCVTCAPSSLT*DSSSMIADSLEEKRKRQRSERLERIFQLSEAHGALAPVY, SRCAP:NM_006662[1,27]-SRCAP:NM_006662[26,34]; geneB_transcripts=NM_006662 , 1, SJBALL020016_C27 AXIN1 chr16 396147 - coding AXIN1 chr16 397106 - 5utr > 10 6 84 94 0.000 0.050 283 301 0.120 0.300 85 85 136 35 AGACTCCCTCAGAAGCTGCTCCTGGAGACAGCTGCCCCGAGGGTCTCCTCCAGTAGACGGTACAGCGAAGGCAGAGAGTTCAGGACAGATTGATTCACTTTGGAGCTGTAAGTACTGATGTATTAGGGTGCAGCGCTCATTGTTCCTTGACGCAGAGTCCCAAAATGAATATCCAAGAG Internal_dup 5.70 LQ 0 ITD 0,0,0,0,0,0 NM_003502,NM_181050,NM_003502,NM_181050,, ,,,,, 2,2,2,2,, ,,,,, 878,878,878,878,, ,,,,, ,,,,, NM_003502,NM_003502,NM_181050,NM_181050,NM_003502,NM_181050 -26,-26,-26,-26,-26,-26 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, 2589,2589,2481,2481,2589,2481 30,30,30,30,, ,,,,, TPSEAAPGDSCPEGLLQ*TVQRRQRVQDRLIHFGAVSTDVLGCSAHCSLTQSPKMNIQE,TPSEAAPGDSCPEGLLQ*TVQRRQRVQDRLIHFGAVSTDVLGCSAHCSLTQSPKMNIQE,TPSEAAPGDSCPEGLLQ*TVQRRQRVQDRLIHFGAVSTDVLGCSAHCSLTQSPKMNIQE,TPSEAAPGDSCPEGLLQ*TVQRRQRVQDRLIHFGAVSTDVLGCSAHCSLTQSPKMNIQE,, AXIN1:NM_003502[1,2]-AXIN1:NM_003502[2,11];AXIN1:NM_181050[1,2]-AXIN1:NM_003502[2,11];AXIN1:NM_003502[1,2]-AXIN1:NM_181050[2,10];AXIN1:NM_181050[1,2]-AXIN1:NM_181050[2,10];; geneB_transcripts=NM_003502,NM_181050;geneb_utr_codons=13 ,,,,, 2,2,2,2,, SJBALL020016_C27 ASXL1 chr20 30959679 + intron ASXL1 chr20 30954190 + coding > 9 7 80 81 0.000 0.060 257 203 0.160 0.490 81 81 134 181 TGGTTAAACTGGTCTCAAACTCCTGGCCTCAAGTGATCTTCCCACCACAGCTTCACAAAGCACTGGGATGGATTACAGGTATTAGAAAACTACTCGGATGCTCCAATGACACCAAAACAGATTCTGCAGGTCATAGAGGCAGAAGGACTAAAGGAAATGAGAA Internal_dup 4.45 LQ 2 ITD 0,0,0,0,3,3 NM_001164603,NM_015338,NM_001164603,NM_015338,, ,,,,, 3,3,3,3,, ,,,,, ,,,,, ,,,,, ,,,,, NM_001164603,NM_001164603,NM_015338,NM_015338,NM_001164603,NM_015338 21,21,21,21,21,21 2,2,2,2,, tuple,tuple,tuple,tuple,tuple,tuple ,,,,, ,,,,, 27,27,27,27,, ,,,,, WLNWSQTPGLK*SSHHSFTKHWDGLQVLENYSDAPMTPKQILQVIEAEGLKEMR,WLNWSQTPGLK*SSHHSFTKHWDGLQVLENYSDAPMTPKQILQVIEAEGLKEMR,WLNWSQTPGLK*SSHHSFTKHWDGLQVLENYSDAPMTPKQILQVIEAEGLKEMR,WLNWSQTPGLK*SSHHSFTKHWDGLQVLENYSDAPMTPKQILQVIEAEGLKEMR,, ASXL1:NM_001164603[1,3]-ASXL1:NM_001164603[2,4];ASXL1:NM_015338[1,3]-ASXL1:NM_001164603[2,4];ASXL1:NM_001164603[1,3]-ASXL1:NM_015338[2,12];ASXL1:NM_015338[1,3]-ASXL1:NM_015338[2,12];; geneB_CDS_mapping_exception=NM_001164603:-2;geneB_CDS_mapping_exception=NM_015338:-2 geneB_transcripts=NM_001164603,NM_015338 ,,,,, 0,0,0,0,, SJBALL020016_C27 FIP1L1 chr4 54294350 + coding FIP1L1 chr4 54280783 + coding > 8 4 90 90 0.000 0.060 213 130 0.050 0.020 99 99 343 428 GCAACATACAGGAGCTCCTCCCACTCACCTTCCACCTCCTCCATTTCTTCCACCTCCTCCGACTGTCAGCACTGCTCCACCTCTGATTCCACCACCGGAAACAGCACTTCTTCTCAGTCTCAGACAAGTACTGCCTCCAGAAAAGCCAATTCAAGCGTTGGGAAGTGGCAGGATCGATATGGGAGGGCC Internal_dup 3.30 LQ 2 ITD 0,0,0,0,0,0,0,0 NM_001134937,NM_001134938,NM_030917,NM_001134937,NM_001134938,NM_030917,, ,,,,,,, 12,10,13,12,10,13,, ,,,,,,, 1129,952,1174,1129,952,1174,, ,,,,,,, ,,,,,,, NM_001134937,NM_001134937,NM_001134937,NM_030917,NM_030917,NM_030917,NM_001134937,NM_030917 258,258,258,273,273,273,258,273 10,10,10,11,11,11,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 772,772,772,817,817,817,772,817 1767,1767,1767,1785,1785,1785,1767,1785 33,33,33,33,33,33,, ,,,,,,, ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,ATYRSSSHSPSTSSISSTSSDCQHCSTSDSTTGNSTSSQSQTSTASRKANSSVGKWQDRYGRA,, FIP1L1:NM_001134937[1,12]-FIP1L1:NM_001134937[10,18];FIP1L1:NM_001134938[1,10]-FIP1L1:NM_001134937[10,18];FIP1L1:NM_030917[1,13]-FIP1L1:NM_001134937[10,18];FIP1L1:NM_001134937[1,12]-FIP1L1:NM_030917[11,18];FIP1L1:NM_001134938[1,10]-FIP1L1:NM_030917[11,18];FIP1L1:NM_030917[1,13]-FIP1L1:NM_030917[11,18];; geneB_breakpoint_not_mapped_to_CDS=NM_001134938 geneB_transcripts=NM_001134937,NM_001134938,NM_030917;geneB_intronic=NM_001134938 ,,,,,,, 0,0,0,0,0,0,, SJBALL020016_C27 MSH2 chr2 47672797 + coding MSH2 chr2 47635542 + coding > 9 4 96 90 0.000 0.030 151 176 0.180 0.090 97 97 109 60 TATTGTTGGCAGTTTTTGTGACTCCTCTTACTGATCTTCGTTCTGACTTCTCCAAGTTTCAGGAAATGATAGAAACAACTTTAGATATGGATCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAGTTGA Internal_dup 3.22 LQ 2 ITD 0,0,0,0,3,3 NM_000251,NM_001258281,NM_000251,NM_001258281,, ,,,,, 8,9,8,9,, ,,,,, 