Share through
St. Jude Research Logo
About Us
Care & Treatment
Research
Training
Get Involved
Ways to Give
St. Jude Research
WHY ST. JUDE
Back
WHY ST. JUDE
Data and Visualization Tools
Shared Resources
Why St.Jude
Translation Innovation
Scientific Milestones
DEPARTMENTS & LABS
Back
DEPARTMENTS & LABS
Departments
View all departments
Labs
View all labs
Clinical Research
View all clinical researchers
CENTERS & INITIATIVES
Back
CENTERS & INITIATIVES
Comprehensive Cancer Center
Pediatric Translational Neuroscience Initiative
Blue Sky
St. Jude Research Collaboratives
Centers & Initiatives
Global Impact on Infectious Disease
Center of Excellence for Data-Driven Discovery
Center of Excellence for Innate Immunity and Inflammation
Center of Excellence for Pediatric Immuno-Oncology
CAREERS
Home
Departments
Biostatistics
Biostatistics Software
Reference Marker Normalization
Department of Biostatistics
Reference marker normalization
Mullighan et al
(2007) normalized their SNP microarray data using a novel reference-marker normalization method. The method is described briefly in the
supplementary materials of the article
.
We have developed
a set of R routines
to implement this procedure. This
User's Guide
may be helpful in getting started.
Here are the
SNP annotation data
,
reference chromosome data
,
initial signal data
,
quantile-normalized signals
,
invariant-set normalized signals
,
directed reference-normalized signals
, and
automated reference-normalized signals
.
To receive alerts regarding software updates, send an
e-mail
with "Updates on Reference Marker Normalization Software" in the subject line.
More questions? Contact
Stan Pounds
.