Genetic variants tied to increased risk of bone complications in young leukemia patients

Research led by St. Jude Children’s Research Hospital has identified genetic variations in young leukemia patients that are associated with an increased incidence of osteonecrosis, a serious cancer treatment side effect

Memphis, Tennessee, December 5, 2015

Seth Karol

Seth Karol, M.D.

Variations in genes involved in normal bone development are associated with an 8- to 15-fold increased risk for osteonecrosis in young patients with acute lymphoblastic leukemia (ALL), according to research led by St. Jude Children’s Research Hospital and Children’s Oncology Group investigators. The results were discussed today at the 57th Annual Meeting of the American Society of Hematology.

Osteonecrosis is a major side effect of ALL treatment with chemotherapy. About 15 percent of ALL patients develop the complication, which is caused by reduced blood flow to bones in the hips and other joints and leads bone to break down faster than it is replaced. For patients, the results may include stiffness, pain, disability and joint-replacement surgery. ALL patients aged 10 to 20 years old are at particularly high risk for osteonecrosis.

This study is the first to focus on genetic risk factors for osteonecrosis in ALL patients less than 10 years old, an age group that accounts for about 75 percent of newly identified ALL patients and about half of ALL patients who develop osteonecrosis. Researchers used genome-wide association studies to check the DNA of 1,186 ALL patients less than 10 years old for single changes in the 3.2 billion “letters” or chemical bases that make up the human genetic code.

Researchers checked for genetic variations that were more common in 82 young ALL patients who developed osteonecrosis than in 287 who did not. The screening was then repeated with an additional 817 ALL patients younger than 10 years old. The patients were treated in clinical trials of the Children’s Oncology Group, an international clinical trials group focused exclusively on pediatric cancer.

This plot shows newly identified genetic variations that are associated with an increased risk of osteonecrosis.

This plot shows newly identified genetic variations that are associated with an increased risk of osteonecrosis, a treatment-relate complication that affects about 15 percent of acute lymphoblastic leukemia patients. Arranged by chromosome from left to right, the variants shown in orange or red are linked to increased risk of osteonecrosis in young leukemia patients. Adapted from: Karol et al. Blood. In Press.

Patients with osteonecrosis were eight to 15 times more likely to have genetic variations located near BMP7, a gene important for normal bone development.

“The goal of this and earlier studies is to identify and understand genetic and other risk factors for osteonecrosis so we can identify patients at high risk for the side effect and develop interventions to prevent the disease,” said first author Seth Karol, M.D., a St. Jude Physician Scientist Training Program fellow. Karol works with the study’s senior author Mary Relling, Pharm.D., chair of the St. Jude Department of Pharmaceutical Sciences.

A variation in the glutamate receptor gene GRID2 was also associated with a greater likelihood of osteonecrosis in ALL patients younger than 10. GRID2 belongs to a family of genes that carries instructions for assembling receptor proteins on the cell membrane that cells rely on to respond to the chemical messenger glutamate. The finding confirms previous research that reported variations in other glutamate receptor genes were associated with an elevated risk of osteonecrosis, with the prior study primarily identifying the risk in patients aged 10 and older.

“The finding that the genetic variations that affect osteonecrosis risk differ by age was unexpected,” Karol said. “The results suggest that as children age, particularly when bone growth is accelerated during adolescence, certain gene variants may become more or less important.”

Additional research is planned to expand the search for osteonecrosis genetic risk factors to include additional ALL treatment regimens and subtypes of the disease. Working in laboratory models, researchers also plan to study how gene variants affect osteonecrosis risk in order to help lay the groundwork for intervention to prevent the disease.

The other authors are Wenjian Yang, Colton Smith, ChengCheng Liu, Laura Ramsey, Christian Fernandez, Tamara Chang, Geoffrey Neale and Cheng Cheng, all of St. Jude; Leonard Mattano Jr., HARP Pharma Consulting, Mystic, Conn.; Kelly Maloney, Children’s Hospital Colorado, Denver; Elaine Mardis and Robert Fulton, McDonnell Genome Institute, Washington University in St. Louis; Paul Scheet, University of Texas MD Anderson Cancer Center, Houston; Eric Larsen, Maine Medical Center, Portland, Maine; Mignon Loh, University of California, San Francisco; Elizabeth Raetz, University of Utah, Salt Lake City; Stephen Hunger, Children’s Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia; and Meenakshi Devidas, University of Florida, Gainesville.

This study was supported by grants (GM92666, GM115279, CA21765, CA36401, CA142665, CA98543, CA98413, CA114766, U01-HG04603, RC2-GM092618, R01- LM010685, 5T32-GM007569) from the National Institutes of Health; the Leukemia & Lymphoma Society and ALSAC.

St. Jude Children’s Research Hospital

St. Jude Children’s Research Hospital is leading the way the world understands, treats and cures childhood cancer and other life-threatening diseases. It is the only National Cancer Institute-designated Comprehensive Cancer Center devoted solely to children. Treatments developed at St. Jude have helped push the overall childhood cancer survival rate from 20 percent to 80 percent since the hospital opened more than 50 years ago. St. Jude freely shares the breakthroughs it makes, and every child saved at St. Jude means doctors and scientists worldwide can use that knowledge to save thousands more children. Families never receive a bill from St. Jude for treatment, travel, housing and food — because all a family should worry about is helping their child live. To learn more, visit stjude.org or follow the hospital on Twitter and Instagram at @stjuderesearch.