1386,1188,1386,1188,, ,,,,, ,,,,, NM_000251,NM_000251,NM_001258281,NM_001258281,NM_000251,NM_001258281 72,72,6,6,72,6 2,2,3,3,, tuple,tuple,tuple,tuple,tuple,tuple 214,214,16,16,214,16 2805,2805,2607,2607,2805,2607 32,32,32,32,, ,,,,, IVGSFCDSSY*SSF*LLQVSGNDRNNFRYGSGAKNLQSVVLSKMNFESFVKDLLLVRQYRV,IVGSFCDSSY*SSF*LLQVSGNDRNNFRYGSGAKNLQSVVLSKMNFESFVKDLLLVRQYRV,IVGSFCDSSY*SSF*LLQVSGNDRNNFRYGSGAKNLQSVVLSKMNFESFVKDLLLVRQYRV,IVGSFCDSSY*SSF*LLQVSGNDRNNFRYGSGAKNLQSVVLSKMNFESFVKDLLLVRQYRV,, MSH2:NM_000251[1,8]-MSH2:NM_000251[2,16];MSH2:NM_001258281[1,9]-MSH2:NM_000251[2,16];MSH2:NM_000251[1,8]-MSH2:NM_001258281[3,17];MSH2:NM_001258281[1,9]-MSH2:NM_001258281[3,17];; geneB_transcripts=NM_000251,NM_001258281 ,,,,, 1,1,1,1,, SJBALL020016_C27 FIP1L1 chr4 54294351 + coding FIP1L1 chr4 54292041 + coding > 3 2 65 83 0.000 0.020 183 36 0.050 0.020 66 66 343 456 CCTCCTCCATTTCTTCCACCTCCTCCGACTGTCAGCACTGCTCCACCTCTGATTCCACCACCGGGAGATTACCTGGGGCAATTGATGTTATCGGTCAGACTATAACTATCAGCCGAGTAGAAGGCAGGCGACGGGCAAATGAGAACAG Internal_dup 2.15 LQ 2 ITD 0,0,0,0,0,0,0,0,0,0,0,0 NM_001134937,NM_001134938,NM_030917,NM_001134937,NM_001134938,NM_030917,NM_001134937,NM_001134938,NM_030917,,, ,,,,,,,,,,, 12,10,13,12,10,13,12,10,13,,, ,,,,,,,,,,, 1129,952,1174,1129,952,1174,1129,952,1174,,, ,,,,,,,,,,, ,,,,,,,,,,, NM_001134937,NM_001134937,NM_001134937,NM_001134938,NM_001134938,NM_001134938,NM_030917,NM_030917,NM_030917,NM_001134937,NM_001134938,NM_030917 294,294,294,235,235,235,309,309,309,294,235,309 11,11,11,9,9,9,12,12,12,,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 881,881,881,704,704,704,926,926,926,881,704,926 1767,1767,1767,1563,1563,1563,1785,1785,1785,1767,1563,1785 21,21,21,21,21,21,21,21,21,,, ,,,,,,,,,,, SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,SSISSTSSDCQHCSTSDSTTGRLPGAIDVIGQTITISRVEGRRRANEN,,, FIP1L1:NM_001134937[1,12]-FIP1L1:NM_001134937[11,18];FIP1L1:NM_001134938[1,10]-FIP1L1:NM_001134937[11,18];FIP1L1:NM_030917[1,13]-FIP1L1:NM_001134937[11,18];FIP1L1:NM_001134937[1,12]-FIP1L1:NM_001134938[9,15];FIP1L1:NM_001134938[1,10]-FIP1L1:NM_001134938[9,15];FIP1L1:NM_030917[1,13]-FIP1L1:NM_001134938[9,15];FIP1L1:NM_001134937[1,12]-FIP1L1:NM_030917[12,18];FIP1L1:NM_001134938[1,10]-FIP1L1:NM_030917[12,18];FIP1L1:NM_030917[1,13]-FIP1L1:NM_030917[12,18];;; geneB_transcripts=NM_001134937,NM_001134938,NM_030917 ,,,,,,,,,,, 2,2,2,2,2,2,2,2,2,,, SJBALL020016_C27 KIAA1429 chr8 95541393 - coding NA chr12 116095719 - intergenic > 4 0 91 42 0.000 0.470 79 1 0.030 0.010 92 81 220 0 GGCAATATTCTGATGAAGGAGAAGTAGAAGAGGAACAACAAGAAGAAGGAGAAGAAGATGAAGATGATGTGGATGTAGAGGAAGAAGAGGAACAACAAGAAGAAGGAGAAGAAGATGAAGATGATGTGGATGTAGA CTX 1.77 LQ 0 CLoss , NM_015496,NM_183009 , , , 785,785 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 SMAD2 chr18 45391430 - coding SMAD2 chr18 45396935 - coding > 2 4 43 82 0.000 0.000 122 122 0.060 0.020 44 39 392 384 GGAGAAACAAGTGACCAACAGTTGAATCAAAGTATGGACACAGCACTTGCTCTGAAATTTGGGGACTGAGTACACCAAATACGATAGATCAGTGGGATACAACAGGCCTTTACAGCTTCT Internal_dup 1.26 LQ 0 ITD 0,0,0,0,0,0,0,0 NM_001003652,NM_001135937,NM_005901,NM_001003652,NM_001135937,NM_005901,, ,,,,,,, 6,5,6,6,5,6,, ,,,,,,, 730,640,730,730,640,730,, ,,,,,,, ,,,,,,, NM_001003652,NM_001003652,NM_001003652,NM_005901,NM_005901,NM_005901,NM_001003652,NM_005901 79,79,79,79,79,79,79,79 3,3,3,3,3,3,, tuple,tuple,tuple,tuple,tuple,tuple,tuple,tuple 237,237,237,237,237,237,237,237 1404,1404,1404,1404,1404,1404,1404,1404 13,13,13,13,13,13,, ,,,,,,, RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,RNK*PTVESKYGHSTCSEIWGLSTPNTIDQWDTTGLYSF,, SMAD2:NM_001003652[1,6]-SMAD2:NM_001003652[3,11];SMAD2:NM_001135937[1,5]-SMAD2:NM_001003652[3,11];SMAD2:NM_005901[1,6]-SMAD2:NM_001003652[3,11];SMAD2:NM_001003652[1,6]-SMAD2:NM_005901[3,11];SMAD2:NM_001135937[1,5]-SMAD2:NM_005901[3,11];SMAD2:NM_005901[1,6]-SMAD2:NM_005901[3,11];; geneB_breakpoint_not_mapped_to_CDS=NM_001135937 geneB_transcripts=NM_001003652,NM_001135937,NM_005901;geneB_intronic=NM_001135937 ,,,,,,, 2,2,2,2,2,2,, SJBALL020016_C27 NBN chr8 90965585 - coding NA chr3 187649182 - intergenic > 4 0 58 29 0.000 0.000 159 1 0.030 0.010 59 52 252 0 AGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAGTTAGAAATGGATGATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATTCAAGG CTX 1.00 LQ 0 CLoss