We have developed the grin package that uses the genomic random interval (GRIN) model to identify particular loci, genes, or gene-sets with a significant abundance of genomic lesions. The method was published by Pounds et al (2013) http://bioinformatics.oxfordjournals.org/content/early/2013/07/17/bioinformatics.btt372.abstract
The method is implemented in this grin R package written for the freely available statistical computing language R.
To Install grin:
Download grin_1.1.tar.gz and execute the command install.packages ("download.dir/grin_1.1.tar.gz",repos=NULL,type="source") in R, where download.dir is the directory to which the file was saved.
The grin user’s manual explains how to use the grin package.
To receive alerts regarding software updates, send an e-mail with "Updates on grin Software" in the subject line.
More questions? Contact Stan Pounds.