NM_002485 1732 geneB_no_transcripts SJBALL020016_C27 EIF3I chr1 32697201 + 3utr GRHL2 chr8 102490192 - intergenic > 5 0 91 34 0.000 0.890 102 1 0.430 0.010 91 87 20 0 GGTGGATCTCCAACCAGGCCAGAGAAGATTCTCACAGAAGGTTTTGAACTCTAAGAAATAAATTGGTTTGGTAATAAATGGCTTCTGGTCAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGGTGG CTX 1.00 LQ 0 other 0 NM_003757 NM_024915 geneB_no_transcripts SJBALL020016_C27 GNE chr9 36215325 - 3utr LOC101928370 chr1 101685417 - intergenic > 3 0 85 30 0.000 0.000 76 1 0.040 0.010 86 91 91 0 ATCCTTGACCCTATCAGCTGAATTTAATGAAATATTCCTCTCTGCTGTGAAATTTTACCAGTATAGTATTTGGTCTAGTGACAGGGCGAGACTCCGTCTACACACACACACACACACACA CTX 1.00 LQ 0 other ,,,, NM_001128227,NM_001190383,NM_001190384,NM_001190388,NM_005476 ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ,,,, ;;;; geneB_no_transcripts ,,,, ,,,, SJBALL020016_C27 ARMC10 chr7 102740043 + 3utr NA chr6 169716062 - intergenic > 4 0 121 34 0.000 0.910 99 1 0.150 0.010 122 120 78 0 AAAAAAAAAAAATGATGGAGCTCCGAATGTGCTTAAGTGGAAAGATATCTATGAAATATGGTGGTTTTTTAAAACACAAAAATTATAGAATATGGGATCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAATGAAAAATGCTT CTX 1.00 LQ 0 other ,,,,,,, NM_001122838,NM_001161009,NM_001161010,NM_001161011,NM_001161012,NM_001161013,NM_031905,NM_198990 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_transcripts ,,,,,,, ,,,,,,, SJBALL020016_C27 JUND chr19 18390614 - 3utr NA chr1 222198245 + intergenic > 3 0 82 30 0.000 0.730 122 1 0.050 0.010 83 96 207 0 GTTCTTTCGACCGGTCCCCCCTCCCTTTTTTGTTCTGTTTTGTTTTGTTTTGCTACGAGTCCACATTCCTGTTTGTAATCCTCGGTCCCCCCTCCCTTTTTTGTTCTGTTTTGTTTTGTTTTGCTACGAGTCCAC CTX 1.00 LQ 0 other , NM_001286968,NM_005354 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 YTHDC1 chr4 69202945 - coding NA chr4 170742677 + intergenic > 4 0 77 28 0.000 0.850 87 1 0.140 0.010 94 94 23 0 GGGGGACAAAAAAGGGGGAAGGAGTGGAAGAAGATGTGGAGGAAGATGAAGAAGTAGAAGAAGATGCAGAAGAAGATGAAGAGGTAGATGAAGAAGTAGAAGAAGATGCAGAAGAAGATGAAGAGGAC ITX 1.00 LQ 0 CLoss , NM_001031732,NM_133370 , , , 683,683 , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 GPBP1 chr5 56472228 + 5utr LRRC38 chr1 13784640 - intergenic > 3 0 86 32 0.000 0.990 71 1 0.030 0.010 87 86 181 0 GAGGATACAAAATAAAAATACAAACTGGAAAATAAAGATTACAGAGAAAAAACCAACACCTTCCTGTGCAGTCCTGTTGGAATTTGGTCTCACTCTATCACCCAGGCTGGAGAGCAG CTX 1.00 LQ 0 other 0,0,0 NM_001127235,NM_001203246,NM_022913 ,, ,, ,, ,, ,, ,, NM_001010847,NM_001010847,NM_001010847 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020016_C27 GPBP1 chr5 56472228 + 5utr NA chr5 104193066 - intergenic > 3 0 86 31 0.000 0.990 71 1 0.030 0.010 87 87 181 0 GAGGATACAAAATAAAAATACAAACTGGAAAATAAAGATTACAGAGAAAAAACCAACACCTTCCTGTGCAGTCCTGTTGGAATTTGGTCTCACTCTATCACCCAGGCTGGAGAGCAG ITX 1.00 LQ 0 other ,, NM_001127235,NM_001203246,NM_022913 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020016_C27 LOC102546299 chr5 163913748 + 5utr NA chr5 162120258 + intergenic > 6 0 75 68 0.000 1.000 166 1 0.190 0.010 94 94 61 1 CTAAGAAGAACTTCTTATGCACAGAATCTTCTGGAGAGGAAAGAAGAAACCATGTCTAGACAAGGTGCTGGAAAGACCCAGGGAAGACACAGGCTTTGTTATCAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATT INS 1.00 LQ 0 other geneB_no_transcripts SJBALL020016_C27 LOC102546299 chr5 163913748 + 5utr NA chr5 28847722 - intergenic > 6 0 75 67 0.000 1.000 166 1 0.190 0.010 94 94 61 0 CTAAGAAGAACTTCTTATGCACAGAATCTTCTGGAGAGGAAAGAAGAAACCATGTCTAGACAAGGTGCTGGAAAGACCCAGGGAAGACACAGGCTTTGTTATCAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATT ITX 1.00 LQ 0 other geneB_no_transcripts SJBALL020016_C27 NA chrX 42727902 - intergenic PPP1R2P9 chrX 42664532 - intergenic > 102 95 99 251 0.000 0.000 3848 2832 0.130 0.080 115 115 794 222 CAGTAAATGACATCGAAGCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGATTATTGTAAGAAATACCTCTTATTGAAGATCTGTTTGTCTGCATTATAAACAGAGGCCTCCCTTTGAGAGTTCATCTGCAATATCACCTTCTGAAATGAGACACAGCTATTTAACAGAACTGACCTATTTGCAGGACTAAGACTGATTTGAGAAGATATGGGCTGCTTGTTCCAATCTGTGTTGTCCTTCCCATATTGCCAATCTCACATCTCTTATCTGAATCTCTCTAAAGCTAGTCACTTGGGCTTTAATATGTGAA read_through 668.00 RT 0 other geneB_no_transcripts SJBALL020016_C27 FOXC2 chr16 86604751 + intergenic FOXL1 chr16 86617516 + intergenic > 62 60 124 204 0.000 0.000 2113 2098 0.070 0.520 124 124 186 115 CCCTCTCCAAGCTGCAGAAGAAGGTGGCCCAAGCTCCTTGCCTGCGTCTGCCGTGATGGTTTCATTTTACTTCTGCTCGCTTCATGCTATTTGCCCCAGGAGAAGAGGAGAGTATTCCAGACGGTACAAGAATCAGCGTCCTGGCAGGAAATAGAAACCCACTTAGATGGCTCCATGGAAAGGATCAGGGTGGAAGGACTATTTATGGAGGAGTGGGCTGGATGAACGAAACCGCCAGTGATTAGCAAGGGTGAGAACAGCTCCATCCTGCCTCTGCCCCCTCAGCCTGCAGCAGGTACCACCTTCAGAGCTGGAGTGGAAAGGAGC read_through 421.10 RT 0 other 0 NM_005251 NM_005250 geneB_no_transcripts SJBALL020016_C27 NA chrX 42704548 + intergenic NA chrX 42727902 + intergenic ? 254 18 163 205 0.000 0.000 4772 75 0.220 0.020 163 163 824 794 GGTTTATTTACATCACAGTTTTTCAGGCTGTACAAGAAGCATGGCACCAGCATCTGCATCTGGTGAAGGCCTTAGATGGTTTCCACTCATGGCAGAAGGAGAAGGGGAACTGAGAAAACTACTGGAGGACAATCTTAAGTCAAAAAAATGACCAAGGAAATCCTTACAATAATCCTTCATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCTTCGATGTCATTTACTGATCTTCACAGAAACTTCACTTTTCTAGCTGTGTCTATTGCTGTGTTCCTGAGGATCATATCACTGATTCACTGTTTAAATGGAATTACTA read_through 242.35 RT 0 other unhandled orientation ? SJBALL020016_C27 LINC00871 chr14 46961124 + intron NA chr14 47013194 + intergenic > 62 0 277 84 0.000 0.000 2309 0 0.590 0.000 293 293 94 91 ATCAATCTTCTTGGCTGGCTTATTTATTTCCAGCTTTTTATTCCTGGAGATGTAGCAGGATATCAAGTGATGGCTTATTTATTTGCAGTTTTTCATTCCCTTGGTTTCTGTGATTTCACACCTTCCATTTCGCCCCCTCTCTTGGTGTCTTTGAATCAGCATTAGTTCACTTGCTGTTAGATCTCTATGACAACATTCAATCCAAGTTGAGTGAGAAAAGTCCAACATTTAATCCACGTTGAGGGAGAAAAAAGTCCAAAAATCCAGAAGGATTCTCTGAATTTGAAGATGCCACAAGGATGATAACTGTCAGGTCTCTGATCCCAAGCCAAGCCATCACATCCCCTGTGACTTGCACGTATACATCCAGATGGCC read_through 230.90 RT 0 other geneB_no_transcripts SJBALL020016_C27 NA chrX 42815497 - intergenic NA chrX 42727998 - intergenic ? 74 59 105 149 0.000 0.000 2157 2371 0.070 0.020 105 105 1059 843 GTGAGGACACAGTGAGAAGGCACCACCTGTGAGCAAGGAAAAGGATCTGCTCTAGGCACTGAATCTGCTGGTACCTTGATTGTGTACTTTCCAGACTAAAGAACTCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGATTATTGTAAGAAATACCTCTTATTGAAGATCTGTTTGTCTGCATTATAAACAGAGGCCTCC read_through 226.40 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42704496 - intergenic PPP1R2P9 chrX 42664531 - intergenic > 25 24 81 279 0.000 0.000 1350 793 0.110 0.080 81 81 938 222 CTAAAATCCTGATGAAGGATTATTGTAAGGATTTCCTTGGTCATTTTTTTGACTTAAGATTGTCCTCCAGTAGTTTTCTCAAAATACCTCTTATTGAAGATCTGTTTGTCTGCATTATAAACAGAGGCCTCCCTTTGAGAGTTCATCTGCAATATCACCTTCTGAAATGAGACACAGCTATTTAACAGAACTGACCTATTTGCAGGACTAAGACTGATTTGAGAAGATATGGGCTGCTTGTTCCAATCTGTGTTGTCCTTCCCATATTGCCAATCTCACATCTCTTATCTGAATCTCTCTAAAGCTAGTCACTTGGGCTTTAATATGTGAAACTTTCTAAAAATAAAGTTTTAAACGGG read_through 214.30 RT 0 other geneB_no_transcripts SJBALL020016_C27 NA chrX 42746659 - intergenic NA chrX 42727998 - intergenic ? 150 5 253 149 0.000 0.000 4057 91 0.170 0.020 253 253 907 843 GGAAAAGGATCTGCTCTAGGCACTGAATCTGCTGGTACCTTGATTGTGTACTTTCCAGACTAAAGAACTGTCTGTATGTCAGAAGTCTGAAACCAGGCTAACTGGACTAAAATCAAGATGTAGCTATCAGGATCCAAGGACCTTGTAGTAATTCCATTTAAACAGTGAATCAGTGATATGATCCTCAGGAACACAGCAATAGACACAGCTAGAAAAGTGAAGTTTCTGTGAAGATCAGTAAATGACATCGAAGCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGATTATTGTAAGAAATACCTCTTATTGAAGATCTGTTTGTCTGCATTATAAACAGAGGCCTCC read_through 207.40 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr14 39011193 - intergenic NA chr14 38983205 - intergenic ? 46 48 89 214 0.000 0.000 1635 2127 0.560 0.550 89 89 81 87 CCTGCCGCCTTGTGAAGAAGGTGCCTTGCTTCCCCTTCACCTTGGCCATGATTGTAAGTTTCCCGAGGCCTCCTCAGCCATGTGGAACTGAAGAGGAAAAATGCCATGTGAAGATGGAAATATACCATAGGATGACAGAGGAAGAGATTGGAATGATGCAGTTGCAAGCCAAGGCATAGCAAGATTTGATGTTTATCACTGGAGGCTGGGAAGAAGCAAGGAGAGATTCTACCCAGAGTCTCAGAGCAACCATGGCCATGATGACAACTTGATTTTGGATTTTTGGCCTCCAGAACTATGAG read_through 188.10 RT 0 other unhandled orientation ? SJBALL020016_C27 LINC00871 chr14 46958510 + intron NA chr14 47013194 + intergenic > 23 20 148 78 0.000 0.000 801 931 0.220 0.220 147 148 56 91 GTTCATTTTAGACTCTAGAGTCTCTTTGAAAAAAATGAGTAAGGTATGTTGAGGCAGATCTTACCGCAGATCTTCTGGGCCAACAGACTCCTCACTTCTGAAAAAGTTCTACCATTCAGGCTCCAGTCATGTATCAATCTTCTTGGCTCACAAGGATGATAACTGTCAGGTCTCTGATCCCAAGCCAAGCCATCACATCCCCTGTGACTTGCACGTATACATCCAG read_through 173.20 RT 0 other geneB_no_transcripts SJBALL020016_C27 CASP8AP2 chr6 90537647 - intergenic MDN1 chr6 90513273 - coding > 11 12 87 179 0.000 0.000 504 578 0.370 0.200 87 87 29 54 CTCGCCATGTTGTTGCCCAGGCTCGTCTCCAACTCTTGACCTCAAGCAATCCTCCGACCTCTGCCTTCCAAAGTGCTGGTATTACAGGTGTGGACACCTCAAGATCGCCAGTGTGTCCTGAGTACCTTAGCACAGTTGCTTTTGGATAAGGACTGTACTGTGCTGGTTGGTCGCCAGCTTCGCCCTCTCCTTTTGGATTTGCTGGAAAGGAATGCCGAAGCCATTAAAGCTGGAGGCCAAATCAACCATGATCTGCATGAACGGC read_through 108.20 RT 1 NLoss 0 NM_014611 35 tuple 103 16791 geneA_no_transcript_IDs_found geneB_transcripts=NM_014611 SJBALL020016_C27 CLEC12A chr12 10134728 + coding CLEC1B chr12 10147620 + intron > 11 11 86 73 0.000 0.000 489 583 0.250 1.000 86 86 61 21 CATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTGGTAAGTGACCCAGCTGCTGCTTCTATAACCCATAGTAGTGACTTGGACTGAGAGAAGAGGGAATCTCAAGAAT read_through 107.20 RT 0 CLoss ,,,,,,, NM_001207010,NM_001207010,NM_001300730,NM_001300730,NM_138337,NM_138337,NM_201623,NM_201623 ,,,,,,, ,,,,,,, ,,,,,,, 671,671,641,641,641,641,542,542 ,,,,,,, ,,,,,,, NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509,NM_001099431,NM_016509 ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ,,,,,,, ;;;;;;; geneB_no_inframe_contig_found geneB_transcripts=NM_001099431,NM_016509;geneB_transcript_strand_disagree=NM_001099431;geneB_transcript_strand_disagree=NM_016509 ,,,,,,, ,,,,,,, SJBALL020016_C27 NA chr14 38983205 + intergenic NA chr14 39011229 + intergenic ? 47 0 214 89 0.000 0.000 2082 0 0.530 0.000 214 214 87 59 CTCATAGTTCTGGAGGCCAAAAATCCAAAATCAAGTTGTCATCATGGCCATGGTTGCTCTGAGACTCTGGGTAGAATCTCTCCTTGCTTCTTCCCAGCCTCCAGTGATAAACATCAAATCTTGCTATGCCTTGGCTTGCAACTGCATCATTCCAATCTCTTCCTCTGTCATCCTATGGTATATTTCCATCTTCACATGGCATTTTTCCTCTTCAGTTCCACATGGCTGAGGAGGCCTCGGGAAACTTACAATCATGGCCAAGGTGAAGGGGAAGCAAGGCACCTTCTTCACAAGGCGGCAGG read_through 104.10 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42746634 - intergenic NA chrX 42727998 - intergenic ? 49 0 200 89 0.000 0.000 2036 0 0.060 0.020 200 200 857 843 TCAGAAGTCTGAAACCAGGCTAACTGGACTAAAATCAAGATGTAGCTATCAGGATCCAAGGACCTTGTAGTAATTCCATTTAAACAGTGAATCAGTGATATGATCCTCAGGAACACAGCAATAGACACAGCTAGAAAAGTGAAGTTTCTGTGAAGATCAGTAAATGACATCGAAGGTACGCAATATATTCCCAGTTGAAGCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGAT read_through 101.80 RT 0 other unhandled orientation ? SJBALL020016_C27 CD274 chr9 5459187 + intron PDCD1LG2 chr9 5524536 + intron > 10 11 77 92 0.000 0.000 375 550 1.000 0.110 77 77 27 23 TGCAGTCTCCTTTGCCATGGATCAACACAATAGGAAATCTTCCGGCACTGATGGTTTTTCCAAGGGGGAGTTCTTCCTAAATTAGAATGCCTTCTCCTCATGGGATTTTTTTAAAATCTTGTCATTTCATGTCTCTTTAATTAAAGAGTTTTGATTTCAGAGGAGGGT read_through 92.50 RT 3 other , NM_001267706,NM_014143 , , , 52,394 , , NM_025239,NM_025239 , , , 55,55 822,822 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_025239 , , SJBALL020016_C27 STAG3L2 chr7 74300250 - 3utr GTF2IRD2 chr7 74251505 - coding > 4 4 76 67 0.000 0.000 170 230 0.240 0.330 76 76 33 43 GGATGGTTTCCATGATCGTGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGGATCATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGAC read_through 80.00 RT 0 upTSS 2,2 , , , , , , , NM_001281447-locA,NM_173537-locA -1,-1 , tuple,tuple , 327, , , , ; geneA_no_transcript_IDs_found;geneB_CDS_mapping_exception=NM_173537-locA:-2 geneB_transcripts=NM_001281447-locA,NM_173537-locA;geneb_utr_codons=2;reannotated geneB from GTF2IRD2_locA to GTF2IRD2 , , SJBALL020016_C27 DOCK10 chr2 225606012 - intergenic NA chr2 225587449 - intergenic > 8 8 139 99 0.000 0.000 409 381 0.050 0.140 139 139 159 55 GTTGGTTTCTTAAGAAAGGTACTCAGGTCAGAATGTGGAATCCAAAGACGAAATAGAAAGCAGATATGTCTCATCCTGCTGAGGCTAACTGAACATTCTGTATACCTCTGGGAGAGATCTTCTATGTACATGAACATAGAGGGTAAGGCAATTGGATATCTCTGCACAGAAGGAAATATGATCAAGTGCTGATGATCCAGTCAAAATCCCTTCTTTTTATTCTGACCTTGCCCATCC read_through 79.00 RT 0 other 0,0 NM_001290263,NM_014689 , , , , , , , , , , , , , , , ; geneB_no_transcripts , , SJBALL020016_C27 NA chrX 42693599 + intergenic NA chrX 42704496 + intergenic ? 31 2 214 85 0.000 0.000 1477 47 0.100 0.110 214 214 302 938 CAGGGACATAAACAACAATTTATTATTTCTCATGATTCCATGAGTTGGTTGAGTGATTTTTCTGTGAATTTTGCCTGGAATCACTCATACAGCTGTATTCAGCAGAAGAGGCCAGTGGAGTCTGAGTTCTGCCGGAATAGCTGAGAAGGCTGGACCTTTCCCTCCACATGGTTTTTAATTCTAGACTTTTTGCAGCATAGTTGTCTCAGGTTTTGAGAAAACTACTGGAGGACAATCTTAAGTCAAAAAAATGACCAAGGAAATCCTTACAATAATCCTTCATCAGGATTTTAGTGAG read_through 76.20 RT 0 other unhandled orientation ? SJBALL020016_C27 PRIM1 chr12 57127931 - coding NACA chr12 57108471 - coding > 7 6 96 140 0.000 0.000 350 255 0.040 0.000 96 96 261 8747 ATAAGAAGACCAGTCTAGCACCTTATGTGAAAGTTTTTGAACATTTTCTTGAAAATCTGGATAAATCCCGAAAAGGAGAACTTCTTAAGAAGAGTGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGG read_through 70.00 RT 2 Fusion 1,1 NM_000946,NM_000946 415,415 12,12 perfect,perfect 1243,1243 30,30 94,94 NM_001113202,NM_001113203 24,734 3,6 tuple,tuple 71,2201 648,2778 31,31 95,95 KKTSLAPYVKVFEHFLENLDKSRKGELLKKSGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQR,KKTSLAPYVKVFEHFLENLDKSRKGELLKKSGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQR PRIM1:NM_000946[1,12]-NACA:NM_001113202[3,8];PRIM1:NM_000946[1,12]-NACA:NM_001113203[6,11] geneB_transcripts=NM_001113202,NM_001113203 , 2,2 SJBALL020016_C27 PLGRKT chr9 5439266 + intergenic CD274 chr9 5452531 + intron > 7 7 85 75 0.000 0.000 231 400 0.500 0.960 85 85 13 16 CGCTGGCTGGATCCACCAGGAAGCCAGAAGACAGTGGAGCTAGGTCTGTGTAGTCTGTAGAGGTCAGCCTACTAGGCACAATGCCTGAAGAAGATGTCAGTCTTCTTCTCTTACACCAACTGCCCTGATATGAGGTTTAGAGGTTAAAGAACATGTGTG read_through 63.10 RT 2 other 0,0 NM_018465,NM_018465 , , , , , , NM_001267706,NM_014143 , , , , 531,873 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_001267706,NM_014143;geneb_utr_codons=5 , , SJBALL020016_C27 GINS3 chr16 58455325 + intergenic NDRG4 chr16 58495375 + intergenic > 6 6 77 81 0.000 0.000 248 352 0.040 0.100 77 77 148 60 TGTGAAGAAGGATGTATTTGCTTCTCCTTCTGCCATGATCGTAAGTTTCCTGAGGCCTCCCCAGCCATGTTGAACTACTCTATCACCCAGGCTGGAGTGCAGCAGCGCGATCTCGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGTGATTCTCCT read_through 60.00 RT 0 other 0,0,0 NM_001126129,NM_022770,NM_001126130 ,, ,, ,, ,, ,, ,, NM_020465,NM_020465,NM_020465 ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020016_C27 ATP6V0E2 chr7 149589487 + intergenic NA chr7 149672811 + intergenic > 6 6 89 79 0.000 0.000 216 374 0.260 0.180 89 89 22 33 CCTATGAAAAAGTCAAGGTCATCAACTCCCCTCAACACTCTCCTTTGGGCTTGGTCAACTACCTTTGCTGACTCTCTGATGGCAATACAGTTATGGAGGAAGGCGCCCCTTCACAGAGCAGCAGGAGAGGGAATGAGAGTCGAGCAAAGGGGAAAGCCCCTTAGAAA read_through 59.00 RT 0 other 0,0,0 NM_001289990,NM_145230,NM_001100592 ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ,, ;; geneB_no_transcripts ,, ,, SJBALL020016_C27 NA chrX 42727998 + intergenic NA chrX 42792703 + intergenic ? 0 20 94 111 0.000 0.000 0 1151 0.020 0.020 94 94 843 944 CAATAATCCTTCATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCAGCATATTAAAATGTAAATGCTGGTGCTTCATGATCCTTTTGTGCAACGTGGTCACCTACATCTTGATTTTAGTCCAGTTAGCCTGGTTTCAGACTTCTGACATACAGACAGTTCTTT read_through 57.55 RT 0 other unhandled orientation ? SJBALL020016_C27 MIR1246 chr2 177450761 - intergenic NA chr2 177362523 - intergenic > 5 5 83 125 0.000 0.000 324 176 0.130 0.120 83 83 39 41 CTCATGATGAAAGCCTTTGTTGTCCGAGATGGCCTGGGATCACCTGGGTAACCTCTGGGTGATGTTCATATTTGAGATGTGACAAACGGGTTGTAGCAATCTAAATCATGTCTGCTAAACAACTGACGCTGGGCAACAGTGAGAATCAGAGCTTGAGTGCTGCCTCTGTAGTTCCAGCTTTGCAGGAGGCTGAGGCAGGAGCAGCAC read_through 50.00 RT 0 other geneB_no_transcripts SJBALL020016_C27 TTL chr2 113278002 + coding POLR1B chr2 113295720 + intergenic > 5 5 73 86 0.000 0.000 254 230 0.070 0.330 73 73 174 14 CTTTGACTTCATGGTCGATGAGGAGCTGAAGGTGTGGCTCATTGAGGTCAACGGTGCCCCTGCATGTGCTCAGGAAAAGCCCAGGACCAGATTGTAAGCCAGATGGTAAGGAATTAACACCAATATTTCATAGAGTCTCCTAAAAAATAGAAGAGAAG read_through 48.40 RT 1 CLoss 0,0,0,0,0,0 NM_153712,NM_153712,NM_153712,NM_153712,NM_153712,NM_153712 ,,,,, ,,,,, ,,,,, 1019,1019,1019,1019,1019,1019 ,,,,, ,,,,, NM_019014,NM_001282774,NM_001282776,NM_001282777,NM_001282779,NM_001137604 ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ,,,,, ;;;;; geneB_no_transcripts ,,,,, ,,,,, SJBALL020016_C27 NA chr2 177683424 - intergenic NA chr2 177654091 - intergenic ? 10 11 84 105 0.000 0.000 435 504 0.630 0.520 84 84 15 20 TTGCTTCTCTTGCTAATTGATTCATCCCCTGGCAGGGCCTGAGACACGGGCTGTTGGCTGGACACTCGCTCCCAGCTGCATATCCTGGCTCCAGCTTGTTGTGCTGGCTCAACTGGCTCATGAGTTCATTTTCCAGCTCCTCCCATGCTTCATACTGGGGAAAATGATCCACGGGCTGCCCAAGGTGC read_through 46.95 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr3 104536457 + intergenic NA chr3 104548503 + intergenic ? 10 10 71 87 0.000 0.000 468 444 0.440 0.480 71 71 22 20 CAAAGATACTGCTCTTATTAATGTGGTGTTTCACAAATGGGTTGATTCTAAGGGAAGTTCGTAACAGCATAATGTTTCCTGTAAACACTGTCACATCGAAAGCCTATTTCATTTGAAGCTTATTTATCGAGAAAAACAAAAAATCAAGACAGTTACT read_through 45.60 RT 0 other unhandled orientation ? SJBALL020016_C27 IBA57 chr1 228353858 + coding C1orf145 chr1 228385269 + intergenic > 4 4 59 76 0.000 0.000 243 157 0.390 0.400 59 59 25 9 GCTACGCCCACTTCCTGAACGTGCAGGGCCGGACGCTCTATGACGTCATCTTGTACGGATGTGCTAGCCCTGGCGCTGGCTATTGAAGAGCTAGCAGTGGCCACATGGAAGCCCTGGACAGCTTAGTGGTGTGCC read_through 40.00 RT 0 CLoss NM_001010867 341 geneB_no_transcripts SJBALL020016_C27 NA chrX 42813114 - intergenic NA chrX 42792759 - intergenic ? 1 13 131 58 0.000 0.000 6 794 0.010 0.010 131 131 952 950 GGCTAACTGGACTAAAATCAAGATGTAGGAACACCGCTTGCTTATGTGCTAAAAACTTATTCTAAACTTGGAAAATCACCTCTTAGGCTTTCCATGAAAAGGCTTTTTGGATTCAATTGCTACTGGAATAAGTGACCACGTTGCACAAAAGGATCATGAAGCACCAGCATTTACATTTTAATATGCTGCTATCAGGATCCAAGG read_through 40.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42774614 + intergenic NA chrX 42814490 + intergenic ? 18 0 129 87 0.000 0.000 756 0 0.020 0.060 129 129 902 1027 CTCTGTTTATAATGCAGACAAACAGATCTTCAATAAGAGGTATTGCTTAGTCTTCTTCCTCCTTCCAATCTCCCACTACATGATGGCTTGCACCTGTAGTCCCAGCACAACATGGCGAGACTCCATTTCTACATCTTGATTTTAGTCCAGTTAGCCTGGTTTCAGACTTCTGACATACAGACAGTTCTTTAGTCTGGAAAGTACACAATCAAGGT read_through 37.80 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr5 165645195 - intergenic NA chr5 165597993 - intergenic ? 8 9 87 120 0.000 0.000 486 234 0.180 0.220 87 87 26 40 CACATGCTTCAAAAGGAAGAAATAAATATGATACGACTTACCCTTACCTTTCTTCCAGTAACTCCCGCCTTCATTCACTCATCATTTCTACTTAAATATCAGCCATCTGGAGATGCTTAGCACACTGAGGTATAAATCTGGACCACAGGAGAATAGCATGAACTAAATATGTAGAAACTGTCACCAGAGGAGACAGTTGAAACCGT read_through 36.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42746788 + intergenic NA chrX 42790322 + intergenic ? 15 0 137 85 0.000 0.000 719 0 0.020 0.000 138 138 925 929 AGCGTACCTTCGATGTCATTTACTGATCTTCACAGAAACTTCACTTTTCTAGCTGTGTCTATTGCTGTGTTCCTGAGGATCATATCACTGATTCACTGTTTAAATGGAATTACTACAAGGTCCTTGGATCCTGATAGCTTAGATTATGTTCATCTGAGCAATTATTCTGGCCTCTGCTGGGGTCATTCATGCATTTGTGATCAGCTGCTGGGTTGCCTGGTG read_through 35.95 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr4 154030726 - intergenic NA chr4 154017856 - intergenic ? 7 7 54 88 0.000 0.000 424 276 0.880 0.780 54 54 7 8 CACCACACTGCTTTACACAATGGCTGAACTGATTTACATTCCCACCAACAATGTGATTCTCAAAGATGGCCCCTGAAGCTGAGCATTGTCTGCCGTGTTTCTCATGCTGAGCGGAGGTAGTGGCTAAGAACATGAGCTCTG read_through 35.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr5 165204982 - intergenic NA chr5 165180523 - intergenic ? 7 7 81 76 0.000 0.000 322 370 0.760 0.540 81 81 58 12 GTTCCTCTCACGACTGGGCGATTTCTCGGGACACCTGCCTGAGTCCTCATCAGCAGTGTGGCTTCAACAGCAACTTCTCACCTATATTCTCCTCCAGGTTAGACACTTGAGGGGAATCTCTTGTAAAACTTGGCATTCTCTTTATCATTAACTAGG read_through 34.60 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr5 18697940 - intergenic NA chr5 18674980 - intergenic ? 7 7 80 86 0.000 0.000 316 355 0.880 0.880 80 80 7 7 TATAATGGGAAACCCCTTTCGCTTGGTTGTCATTCTCTGTCTGCCACCATGATTTGAGGCCTCCCCAGCCACGTGGAACTAAAGATGATTCTGAACACATTGAATAAAGAATTCTGGCCATCATTTCAATACTGTCTACTTAGCCTTGACTTAACCATGACAACG read_through 33.55 RT 0 other unhandled orientation ? SJBALL020016_C27 ZBTB7C chr18 45549667 - intergenic NA chr18 45502734 - intergenic > 3 3 67 58 0.000 0.000 133 173 0.380 0.140 66 68 7 21 CCAGAGGTGATGCCTAGGAAGGGCATTTTCATCCTTGCGCTCCCGTCTTTAACCATGAACGCTGACCAGTTCCATGTGGCTGGGGAGGCCTCACAATCATGGTGGAAGGCGAAAGGCACGTCTTAC read_through 30.60 RT 0 other 0 NM_001039360 geneB_no_transcripts SJBALL020016_C27 NA chr2 177612496 + intergenic NA chr2 177653947 + intergenic ? 6 6 85 73 0.000 0.000 277 323 0.380 0.270 85 85 15 21 ATGACTTGATGATTTATTTATGCAGCACTTGGCAGCCTATAGTCCAGATTGTGGCTGAAGCTGAATTTTATGAGCCTTCCCCTAGGACACTGGATTTTGTGGATGCTCCTTGGACACACTGGAATGCACCTTGGGCAGCCCGTGGATCATTTTCCCC read_through 30.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr2 177293945 + intergenic NA chr2 177345296 + intergenic ? 9 9 43 75 0.000 0.000 583 317 0.210 0.240 43 43 41 36 CACCTTGTGAGGAAGATGCCTACTTCCCCTTCTGCCATGATGAGACAAGGTTTTGCCACATTGCCTAGGCTGGTCTTGAACTCAGAGCTCAAGCGGTCCACCCACCTCGGCCTCCTG read_through 29.63 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr5 157336958 + intergenic NA chr5 157348759 + intergenic ? 6 6 51 77 0.000 0.000 318 222 0.030 0.030 51 51 223 172 GCTGCCTTGTGAAGAAGATGCCTGCTTCTCTTTTGCCTTCTGCACTGACTGTGGTTTCAATGTTGAGTCACATCTGGTCAAGTACAGGAGAGCCTTCTTTATGCTCCTTCTTTCTCCCTTATTGGCT read_through 27.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42730384 + intergenic NA chrX 42813114 + intergenic ? 17 0 149 65 0.000 0.000 524 0 0.020 0.010 149 149 799 952 GGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCTGGACTGTGTTGTTTGTGCCCGTCTCTCTCCCCCACATCCTGTTTTTTTTGAATCACACTTTTTATGTTATTGAACAATATTGAAGAACATTATTCCAGTAGCAATTGAATCCAAAAAGCCTTTTCATGGAAAGCCTAAGAGGTGATTTTCCAAG read_through 26.20 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr8 21326997 - intergenic NA chr8 21315211 - intergenic ? 7 6 102 89 0.000 0.000 353 158 0.220 0.240 102 102 31 24 GCTCCACCGTGGTAAAGACGTGCTTGTTTCCTTTTCGCCTCTGCCATGATTCTGAGTTTCTTTAGGCCTTCCAACCATGCTTCCTGTAATGCCTGCAGAACTGAGCACAGAGGAAAGGCCAGGTGAGGACCCAATGAGAAGGCTGCTGTCTGCAAGCCAGGAAGAGAGGTCTCACCAGAAACTCATCCTG read_through 25.55 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr9 87793651 + intergenic NA chr9 87805255 + intergenic ? 7 7 72 82 0.000 0.000 218 280 0.700 0.640 72 72 9 10 GGGCTCTTCAGCAACAGGATGTTCCACCACTCACGTTGCAGTCATCCTGCCCCTTTTGTTCTGGTGCTATCTCTGGGAACCTGAAGAAGGGGCTTCTCAGAATAACATTGTTAAGACCTGCTTCAGACGGTGAGCCTCAAGTCCTCCAAGCCC read_through 24.90 RT 0 other unhandled orientation ? SJBALL020016_C27 LOC653653 chr17 58200929 + intergenic CA4 chr17 58212117 + intergenic ? 5 5 77 95 0.000 0.000 275 205 0.720 0.220 77 77 6 22 CCTCATTCTCCTGGTGTTTGCACAAGTGCCTTCTCCACAGACCATGCTTCAGTCTCTTTCTTAGTTCTCCTTCTTACTCAGCTTTGTTTCTCAAAGGCTTTAACTTTTCCGGGAAGAGCTGCAATCGTTTCTTGGCAGGAGTAGTTTCAGGTTTCCATTGCTCTGAAAGAG read_through 24.00 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr14 39011229 - intergenic NA chr14 38983205 - intergenic ? 8 0 50 85 0.000 0.000 475 0 0.130 0.000 50 50 59 87 GCCGCCTTGTGAAGAAGGTGCCTTGCTTCCCCTTCACCTTGGCCATGATTGAAGAGGAAAAATGCCATGTGAAGATGGAAATATACCATAGGATGACAGAGGAAGAGATTGGAATGATGCAGTTGCAAGCCAAG read_through 23.75 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42727998 + intergenic NA chrX 42790322 + intergenic ? 1 9 83 64 0.000 0.000 6 467 0.020 0.010 83 83 843 929 CATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCTTAGATTATGTTCATCTGAGCAATTATTCTGGCCTCTGCTGGGGTCATTCATGCATTTGTGAT read_through 23.65 RT 0 other unhandled orientation ? SJBALL020016_C27 ACSL4 chrX 108902583 - coding KCNE1L chrX 108867550 - 3utr > 4 4 37 74 0.000 0.000 216 116 0.050 1.000 37 37 130 8 GAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCAACAGCCCTGACAGCACGCTCCAGCCCTCTGGGAACTGAATCCAACACGTCCAACACTTGGCACTGAACTGAAG read_through 21.62 RT 0 CLoss , NM_004458,NM_022977 , , , 1855,1978 , , NM_012282,NM_012282 , , , , 429,429 , , , ; geneB_no_inframe_contig_found geneB_transcripts=NM_012282;geneb_utr_codons=13 , , SJBALL020016_C27 EPHB4 chr7 100428126 + intergenic SLC12A9 chr7 100450136 + intergenic ? 5 5 69 79 0.000 0.000 197 220 0.830 0.250 69 69 5 19 GCTGAGATGAGAGGATCGTTTCAGTCCAGGAGTTTGAGGGCAGCCTGAACAACATAGCGAGACCCTGTCTAAGTGAAGGAGGCTCCGAGACCCGCGGCCCACGTCCTGCCGGAGACGCTTGTCTGCAGGGCTGCATTGCATCCCCGG read_through 20.85 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chr18 23096199 - intergenic NA chr18 23055288 - intergenic ? 4 4 58 61 0.000 0.000 200 200 0.670 0.670 58 58 5 5 GGAAGATGGTCTGCAGGTCCACAGGCTGTAGAAAGAGCAGGATGGCCCTGGCAGATAGAGACAGAGTCTCACTCTGTCGTCCAGGCTGGAGTGCAATGGCACCATCTCAACTTACCGC read_through 20.00 RT 0 other unhandled orientation ? SJBALL020016_C27 FOXC2 chr16 86604752 + intergenic FOXL1 chr16 86612114 + 5utr > 3 0 97 81 0.000 0.000 168 1 0.070 0.000 97 97 186 169 CCCAAGCTCCTTGCCTGCGTCTGCCGTGATGGTTTCATTTTACTTCTGCTCGCTTCATGCTATTTGCCCCAGGAGAAGAGGAGAGTATTCCAGACGGGCTAAGTCAACATATAACAGCAAACTTACAACAATTATTTAACATTTTTAAAGCCATGAAGAAGGGACAGAGCACGGAGC read_through 16.80 RT 0 other 0 NM_005251 geneB_no_transcripts SJBALL020016_C27 NA chr3 104536457 + intergenic NA chr3 104626056 + intergenic ? 0 5 81 81 0.000 0.000 0 252 0.000 0.310 81 81 22 15 CTCCAATCTCCAAAGATACTGCTCTTATTAATGTGGTGTTTCACAAATGGGTTGATTCTAAGGGAAGTTCGTAACAGCATCGCAGAGTTCTACAGCTTCATTCCTGAAGCCAGAGAGACCACGAACCCACCAGAATGAAGAAACTCCATACACGTCCGAAC read_through 12.60 RT 0 other unhandled orientation ? SJBALL020016_C27 NA chrX 42774615 + intergenic NA chrX 42815497 + intergenic ? 3 3 84 61 0.000 0.000 129 140 0.000 0.070 94 94 901 1059 GTCCTGATAGCTTAGTCTTCTTCCTCCTTCCAATCTCCCACTACATGATGGCTTGCACCTGTAGTCCCAGCACAACATGGCGAGACTCCATTTAGTTCTTTAGTCTGGAAAGTACACAATCAAGGTACCAGCAGATTCAGTGCCTAGAGCAGAT read_through 7.00 RT 0 other unhandled orientation ?